Chiral electronic transitions in fluorescent silver clusters stabilized by DNA

ACS Nano

Volumn 8, Issue 7, 2014, Pages 6883-6892

  Swasey, Steven M ^a   Karimova, Natalia ^b   Aikens, Christine M ^b   Schultz, Danielle E ^a   Simon, Anna J ^a   Gwinn, Elisabeth G ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b KANSAS STATE UNIVERSITY   (United States)

Author keywords

Ag DNA; anisotropy; circular dichroism; DNA templated clusters; fluorescent silver clusters; time dependent density functional theory

Indexed keywords

ANISOTROPY; DICHROISM; FLUORESCENCE; LIGHT POLARIZATION; QUANTUM CHEMISTRY; STEREOCHEMISTRY;

AG-DNA; CHIROPTICAL PROPERTIES; CIRCULAR DICHROISM SPECTRA; DNA-TEMPLATED CLUSTERS; ELECTRONIC TRANSITION; QUANTUM CHEMICAL CALCULATIONS; SILVER CLUSTER; TIME DEPENDENT DENSITY FUNCTIONAL THEORY;

DNA;

DNA; NANOMATERIAL; SILVER; SOLVENT;

CHEMICAL STRUCTURE; CHEMISTRY; COLOR; CONFORMATION; LIGHT RELATED PHENOMENA; QUANTUM THEORY; SEMICONDUCTOR;

COLOR; DNA; MODELS, MOLECULAR; MOLECULAR CONFORMATION; NANOSTRUCTURES; OPTICAL PROCESSES; QUANTUM THEORY; SILVER; SOLVENTS; TRANSISTORS, ELECTRONIC;

EID: 84904743383     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/nn5016067     Document Type: Article

References (53)

1. Lu, F.; Tian, Y.; Liu, M.; Su, D.; Zhang, H.; Govorov, A. O.; Gang, O. Discrete Nanocubes as Plasmonic Reporters of Molecular Chirality Nano Lett. 2013, 13, 3145-3151
2. Farrag, M.; Tschurl, M.; Heiz, U. Chiral Gold and Silver Nanoclusters: Preparation, Size Selection, and Chiroptical Properties Chem. Mater. 2013, 25, 862-870
3. Lopez-Acevedo, O.; Tsunoyama, H.; Tsukuda, T. Chirality and Electronic Structure of the Thiolate-Protected Au38 Nanocluster J. Am. Chem. Soc. 2010, 132, 8210-8218
4. Knoppe, S.; Dolamic, I.; Bürgi, T. Racemization of a Chiral Nanoparticle Evidences the Flexibility of the Gold-Thiolate Interface J. Am. Chem. Soc. 2012, 134, 13114-13120
5. Dolamic, I.; Knoppe, S.; Dass, A.; Bürgi, T. First Enantioseparation and Circular Dichroism Spectra of Au38 Clusters Protected by Achiral Ligands Nat. Commun. 2012, 3, 798
6. Ravindran, A.; Chandran, P.; Khan, S. S. Biofunctionalized Silver Nanoparticles: Advances and Prospects Colloids Surf. B: Biointerfaces 2013, 105, 342-352
7. Kuzyk, A.; Schreiber, R.; Fan, Z.; Pardatscher, G.; Roller, E.; Högele, A.; Simmel, F. C.; Govorov, A. O.; Liedl, T. DNA-Based Self-Assembly of Chiral Plasmonic Nanostructures with Tailored Optical Response Nature 2012, 483, 311-314
8. Chandra, M.; Dowgiallo, A.-M.; Knappenberger, K. L. Magnetic Dipolar Interactions in Solid Gold Nanosphere Dimers J. Am. Chem. Soc. 2012, 134, 4477-4480
9. Caro, C.; Castillo, P. M.; Klippstein, R.; Pozo, D.; Zaderenko, A. P. Silver Nanoparticles: Sensing and Imaging Applications. In Silver Nanoparticles; Perez, D. P., Ed.; InTech, 2010; pp 202-223.
10. Latorre, A.; Somoza, á. DNA-Mediated Silver Nanoclusters: Synthesis, Properties and Applications ChemBioChem 2012, 13, 951-958
11. Han, B.; Wang, E. DNA-Templated Fluorescent Silver Nanoclusters Anal. Bioanal. Chem. 2012, 402, 129-138
12. Udayabhaskararao, T.; Pradeep, T. New Protocols for the Synthesis of Stable Ag and Au Nanocluster Molecules J. Phys. Chem. Lett. 2013, 4, 1553-1564
13. Aikens, C. M. Electronic Structure of Ligand-Passivated Gold and Silver Nanoclusters J. Phys. Chem. Lett. 2011, 2, 99-104
14. Johnson, H. E.; Aikens, C. M. Electronic Structure and TDDFT Optical Absorption Spectra of Silver Nanorods J. Phys. Chem. A 2009, 113, 4445-4450
15. Guidez, E. B.; Aikens, C. M. Theoretical Analysis of the Optical Excitation Spectra of Silver and Gold Nanowires Nanoscale 2012, 4, 4190-4198
16. Yan, J.; Gao, S. Plasmon Resonances in Linear Atomic Chains: Free-Electron Behavior and Anisotropic Screening of D Electrons Phys. Rev. B 2008, 78, 235413
17. Petty, J. T.; Fan, C.; Story, S. P.; Sengupta, B.; John, A. S.; Prudowsky, Z.; Dickson, R. M. DNA Encapsulation of Ten Silver Atoms J. Phys. Chem. Lett. 2011, 1, 2524-2529
18. Schultz, D.; Gwinn, E. G. Silver Atom and Strand Numbers in Fluorescent and Dark Ag:DNAs Chem. Commun. (Cambridge, UK) 2012, 48, 5748-5750
19. Schultz, D.; Gardner, K.; Oemrawsingh, S. S. R.; Markešević , N.; Olsson, K.; Debord, M.; Bouwmeester, D.; Gwinn, E. Evidence for Rod-Shaped DNA-Stabilized Silver Nanocluster Emitters Adv. Mater. 2013, 25, 2797-2803
20. Copp, S. M.; Schultz, D.; Swasey, S.; Pavlovich, J.; Debord, M.; Chiu, A.; Olsson, K.; Gwinn, E. Magic Numbers in DNA-Stabilized Fluorescent Silver Clusters Lead to Magic Colors J. Phys. Chem. Lett. 2014, 5, 959-963
21. Neidig, M. L.; Sharma, J.; Yeh, H.; Martinez, J. S.; Conradson, S. D.; Shreve, A. P. Ag K-Edge EXAFS Analysis of DNA-Templated Fluorescent Silver by DNA Sequence Variations J. Am. Chem. Soc. 2011, 133, 11837-11839
22. Petty, J. T.; Fan, C.; Story, S. P.; Sengupta, B.; Sartin, M.; Hsiang, J.; Perry, J. W.; Dickson, R. M. Optically Enhanced, near-IR, Silver Cluster Emission Altered by Single Base Changes in the DNA Template J. Phys. Chem. B 2011, 115, 7996-8003
23. Sharma, J.; Rocha, R. C.; Phipps, M. L.; Yeh, H.; Balatsky, K. A.; Vu, D. M.; Shreve, A. P.; Werner, J. H.; Martinez, J. S. A DNA-Templated Fluorescent Silver Nanocluster with Enhanced Stability Nanoscale 2012, 4, 4107-4110
24. Lan, G.; Chen, W.; Chang, H. One-Pot Synthesis of Fluorescent Oligonucleotide Ag Nanoclusters for Specific and Sensitive Detection of DNA Biosens. Bioelectron. 2011, 26, 2431-2435
25. Petty, J. T.; Zheng, J.; Hud, N. V.; Dickson, R. M. DNA-Templated Ag Nanocluster Formation J. Am. Chem. Soc. 2004, 126, 5207-5212
26. Kypr, J.; Kejnovská, I.; Renciuk, D.; Vorlícková, M. Circular Dichroism and Conformational Polymorphism of DNA Nucleic Acids Res. 2009, 37, 1713-1725
27. Edwards, E. L.; Ratliff, R. L.; Gray, D. M. Circular Dichroism Spectra of DNA Oligomers Show That Short Interior Stretches of C.C+ Base Pairs Do Not Form in Duplexes with A.T Base Pairs Biochemistry 1988, 27, 5166-5174
28. Studdert, D. S.; Patroni, M.; Davis, R. C. Circular Dichroism of DNA: Temperature and Salt Dependence Biopolymers 1972, 11, 761-779
29. Ono, A.; Cao, S.; Togashi, H.; Tashiro, M.; Fujimoto, T.; Machinami, T.; Oda, S.; Miyake, Y.; Okamoto, I.; Tanaka, Y. Specific Interactions between silver(I) Ions and Cytosine-Cytosine Pairs in DNA Duplexes Chem. Commun. (Cambridge, UK) 2008, 4825-4827
30. Nordén, B.; Matsuoka, Y.; Kurucsev, T. Nucleic Acid-Metal Interactions: V. The Effect of Silver(I) on the Structures of A- and B-DNA Forms Biopolymers 1986, 25, 1531-1545
31. Menzer, S.; Sabat, M.; Lippert, B. Ag (I) Modified Base Pairs Involving Complementary (G, C) and Noncomplementary (A, C) Nucleobases. on the Possible Structural Role of Aqua Ligands in Metal-Modified Nucleobase Pairs J. Am. Chem. Soc. 1992, 114, 4644-4649
32. Zavriev, S. K.; Minchenkova, L. E.; Vorlickova, M.; Kolchinsky, A. M.; Volkenstein, M. W.; Ivanov, V. I. Circular Dichroism Anisotropy of DNA with Different Modifications at N7 of Guanine Biochim. Biophys. Acta 1979, 564, 212-224
33. Berova, N.; Di Bari, L.; Pescitelli, G. Application of Electronic Circular Dichroism in Configurational and Conformational Analysis of Organic Compounds Chem. Soc. Rev. 2007, 36, 914-931
34. O'Neill, P. R.; Gwinn, E. G.; Fygenson, D. K. UV Excitation of DNA Stabilized Ag Cluster Fluorescence via the DNA Bases J. Phys. Chem. C 2011, 115, 24061-24066
35. Ramazanov, R. R.; Kononov, A. I. Excitation Spectra Argue for Threadlike Shape of DNA-Stabilized Silver Fluorescent Clusters J. Phys. Chem. C 2013, 117, 18681-18687
36. Fan, Z.; Govorov, A. O. Chiral Nanocrystals: Plasmonic Spectra and Circular Dichroism Nano Lett. 2012, 12, 3283-3289
37. Govorov, A. O. Plasmon-Induced Circular Dichroism of a Chiral Molecule in the Vicinity of Metal Nanocrystals. Application to Various Geometries J. Phys. Chem. C 2011, 115, 7914-7923
38. Maoz, B. M.; van der Weegen, R.; Fan, Z.; Govorov, A. O.; Ellestad, G.; Berova, N.; Meijer, E. W.; Markovich, G. Plasmonic Chiroptical Response of Silver Nanoparticles Interacting with Chiral Supramolecular Assemblies J. Am. Chem. Soc. 2012, 134, 17807-17813
39. Maoz, B.; Chaikin, Y.; Tesler, A.; Elli, O. B. Amplification of Chiroptical Activity of Chiral Biomolecules by Surface Plasmons Nano Lett. 2013, 13, 1203-1209
40. Li, Z.; Zhu, Z.; Liu, W.; Zhou, Y.; Han, B. Reversible Plasmonic Circular Dichroism of Au Nanorod and DNA Assemblies J. Am. Chem. Soc. 2012, 134, 3322-3325
41. Govorov, A. O.; Fan, Z.; Hernandez, P.; Slocik, J. M.; Naik, R. R. Theory of Circular Dichroism of Nanomaterials Comprising Chiral Molecules and Nanocrystals: Plasmon Enhancement, Dipole Interactions, and Dielectric Effects Nano Lett. 2010, 10, 1374-1382
42. Nordén, B.; Kurucsev, T. Analysing DNA Complexes by Circular and Linear Dichroism J. Mol. Recognit. 1994, 7, 141-155
43. Petty, J. T.; Sergev, O. O.; Nicholson, D. A.; Goodwin, P. M.; Giri, B.; McMullan, D. R. A Silver Cluster-DNA Equilibrium Anal. Chem. 2013, 85, 9868-9876
44. Spink, C. H.; Garbett, N.; Chaires, J. B. Enthalpies of DNA Melting in the Presence of Osmolytes Biophys. Chem. 2007, 126, 176-185
45. Son, I.; Shek, Y. L.; Dubins, D. N.; Chalikian, T. V. Hydration Changes Accompanying Helix-to-Coil DNA Transitions J. Am. Chem. Soc. 2014, 136, 4040-4047
46. Schultz, D.; Copp, S. M.; Markešević, N.; Gardner, K.; Oemrawsingh, S. S. R.; Bouwmeester, D.; Gwinn, E. Dual-Color Nanoscale Assemblies of Structurally Stable, Few-Atom Silver Clusters, As Reported by Fluorescence Resonance Energy Transfer ACS Nano 2013, 7, 9798-9807
47. Bishop, G. R.; Chaires, J. B. Characterization of DNA Structures by Circular Dichroism Curr. Protoc. Nucleic Acid Chem. 2003, 11, 7.11.1-7.11.8
48. Te Velde, G.; Bickelhaupt, F. M.; Baerends, E. J.; Fonseca Guerra, C.; van Gisbergen, S. J. A.; Snijders, J. G.; Ziegler, T. Chemistry with ADF J. Comput. Chem. 2001, 22, 931-967
49. Van Lenthe, E.; van Leeuwen, R.; Baerends, E. J.; Snijders, J. G. Relativistic Regular Two-Component Hamiltonians Int. J. Quantum Chem. 1994, 57, 281-293
50. Schipper, P. R. T.; Grittsenko, O. V.; van Gisbergen, S. J. A.; Baerends, E. J. Molecular Calculations of Excitation Energies and (Hyper) Polarizabilities with a Statistical Average of Orbital Model Exchange-Correlation Potentials J. Chem. Phys. 2000, 112, 1344-1352
51. Autschbach, J.; Ziegler, T.; van Gisbergen, S. J. A.; Baerends, E. J. Chiroptical Properties from Time-Dependent Density Functional Theory. I. Circular Dichroism Spectra of Organic Molecules J. Chem. Phys. 2002, 116, 6930
52. Crawford, T. D. Ab Initio Calculation of Molecular Chiroptical Properties Theor. Chem. Acc. 2005, 115, 227-245
53. Woody, R. Circular Dichroism Methods Enzymol. 1995, 246, 34-71