메뉴 건너뛰기




Volumn 9, Issue 8, 2014, Pages 1867-1881

Quantitative analysis of triple-mutant genetic interactions

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE; PROTEIN ASF1; UNCLASSIFIED DRUG;

EID: 84904964372     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2014.127     Document Type: Article
Times cited : (14)

References (50)
  • 1
    • 0035861532 scopus 로고    scopus 로고
    • Systematic genetic analysis with ordered arrays of yeast deletion mutants
    • Tong, A.H. et al. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294, 2364-2368 (2001
    • (2001) Science , vol.294 , pp. 2364-2368
    • Tong, A.H.1
  • 2
    • 10744230485 scopus 로고    scopus 로고
    • Global mapping of the yeast genetic interaction network
    • Tong, A.H. et al. Global mapping of the yeast genetic interaction network. Science 303, 808-813 (2004
    • (2004) Science , vol.303 , pp. 808-813
    • Tong, A.H.1
  • 3
    • 77956046092 scopus 로고    scopus 로고
    • Quantitative genetic interaction mapping using the E-MAP approach
    • Collins, S.R., Roguev, A. & Krogan, N.J. Quantitative genetic interaction mapping using the E-MAP approach. Methods Enzymol. 470, 205-231 (2010
    • (2010) Methods Enzymol , vol.470 , pp. 205-231
    • Collins, S.R.1    Roguev, A.2    Krogan, N.J.3
  • 4
    • 26844489762 scopus 로고    scopus 로고
    • Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile
    • Schuldiner, M. et al. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell 123, 507-519 (2005
    • (2005) Cell , vol.123 , pp. 507-519
    • Schuldiner, M.1
  • 5
    • 50849098825 scopus 로고    scopus 로고
    • Esga: E coli synthetic genetic array analysis
    • Butland, G. et al. eSGA: E. coli. synthetic genetic array analysis. Nat. Methods 5, 789-795 (2008
    • (2008) Nat. Methods , vol.5 , pp. 789-795
    • Butland, G.1
  • 6
    • 50849125711 scopus 로고    scopus 로고
    • High-Throughput, quantitative analyses of genetic interactions in E. Coli
    • Typas, A. et al. High-Throughput, quantitative analyses of genetic interactions in E. coli. Nat. Methods 5, 781-787 (2008
    • (2008) Nat. Methods , vol.5 , pp. 781-787
    • Typas, A.1
  • 7
    • 84874113985 scopus 로고    scopus 로고
    • A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility
    • Bassik, M.C. et al. A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility. Cell 152, 909-922 (2013
    • (2013) Cell , vol.152 , pp. 909-922
    • Bassik, M.C.1
  • 8
    • 84877262605 scopus 로고    scopus 로고
    • Quantitative genetic-interaction mapping in mammalian cells
    • Roguev, A. et al. Quantitative genetic-interaction mapping in mammalian cells. Nat. Methods 10, 432-437 (2013
    • (2013) Nat. Methods , vol.10 , pp. 432-437
    • Roguev, A.1
  • 9
    • 35848940244 scopus 로고    scopus 로고
    • High-Throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe
    • Roguev, A., Wiren, M., Weissman, J.S. & Krogan, N.J. High-Throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe. Nat. Methods 4, 861-866 (2007
    • (2007) Nat. Methods , vol.4 , pp. 861-866
    • Roguev, A.1    Wiren, M.2    Weissman, J.S.3    Krogan, N.J.4
  • 10
    • 84861967537 scopus 로고    scopus 로고
    • Hierarchical modularity and the evolution of genetic interactomes across species
    • Ryan, C.J. et al. Hierarchical modularity and the evolution of genetic interactomes across species. Mol. Cell 46, 691-704 (2012
    • (2012) Mol. Cell , vol.46 , pp. 691-704
    • Ryan, C.J.1
  • 11
    • 8644224853 scopus 로고    scopus 로고
    • A robust toolkit for functional profiling of the yeast genome
    • Pan, X. et al. A robust toolkit for functional profiling of the yeast genome. Mol. Cell 16, 487-496 (2004
    • (2004) Mol. Cell , vol.16 , pp. 487-496
    • Pan, X.1
  • 12
    • 33644778778 scopus 로고    scopus 로고
    • A DNA integrity network in the yeast Saccharomyces cerevisiae
    • Pan, X. et al. A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 124, 1069-1081 (2006
    • (2006) Cell , vol.124 , pp. 1069-1081
    • Pan, X.1
  • 13
    • 77954385031 scopus 로고    scopus 로고
    • A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking
    • Aguilar, P.S. et al. A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking. Nat. Struct. Mol. Biol. 17, 901-908 (2010
    • (2010) Nat. Struct. Mol. Biol , vol.17 , pp. 901-908
    • Aguilar, P.S.1
  • 14
    • 34147217542 scopus 로고    scopus 로고
    • Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
    • Collins, S.R. et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature 446, 806-810 (2007
    • (2007) Nature , vol.446 , pp. 806-810
    • Collins, S.R.1
  • 15
    • 61349119934 scopus 로고    scopus 로고
    • Functional organization of the S. Cerevisiae phosphorylation network
    • Fiedler, D. et al. Functional organization of the S. cerevisiae phosphorylation network. Cell 136, 952-963 (2009
    • (2009) Cell , vol.136 , pp. 952-963
    • Fiedler, D.1
  • 16
    • 56849094282 scopus 로고    scopus 로고
    • A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing
    • Wilmes, G.M. et al. A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Mol. Cell 32, 735-746 (2008
    • (2008) Mol. Cell , vol.32 , pp. 735-746
    • Wilmes, G.M.1
  • 17
    • 33750845099 scopus 로고    scopus 로고
    • Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions
    • Schuldiner, M., Collins, S.R., Weissman, J.S. & Krogan, N.J. Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions. Methods 40, 344-352 (2006
    • (2006) Methods , vol.40 , pp. 344-352
    • Schuldiner, M.1    Collins, S.R.2    Weissman, J.S.3    Krogan, N.J.4
  • 18
    • 84882895575 scopus 로고    scopus 로고
    • From structure to systems: High-resolution, quantitative genetic analysis of RNA polymerase II
    • Braberg, H et al. From structure to systems: High-resolution, quantitative genetic analysis of RNA polymerase II. Cell 154, 775-788 (2013
    • (2013) Cell , vol.154 , pp. 775-788
    • Braberg, H.1
  • 19
    • 84882669269 scopus 로고    scopus 로고
    • A lipid e-map identifies ubx2 as a critical regulator of lipid saturation and lipid bilayer stress
    • Surma, M.A. et al. A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress. Mol. Cell 51, 519-530 (2013
    • (2013) Mol. Cell , vol.51 , pp. 519-530
    • Surma, M.A.1
  • 20
    • 77953236579 scopus 로고    scopus 로고
    • Quantitative genetic interactions reveal biological modularity
    • Beltrao, P., Cagney, G. & Krogan, N.J. Quantitative genetic interactions reveal biological modularity. Cell 141, 739-745 (2010
    • (2010) Cell , vol.141 , pp. 739-745
    • Beltrao, P.1    Cagney, G.2    Krogan, N.J.3
  • 21
    • 0034574613 scopus 로고    scopus 로고
    • The yeast mitotic cyclin Clb2 cannot substitute for S-phase cyclins in replication origin firing
    • Donaldson, A.D. The yeast mitotic cyclin Clb2 cannot substitute for S-phase cyclins in replication origin firing. EMBO Rep. 1, 507-512 (2000
    • (2000) EMBO Rep , vol.1 , pp. 507-512
    • Donaldson, A.D.1
  • 22
    • 84879795576 scopus 로고    scopus 로고
    • Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation
    • Haber, J.E. et al. Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation. Cell Rep. 3, 2168-2178 (2013
    • (2013) Cell Rep , vol.3 , pp. 2168-2178
    • Haber, J.E.1
  • 23
    • 0033961808 scopus 로고    scopus 로고
    • Cln1 and its repression by xbp1 are important for efficient sporulation in budding yeast
    • Mai, B. & Breeden, L. CLN1 and its repression by Xbp1 are important for efficient sporulation in budding yeast. Mol. Cell Biol. 20, 478-487 (2000
    • (2000) Mol. Cell Biol , vol.20 , pp. 478-487
    • Mai, B.1    Breeden, L.2
  • 24
    • 0032487521 scopus 로고    scopus 로고
    • Clb5-Associated kinase activity is required early in the spindle pathway for correct preanaphase nuclear positioning in Saccharomyces cerevisiae
    • Segal, M., Clarke, D.J. & Reed, S.I. Clb5-Associated kinase activity is required early in the spindle pathway for correct preanaphase nuclear positioning in Saccharomyces cerevisiae. J. Cell Biol. 143, 135-145 (1998
    • (1998) J. Cell Biol , vol.143 , pp. 135-145
    • Segal, M.1    Clarke, D.J.2    Reed, S.I.3
  • 25
    • 79958071595 scopus 로고    scopus 로고
    • S-phase cyclin-dependent kinases promote sister chromatid cohesion in budding yeast
    • Hsu, W.S. et al. S-phase cyclin-dependent kinases promote sister chromatid cohesion in budding yeast. Mol. Cell Biol. 31, 2470-2483 (2011
    • (2011) Mol. Cell Biol , vol.31 , pp. 2470-2483
    • Hsu, W.S.1
  • 26
    • 0042191693 scopus 로고    scopus 로고
    • Elg1 a yeast gene required for genome stability, forms a complex related to replication factor c
    • Ben-Aroya, S., Koren, A., Liefshitz, B., Steinlauf, R. & Kupiec, M. ELG1, a yeast gene required for genome stability, forms a complex related to replication factor C. Proc. Natl. Acad. Sci. USA 100, 9906-9911 (2003
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9906-9911
    • Ben-Aroya, S.1    Koren, A.2    Liefshitz, B.3    Steinlauf, R.4    Kupiec, M.5
  • 27
    • 0033965418 scopus 로고    scopus 로고
    • A novel Rad24 checkpoint protein complex closely related to replication factor C
    • Green, C.M., Erdjument-Bromage, H., Tempst, P. & Lowndes, N.F. A novel Rad24 checkpoint protein complex closely related to replication factor C. Curr. Biology 10, 39-42 (2000
    • (2000) Curr Biology , vol.10 , pp. 39-42
    • Green, C.M.1    Erdjument-Bromage, H.2    Tempst, P.3    Lowndes, N.F.4
  • 28
    • 0035051062 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae CTF18 and CTF4 are required for sister chromatid cohesion
    • Hanna, J.S., Kroll, E.S., Lundblad, V. & Spencer, F.A. Saccharomyces cerevisiae CTF18 and CTF4 are required for sister chromatid cohesion. Mol. Cell Biol. 21, 3144-3158 (2001
    • (2001) Mol. Cell Biol , vol.21 , pp. 3144-3158
    • Hanna, J.S.1    Kroll, E.S.2    Lundblad, V.3    Spencer, F.A.4
  • 29
    • 0035947084 scopus 로고    scopus 로고
    • Identification of RFC(Ctf18p, Ctf8p, Dcc1p): An alternative RFC complex required for sister chromatid cohesion in S. Cerevisiae
    • Mayer, M.L., Gygi, S.P., Aebersold, R. & Hieter, P. Identification of RFC(Ctf18p, Ctf8p, Dcc1p): An alternative RFC complex required for sister chromatid cohesion in S. cerevisiae. Mol. Cell 7, 959-970 (2001
    • (2001) Mol. Cell , vol.7 , pp. 959-970
    • Mayer, M.L.1    Gygi, S.P.2    Aebersold, R.3    Hieter, P.4
  • 30
    • 0034903652 scopus 로고    scopus 로고
    • Chl12 (Ctf18) forms a novel replication factor C-related complex and functions redundantly with Rad24 in the DNA replication checkpoint pathway
    • Naiki, T., Kondo, T., Nakada, D., Matsumoto, K. & Sugimoto, K. Chl12 (Ctf18) forms a novel replication factor C-related complex and functions redundantly with Rad24 in the DNA replication checkpoint pathway. Mol. Cell Biol. 21, 5838-5845 (2001
    • (2001) Mol. Cell Biol , vol.21 , pp. 5838-5845
    • Naiki, T.1    Kondo, T.2    Nakada, D.3    Matsumoto, K.4    Sugimoto, K.5
  • 31
    • 67149112112 scopus 로고    scopus 로고
    • Chaperone-mediated pathway of proteasome regulatory particle assembly
    • Roelofs, J. et al. Chaperone-mediated pathway of proteasome regulatory particle assembly. Nature 459, 861-865 (2009
    • (2009) Nature , vol.459 , pp. 861-865
    • Roelofs, J.1
  • 32
    • 35848964068 scopus 로고    scopus 로고
    • Histone chaperones: An escort network regulating histone traffic
    • De Koning, L., Corpet, A., Haber, J.E. & Almouzni, G. Histone chaperones: An escort network regulating histone traffic. Nat. Struct. Mol. Biol. 14, 997-1007 (2007
    • (2007) Nat. Struct. Mol. Biol , vol.14 , pp. 997-1007
    • De Koning, L.1    Corpet, A.2    Haber, J.E.3    Almouzni, G.4
  • 33
    • 0031985051 scopus 로고    scopus 로고
    • Chromatin assembly factor i contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci
    • Enomoto, S. & Berman, J. Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci. Genes Dev. 12, 219-232 (1998
    • (1998) Genes Dev , vol.12 , pp. 219-232
    • Enomoto, S.1    Berman, J.2
  • 34
    • 8644256711 scopus 로고    scopus 로고
    • Activation of the DNA damage checkpoint in yeast lacking the histone chaperone anti-silencing function 1
    • Ramey, C.J. et al. Activation of the DNA damage checkpoint in yeast lacking the histone chaperone anti-silencing function 1. Mol. Cell Biol. 24, 10313-10327 (2004
    • (2004) Mol. Cell Biol , vol.24 , pp. 10313-10327
    • Ramey, C.J.1
  • 35
    • 0041903834 scopus 로고    scopus 로고
    • In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination
    • Sugawara, N., Wang, X. & Haber, J.E. In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination. Mol. Cell 12, 209-219 (2003
    • (2003) Mol. Cell , vol.12 , pp. 209-219
    • Sugawara, N.1    Wang, X.2    Haber, J.E.3
  • 36
    • 33846818840 scopus 로고    scopus 로고
    • Yeast Rtt109 promotes genome stability by acetylating histone H3 on lysine 56
    • Driscoll, R., Hudson, A & Jackson, S.P. Yeast Rtt109 promotes genome stability by acetylating histone H3 on lysine 56. Science 315, 649-652 (2007
    • (2007) Science , vol.315 , pp. 649-652
    • Driscoll, R.1    Hudson, A.2    Jackson, S.P.3
  • 37
    • 35348970835 scopus 로고    scopus 로고
    • Acetylation of lysine 56 of histone H3 catalyzed by RTT109 and regulated by ASF1 is required for replisome integrity
    • Han, J., Zhou, H., Li, Z., Xu, R.M. & Zhang, Z. Acetylation of lysine 56 of histone H3 catalyzed by RTT109 and regulated by ASF1 is required for replisome integrity. J. Biol. Chem. 282, 28587-28596 (2007
    • (2007) J. Biol. Chem , vol.282 , pp. 28587-28596
    • Han, J.1    Zhou, H.2    Li, Z.3    Xu, R.M.4    Zhang, Z.5
  • 38
    • 77949653925 scopus 로고    scopus 로고
    • Functional overlap between the structure-specific nucleases Yen1 and Mus81-Mms4 for DNA-damage repair in S. Cerevisiae
    • Blanco, M.G., Matos, J., Rass, U., Ip, S.C. & West, S.C. Functional overlap between the structure-specific nucleases Yen1 and Mus81-Mms4 for DNA-damage repair in S. cerevisiae. DNA Repair 9, 394-402 (2010
    • (2010) DNA Repair , vol.9 , pp. 394-402
    • Blanco, M.G.1    Matos, J.2    Rass, U.3    Ip, S.C.4    West, S.C.5
  • 39
    • 78650242581 scopus 로고    scopus 로고
    • Mus81 and Yen1 promote reciprocal exchange during mitotic recombination to maintain genome integrity in budding yeast
    • Ho, C.K., Mazon, G., Lam, A.F. & Symington, L.S. Mus81 and Yen1 promote reciprocal exchange during mitotic recombination to maintain genome integrity in budding yeast. Mol. Cell 40, 988-1000 (2010
    • (2010) Mol. Cell , vol.40 , pp. 988-1000
    • Ho, C.K.1    Mazon, G.2    Lam, A.F.3    Symington, L.S.4
  • 40
    • 77951246052 scopus 로고    scopus 로고
    • Overlapping roles for Yen1 and Mus81 in cellular Holliday junction processing
    • Tay, Y.D. & Wu, L. Overlapping roles for Yen1 and Mus81 in cellular Holliday junction processing. J. Biol. Chem. 285, 11427-11432 (2010
    • (2010) J. Biol. Chem , vol.285 , pp. 11427-11432
    • Tay, Y.D.1    Wu, L.2
  • 41
    • 0032161269 scopus 로고    scopus 로고
    • A suppressor of two essential checkpoint genes identifies a novel protein that negatively affects dNTP pools
    • Zhao, X., Muller, E.G. & Rothstein, R. A suppressor of two essential checkpoint genes identifies a novel protein that negatively affects dNTP pools. Mol. Cell 2, 329-340 (1998
    • (1998) Mol. Cell , vol.2 , pp. 329-340
    • Zhao, X.1    Muller, E.G.2    Rothstein, R.3
  • 42
    • 0034612501 scopus 로고    scopus 로고
    • Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters
    • Koranda, M., Schleiffer, A., Endler, L. & Ammerer, G. Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters. Nature 406, 94-98 (2000
    • (2000) Nature , vol.406 , pp. 94-98
    • Koranda, M.1    Schleiffer, A.2    Endler, L.3    Ammerer, G.4
  • 43
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816-821 (2012
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1
  • 44
    • 0029843408 scopus 로고    scopus 로고
    • Identification of a Saccharomyces cerevisiae Ku80 homologue: Roles in DNA double strand break rejoining and in telomeric maintenance
    • Boulton, S.J. & Jackson, S.P. Identification of a Saccharomyces cerevisiae Ku80 homologue: Roles in DNA double strand break rejoining and in telomeric maintenance. Nucleic Acids Res. 24, 4639-4648 (1996
    • (1996) Nucleic Acids Res , vol.24 , pp. 4639-4648
    • Boulton, S.J.1    Jackson, S.P.2
  • 45
    • 0033565609 scopus 로고    scopus 로고
    • Role of yeast SIR genes and mating type in directing DNA double-strand breaks to homologous and non-homologous repair paths
    • Lee, S.E., Paques, F., Sylvan, J. & Haber, J.E. Role of yeast SIR genes and mating type in directing DNA double-strand breaks to homologous and non-homologous repair paths. Curr. Biol. 9, 767-770 (1999
    • (1999) Curr. Biol , vol.9 , pp. 767-770
    • Lee, S.E.1    Paques, F.2    Sylvan, J.3    Haber, J.E.4
  • 46
    • 0029976325 scopus 로고    scopus 로고
    • Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae
    • Moore, J.K. & Haber, J.E. Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae. Mol. Cell Biol. 16, 2164-2173 (1996
    • (1996) Mol. Cell Biol , vol.16 , pp. 2164-2173
    • Moore, J.K.1    Haber, J.E.2
  • 47
    • 0242468933 scopus 로고    scopus 로고
    • Yeast mre11 and rad1 proteins define a ku-independent mechanism to repair double-strand breaks lacking overlapping end sequences
    • Ma, J.L., Kim, E.M., Haber, J.E. & Lee, S.E. Yeast Mre11 and Rad1 proteins define a Ku-independent mechanism to repair double-strand breaks lacking overlapping end sequences. Mol. Cell Biol. 23, 8820-8828 (2003
    • (2003) Mol. Cell Biol , vol.23 , pp. 8820-8828
    • Ma, J.L.1    Kim, E.M.2    Haber, J.E.3    Lee, S.E.4
  • 48
    • 84877303028 scopus 로고    scopus 로고
    • Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
    • Laufer, C., Fischer, B., Billmann, M., Huber, W. & Boutros, M. Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping. Nat. Methods 10, 427-431 (2013
    • (2013) Nat. Methods , vol.10 , pp. 427-431
    • Laufer, C.1    Fischer, B.2    Billmann, M.3    Huber, W.4    Boutros, M.5
  • 49
    • 84888626405 scopus 로고    scopus 로고
    • Modernizing the nonhomologous end-joining repertoire: Alternative and classical nhej share the stage
    • Deriano, L. & Roth, D.B. Modernizing the nonhomologous end-joining repertoire: Alternative and classical NHEJ share the stage. Annu. Rev. Genet. 47, 433-455 (2013
    • (2013) Annu. Rev. Genet , vol.47 , pp. 433-455
    • Deriano, L.1    Roth, D.B.2
  • 50
    • 33747367151 scopus 로고    scopus 로고
    • A strategy for extracting and analyzing large-scale quantitative epistatic interaction data
    • Collins, S.R., Schuldiner, M., Krogan, N.J. & Weissman, J.S. A strategy for extracting and analyzing large-scale quantitative epistatic interaction data. Genome Biol. 7, R63 (2006
    • (2006) Genome Biol , vol.7
    • Collins, S.R.1    Schuldiner, M.2    Krogan, N.J.3    Weissman, J.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.