Turnip curly top virus, a highly divergent geminivirus infecting turnip in Iran

Virus Research

Volumn 152, Issue 1-2, 2010, Pages 169-175

  Briddon, Rob W ^a   Heydarnejad, Jahangir ^b   Khosrowfar, Fakhrosadat ^c   Massumi, Hossain ^b   Martin, Darren P ^d   Varsani, Arvind ^d,e  

^a NATIONAL INSTITUTE FOR BIOTECHNOLOGY AND GENETIC ENGINEERING NIBGE   (Pakistan)

^b SHAHID BAHONAR UNIVERSITY OF KERMAN   (Iran)

^c Education and Culture Organization of Fars   (Iran)

^d UNIVERSITY OF CAPE TOWN   (South Africa)

^e UNIVERSITY OF CANTERBURY   (New Zealand)

Author keywords

Curtovirus; Geminivirus; Turnip

Indexed keywords

AMINO ACID; VIRUS PROTEIN;

ARTICLE; GEMINIVIRUS; IRAN; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; TURNIP; TURNIP CURLY TOP VIRUS; VIRION; VIRUS GENOME; CLASSIFICATION; GEMINIVIRIDAE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; RAPESEED; VIROLOGY;

BEET MILD CURLY TOP VIRUS; BRASSICA RAPA SUBSP. RAPA; CURTOVIRUS; GEMINIVIRIDAE;

BASE SEQUENCE; BRASSICA NAPUS; EVOLUTION, MOLECULAR; GEMINIVIRIDAE; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; PLANT DISEASES; VIRAL PROTEINS;

EID: 77955272370     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2010.05.016     Document Type: Article

References (27)

1. Argüello-Astorga G.R., Ruiz-Medrano R. An iteron-related domain is associated to motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid-base pairs by a comparative approach. Arch. Virol. 2001, 146:1465-1485.
2. Briddon R.W., Bedford I.D., Tsai J.H., Markham P.G. Analysis of the nucleotide sequence of the treehopper-transmitted geminivirus, tomato pseudo-curly top virus, suggests a recombinant origin. Virology 1996, 219:387-394.
3. Briddon R.W., Markham P.G. Complementation of bipartite begomovirus movement functions by topocuviruses and curtoviruses. Arch. Virol. 2001, 146:1811-1819.
4. Briddon R.W., Pinner M.S., Stanley J., Markham P.G. Geminivirus coat protein replacement alters insect specificity. Virology 1990, 177:85-94.
5. Briddon R.W., Stenger D.C., Bedford I.D., Stanley J., Izadpanah K., Markham P.G. Comparison of a beet curly top virus isolate from the old world with those from the new world. European Journal of Plant Pathology 1998, 104:77-84.
6. Camacho C., Coulouris G., Avagyan V., Ma N., Papadopoulos J., Bealer K., Madden T.L. BLAST+: architecture and applications. BMC Bioinformatics 2008, 10:421.
7. Chen L.F., Brannigan K., Clark R., Gilbertson R.L. Characterization of curtoviruses associated with curly top disease of tomato in California and monitoring for these viruses in beet leafhoppers. Plant Disease 2010, 94:99-108.
8. Briddon R.W., Watts J., Markham P.G., Stanley J. The coat protein of beet curly top virus is essential for infectivity. Virology 1989, 172:628-633.
9. Fauquet C.M., Briddon R.W., Brown J.K., Moriones E., Stanley J., Zerbini M., Zhou X. Geminivirus strain demarcation and nomenclature. Arch. Virol. 2008, 153:783-821.
10. Grasso C., Lee C. Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems. Bioinformatics 2004, 20:1546-1556.
11. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
12. Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J. Corchorus yellow vein virus, a New World geminivirus from the Old World. J. Gen. Virol. 2006, 87:997-1003.
13. Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J. Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation. J. Gen. Virol. 2008, 89:312-326.
14. Hormuzdi S.G., Bisaro D.M. Genetic analysis of beet curly top virus: evidence for three virion sense genes involved in movement and regulation of single- annd double-stranded DNA levels. Virology 1993, 193:900-909.
15. Hosseini Abhari E., Heydarnejad J., Massumi H., Hosseini Pour A., Izadpanah K. Proceedings of the Second Asian Conference on Plant Pathology, (Singapore National University of Singapore) 2005, p. 62.
16. Martin D.P., Williamson C., Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 2005, 21:260-262.
17. Nawaz-ul-Rehman M.S., Fauquet C.M. Evolution of geminiviruses and their satellites. FEBS Lett. 2009, 583:1825-1832.
18. Settlage S.B., See R.G., Hanley-Bowdoin L. Geminivirus C3 protein: replication enhancement and protein interactions. J. Virol. 2005, 79:9885-9895.
19. Shepherd D.N., Martin D.P., Lefeurve P., Monjane A.L., Owor B., Rybicki E.P., Varsani A. A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J. Virol. Methods 2008, 149:97-102.
20. Stanley J., Bisaro D.M., Briddon R.W., Brown J.K., Fauquet C.M., Harrison B.D., Rybicki E.P., Stenger D.C. Geminiviridae. Virus Taxonomy, VIIIth Report of the ICTV, 301-326 2005, Elsevier/Academic Press, London. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
21. Stanley J., Latham J.R., Pinner M.S., Bedford I., Markham P.G. Mutational analysis of the monopartite geminivirus beet curly top virus. Virology 1992, 191:396-404.
22. Stanley J., Markham P.G., Callis R.J., Pinner M.S. The nucleotide sequence of an infectious clone of the geminivirus beet curly top virus. EMBO J. 1986, 5:1761-1767.
23. Soto M.J., Gilbertson M.L. Distribution and rate of movement of the curtovirus Beet mild curly top virus (Family geminiviridae) in the beet leafhopper. Phytopathology 2003, 93:479-484.
24. Soto M.J., Chen L.F., Seo Y.S., Gilbertson R.L. Identification of regions of the Beet mild curly top virus (family Geminiviridae) capsid protein involved in systemic infection, virion formation and leafhopper transmission. Virology 2005, 341:257-270.
25. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
26. Varsani A., Shepherd D., Dent K., Monjane A., Rybicki E., Martin D. A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family. Virol. J. 2009, 6:36.
27. Yazdi H., Heydarnejad J., Massumi H. Genome characterization and genetic diversity of beet curly top Iran virus: a geminivirus with a novel nonanucleotide. Virus Genes 2008, 36:539-545.