The genetics of host-virus coevolution in invertebrates

Current Opinion in Virology

Volumn 8, Issue , 2014, Pages 73-78

  Obbard, Darren J ^a   Dudas, Gytis ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

ARTICLE; COEVOLUTION; DIVERSIFYING SELECTION; DROSOPHILA MELANOGASTER; EVOLUTIONARY RATE; INVERTEBRATE; NONHUMAN; PLANT IMMUNITY; PRIORITY JOURNAL; RNA INTERFERENCE; RNA VIRUS; SELECTIVE SWEEP; SIGNAL TRANSDUCTION; VERTEBRATE; VIRUS CELL INTERACTION; VIRUS GENE; ADAPTATION; ANIMAL; EVOLUTION; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; IMMUNOLOGY; VIROLOGY; VIRUS;

ADAPTATION, BIOLOGICAL; ANIMALS; BIOLOGICAL EVOLUTION; INVERTEBRATES; POLYMORPHISM, GENETIC; SELECTION, GENETIC; VIRUSES;

EID: 84905180469     PISSN: 18796257     EISSN: 18796265     Source Type: Journal    
DOI: 10.1016/j.coviro.2014.07.002     Document Type: Review

References (74)

1. E.V. Koonin, and V.V. Dolja A virocentric perspective on the evolution of life Curr Opin Virol 3 2013 546 557
2. P.T. Johnson Viral diseases of marine invertebrates Helgolander Meeresuntersuchungen 37 1984 65 98
3. T. Renault, and B. Novoa Viruses infecting bivalve molluscs Aquatic Living Res 17 2004 397 409
4. T. Williams Natural invertebrate hosts of iridoviruses (Iridoviridae) Neotrop Entomol 37 2008 615 632
5. C. Desbiez, B. Moury, and H. Lecoq The hallmarks of "green" viruses: do plant viruses evolve differently from the others? Infect Genet Evol 11 2011 812 824
6. D.H. Janzen When is it coevolution? Evolution 34 1980 611 612
7. M.E.J. Woolhouse, J.P. Webster, E. Domingo, B. Charlesworth, and B.R. Levin Biological and biomedical implications of the co-evolution of pathogens and their hosts Nat Genet 32 2002 569 577
8. T.B. Sackton, B.P. Lazzaro, T.A. Schlenke, J.D. Evans, D. Hultmark, and A.G. Clark Dynamic evolution of the innate immune system in Drosophila Nat Gen 39 2007 1461 1468
9. D.J. Obbard, J.J. Welch, K.-W. Kim, and F.M. Jiggins Quantifying adaptive evolution in the Drosophila immune system PLoS Genet 5 2009 e1000698
10. S.J. McTaggart, D.J. Obbard, C. Conlon, and T.J. Little Immune genes undergo more adaptive evolution than non-immune system genes in Daphnia pulex BMC Evol Biol 2012 12
11. J. Roux, E. Privman, S. Moretti, J.T. Daub, M. Robinson-Rechavi, and L. Keller Patterns of positive selection in seven ant genomes Mol Biol Evol 31 2014 1661 1685 10.1093/molbev/msu141
12. B. Kolaczkowski, D.N. Hupalo, and A.D. Kern Recurrent adaptation in RNA interference genes across the Drosophila phylogeny Mol Biol Evol 28 2011 1033 1042
13. V. Nolte, R.V. Pandey, R. Kofler, and C. Schlotterer Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana Genome Res 23 2013 99 110
14. A. Nayak, M. Tassetto, M. Kunitomi, and R. Andino RNA interference-mediated intrinsic antiviral immunity in invertebrates B.R. Cullen, Intrinsic Immunity 2013 Springer Berlin Heidelberg 183 200 Current Topics in Microbiology and Immunology, vol 371
15. D.J. Obbard, F.M. Jiggins, D.L. Halligan, and T.J. Little Natural selection drives extremely rapid evolution in antiviral RNAi genes Curr Biol 16 2006 580 585
16. D.J. Obbard, F.M. Jiggins, N.J. Bradshaw, and T.J. Little Recent and recurrent selective sweeps of the antiviral RNAi gene argonaute-2 in three species of Drosophila Mol Biol Evol 28 2011 1043 1056
17. F. Li, and S.-W. Ding Virus counterdefense: diverse strategies for evading the RNA-silencing immunity Annu Rev Microbiol 60 2006 503 531
18. J.T. van Mierlo, A.W. Bronkhorst, G.J. Overheul, S.A. Sadanandan, J.-O. Ekström, M. Heestermans, D. Hultmark, C. Antoniewski, and R.P. van Rij Convergent evolution of argonaute-2 slicer antagonism in two distinct insect RNA viruses PLoS Pathog 8 2012 e1002872
19. A. Nayak, B. Berry, M. Tassetto, M. Kunitomi, A. Acevedo, C. Deng, A. Krutchinsky, J. Gross, C. Antoniewski, and R. Andino Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila Nat Struct Mol Biol 17 2010 547 554
20. N. Qi, L. Zhang, Y. Qiu, Z. Wang, J. Si, Y. Liu, X. Xiang, J. Xie, C.-F. Qin, and X. Zhou et al. Targeting of dicer-2 and RNA by a viral RNA silencing suppressor in Drosophila cells J Virol 86 2012 5763 5773
21. J.T. van Mierlo, G.J. Overheul, B. Obadia, K.W.R. van Cleef, C.L. Webster, M.-C. Saleh, D.J. Obbard, and R.P. van Rij Novel Drosophila viruses encode host-specific suppressors of RNAi PLoS Pathog 10 2014 10.1371/journal.ppat.1004256 e1004256
22. D.J. Obbard, K.H.J. Gordon, A.H. Buck, and F.M. Jiggins The evolution of RNAi as a defence against viruses and transposable elements Philos Trans R Soc B-Biol Sci 364 2009 99 115
23. B. Longdon, L. Wilfert, and F.M. Jiggins The sigma viruses of Drosophila R. Dietzgen, Rhabdoviruses: Molecular Taxonomy, Evolution, Genomics, Ecology, Cytopathology and Control 2012 Caister Academic Press Kuzmin I 117 132
24. M.L. Wayne, D. Contamine, and M. Kreitman Molecular population genetics of ref(2)P, a locus which confers viral resistance in Drosophila Mol Biol Evol 13 1996 191 199
25. J. Bangham, D.J. Obbard, K.W. Kim, P.R. Haddrill, and F.M. Jiggins The age and evolution of an antiviral resistance mutation in Drosophila melanogaster Proc Roy Soc B-Biol Sci 274 2007 2027 2034
26. M.M. Magwire, F. Bayer, C.L. Webster, C.A. Cao, and F.M. Jiggins Successive increases in the resistance of Drosophila to viral infection through a transposon insertion followed by a duplication PLoS Genet 2011 7
27. Y.T. Aminetzach, J.M. Macpherson, and D.A. Petrov Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila Science 309 2005 764 767
28. M.M. Magwire, D.K. Fabian, H. Schweyen, C. Cao, B. Longdon, F. Bayer, and F.M. Jiggins Genome-wide association studies reveal a simple genetic basis of resistance to naturally coevolving viruses in Drosophila melanogaster PLoS Genet 8 2012 e1003057
29. N.E. Martins, V.G. Faria, V. Nolte, C. Schlötterer, L. Teixeira, É. Sucena, and S. Magalhães Host adaptation to viruses relies on few genes with different cross-resistance properties Proc Natl Acad Sci 111 2014 5938 5943 10.1073/pnas.1400378111
30. A. Ashe, T. Belicard, J. Le Pen, P. Sarkies, L. Frezal, N.J. Lehrbach, M.A. Felix, and E.A. Miska A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity Elife 2013 2
31. L. Lambrechts, E. Quillery, V. Noël, J.H. Richardson, R.G. Jarman, T.W. Scott, and C. Chevillon Specificity of resistance to dengue virus isolates is associated with genotypes of the mosquito antiviral gene Dicer-2 Proc Roy Soc B Biol Sci 2013 280
32. S. Asser-Kaiser, E. Fritsch, K. Undorf-Spahn, J. Kienzle, K.E. Eberle, N.A. Gund, A. Reineke, C.P.W. Zebitz, D.G. Heckel, and J. Huber et al. Rapid emergence of baculovirus resistance in codling moth due to dominant, sex-linked inheritance Science 317 2007 1916 1918
33. S. Asser-Kaiser, P. Radtke, S. El-Salamouny, D. Winstanley, and J.A. Jehle Baculovirus resistance in codling moth (Cydia pomonella L.) caused by early block of virus replication Virology 410 2011 360 367
34. S. Dutta, S. Biswas, K. Mukherjee, U. Chakrabarty, A. Mallik, and N. Mandal Identification of RAPD-SCAR marker linked to white spot syndrome virus resistance in populations of giant black tiger shrimp, Penaeus monodon Fabricius J Fish Dis 37 2014 471 480
35. U. Chakrabarty, A. Mallik, D. Mondal, S. Dutta, and N. Mandal Assessment of WSSV prevalence and distribution of disease-resistant shrimp among the wild population of Penaeus monodon along the west coast of India J Invertebrate Pathol 119 2014 12 18
36. A. Fleuriet Factors affecting the frequency of infection by the Sigma virus is experimental populations of Drosophila melanogaster Arch Virol 73 1982 121 133
37. J.S. Cory, and J.H. Myers The ecology and evolution of insect baculoviruses Annu Rev Ecol Evol Syst 34 2003 239 272
38. I. Wijkamp, N. Almarza, R. Goldbach, and D. Peters Distinct levels of specificity in thrips transmission of Tospoviruses Phytopathology 85 1995 1069 1074
39. R.M. Moudy, M.A. Meola, L.L.L. Morin, G.D. Ebel, and L.D. Kramer A newly emergent genotype of west Nile virus is transmitted earlier and more efficiently by Culex mosquitoes Am J Trop Med Hyg 77 2007 365 370
40. A.C. Brault, A.M. Powers, D. Ortiz, J.G. Estrada-Franco, R. Navarro-Lopez, and S.C. Weaver Venezuelan equine encephalitis emergence: Enhanced vector infection from a single amino acid substitution in the envelope glycoprotein Proc Natl Acad Sci U S A 101 2004 11344 11349
41. K.A. Tsetsarkin, and S.C. Weaver Sequential adaptive mutations enhance efficient vector switching by chikungunya virus and its epidemic emergence PLoS Pathogens 2011 7
42. B. Longdon, J.D. Hadfield, C.L. Webster, D.J. Obbard, and F.M. Jiggins Host phylogeny determines viral persistence and replication in novel hosts PLoS Pathogens 2011 7
43. L. Lambrechts, C. Chevillon, R.G. Albright, B. Thaisomboonsuk, J.H. Richardson, R.G. Jarman, and T.W. Scott Genetic specificity and potential for local adaptation between dengue viruses and mosquito vectors BMC Evol Biol 2009 9
44. T. Fansiri, A. Fontaine, L. Diancourt, V. Caro, B. Thaisomboonsuk, J.H. Richardson, R.G. Jarman, A. Ponlawat, and L. Lambrechts Genetic mapping of specific interactions between Aedes aegypti mosquitoes and dengue viruses PLoS Genet 9 2013 e1003621
45. L. Wilfert, and F.M. Jiggins The dynamics of reciprocal selective sweeps of host resistance and a parasite counter-adaptation in Drosophila Evolution 67 2013 761 773
46. J.A. Carpenter, D.J. Obbard, X. Maside, and F.M. Jiggins The recent spread of a vertically transmitted virus through populations of Drosophila melanogaster Mol Ecol 16 2007 3947 3954
47. L. Wilfert, and F.M. Jiggins Flies on the move: an inherited virus mirrors Drosophila melanogaster's elusive ecology and demography Mol Ecol 23 2014 2093 2104
48. A. Fleuriet, and G. Periquet Evolution of the Drosophila melanogaster Sigma virus system in natural populations from Languedoc (Souther France) Arch Virol 129 1993 131 143
49. A. Fleuriet, and D. Sperlich Evolution of the Drosophila melanogaster Sigma virus system in natural population from Tubingen Theor Appl Genet 85 1992 186 189
50. B. Longdon, L. Wilfert, D.J. Obbard, and F.M. Jiggins Rhabdoviruses in two species of Drosophila: vertical transmission and a recent sweep Genetics 188 2011 141 150
51. R. Robles-Sikisaka, A.J. Bohonak, L.R. McClenaghan Jr., and A.K. Dhar Genetic signature of rapid IHHNV (infectious hypodermal and hematopoietic necrosis virus) expansion in wild penaeus shrimp populations PLoS ONE 5 2010 e11799
52. Z.H. Yang, R. Nielsen, N. Goldman, and A.M.K. Pedersen Codon-substitution models for heterogeneous selection pressure at amino acid sites Genetics 155 2000 431 449
53. S. Kryazhimskiy, and J.B. Plotkin The population genetics of dN/dS PLoS Genet 4 2008 e1000304
54. C. Tusche, L. Steinbruck, and A.C. McHardy Detecting patches of protein sites of influenza A viruses under positive selection Mol Biol Evol 29 2012 2063 2071
55. G. Palacios, J. Hui, P.L. Quan, A. Kalkstein, K.S. Honkavuori, A.V. Bussetti, S. Conlan, J. Evans, Y.P. Chen, and D. vanEngelsdorp et al. Genetic analysis of israel acute paralysis virus: distinct clusters are circulating in the United States J Virol 82 2008 6209 6217
56. C. Allen, J.A. Briano, L. Varone, D.H. Oi, and S.M. Valles Exploitation of a high genomic mutation rate in Solenopsis invicta virus 1 to infer demographic information about its host, Solenopsis invicta J Invertebrate Pathol 105 2010 105 111
57. J.O. Wertheim, K.F.J. Tang, S.A. Navarro, and D.V. Lightner A quick fuse and the emergence of Taura syndrome virus Virology 390 2009 324 329
58. A. Baker, and D. Schroeder Occurrence and genetic analysis of picorna-like viruses infecting worker bees of Apis mellifera L. populations in Devon, South West England J Invertebrate Pathol 98 2008 239 242
59. E. Forsgren, J. Miranda, M. Isaksson, S. Wei, and I. Fries Deformed wing virus associated with Tropilaelaps mercedesae infesting European honey bees (Apis mellifera) Exp Appl Acarol 47 2009 87 97
60. O. Berényi, T. Bakonyi, I. Derakhshifar, H. Köglberger, G. Topolska, W. Ritter, H. Pechhacker, and N. Nowotny Phylogenetic analysis of deformed wing virus genotypes from diverse geographic origins indicates recent global distribution of the virus Appl Environ Microbiol 73 2007 3605 3611
61. R. Singh, A.L. Levitt, E.G. Rajotte, E.C. Holmes, N. Ostiguy, D. vanEngelsdorp, W.I. Lipkin, C.W. dePamphilis, A.L. Toth, and D.L. Cox-Foster RNA viruses in hymenopteran pollinators: evidence of inter-taxa virus transmission via pollen and potential impact on non-apis hymenopteran species PLoS ONE 5 2010 e14357
62. M. Kapun, V. Nolte, T. Flatt, and C. Schlötterer Host range and specificity of the Drosophila C virus PLoS ONE 5 2010 e12421
63. D.Y. Kim, H. Guzman, R. Bueno, J.A. Dennett, A.J. Auguste, C.V.F. Carrington, V.L. Popov, S.C. Weaver, D.W.C. Beasley, and R.B. Tesh Characterization of Culex Flavivirus (Flaviviridae) strains isolated from mosquitoes in the United States and Trinidad Virology 386 2009 154 159
64. E.V. Ryabov, G.R. Wood, J.M. Fannon, J.D. Moore, J.C. Bull, D. Chandler, A. Mead, N. Burroughs, and D.J. Evans A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission PLoS Pathog 10 2014 e1004230
65. C.H. Woelk, and E.C. Holmes Reduced positive selection in vector-borne RNA viruses Mol Biol Evol 19 2002 2333 2336
66. E.R. Chare, and E.C. Holmes Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission J Gen Virol 85 2004 3149 3157
67. G.G. Murray, S.L. Kosakovsky Pond, and D.J. Obbard Suppressors of RNAi from plant viruses are subject to episodic positive selection Proc Roy Soc B 280 1765 2013 20130965
68. A. Fraile, and F. Garcia-Arenal The coevolution of plants and viruses: resistance and pathogenicity J.P. Carr, G. Loebenstein, Natural and Engineered Resistance to Plant Viruses, Pt Ii. vol. 76 2010 Advances in Virus Research 1 32
69. P. Luijckx, H. Fienberg, D. Duneau, and D. Ebert A matching-allele model explains host resistance to parasites Curr Biol 23 2013 1085 1088
70. M.F. Dybdahl, C.E. Jenkins, and S.L. Nuismer Identifying the molecular basis of host-parasite coevolution: merging models and mechanisms Am Nat 184 2014 1 13
71. B. Murrell, S. Moola, A. Mabona, T. Weighill, D. Sheward, S.L. Kosakovsky Pond, and K. Scheffler FUBAR: a fast, unconstrained bayesian approximation for inferring selection Mol Biol Evol 30 2013 1196 1205
72. S.L. Kosakovsky Pond, S.D.W. Frost, and S.V. Muse HyPhy: hypothesis testing using phylogenies Bioinformatics 21 2005 676 679
73. S.L. Kosakovsky Pond, D. Posada, M.B. Gravenor, C.H. Woelk, and S.D.W. Frost GARD: a genetic algorithm for recombination detection Bioinformatics 22 2006 3096 3098
74. J.D. Hadfield MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package J Statistical Software 33 2010 1 22