A silver cluster-DNA equilibrium

Analytical Chemistry

Volumn 85, Issue 20, 2013, Pages 9868-9876

  Petty, Jeffrey T ^a   Sergev, Orlin O ^a   Nicholson, David A ^a   Goodwin, Peter M ^a,b   Giri, Banabihari ^a   McMullan, D Ryan ^a  

^a FURMAN UNIVERSITY   (United States)

^b LOS ALAMOS NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY STRAND; EQUILIBRIUM SHIFT; HYBRID NANOMATERIALS; ISOSBESTIC POINT; MOLECULAR SENSORS; RECOGNITION SITE; SINGLE-STRANDED DNA; VAN'T HOFF ANALYSIS;

CHROMATOGRAPHY; OLIGONUCLEOTIDES; PURIFICATION; SENSORS;

DNA;

DNA; SILVER;

ABSORPTION; ARTICLE; CHEMISTRY; GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; THERMODYNAMICS;

ABSORPTION; BASE SEQUENCE; DNA; NUCLEIC ACID HYBRIDIZATION; SILVER; THERMODYNAMICS;

EID: 84886918327     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac4028559     Document Type: Article

References (62)

1. de Heer, W. A. Rev. Mod. Phys. 1993, 65, 611-676
2. Aikens, C. M. J. Phys. Chem. Lett. 2011, 2, 99-104
3. Parker, J. F.; Fields-Zinna, C. A.; Murray, R. W. Acc. Chem. Res. 2010, 43, 1289-1296
4. Qian, H.; Zhu, M.; Wu, Z.; Jin, R. Acc. Chem. Res. 2012, 45, 1470-1479
5. Bonacic-Koutecky, V.; Veyret, V.; Mitric, R. J. Chem. Phys. 2001, 115, 10450-10460
6. Schmidt, M.; Cahuzac, P.; Bréchignac, C.; Cheng, H.-P. J. Chem. Phys. 2003, 118, 10956-10962
7. Link, S.; El-Sayed, M. A. Annu. Rev. Phys. Chem. 2003, 54, 331-366
8. Richards, C. I.; Choi, S.; Hsiang, J.-C.; Antoku, Y.; Vosch, T.; Bongiorno, A.; Tzeng, Y.-L.; Dickson, R. M. J. Am. Chem. Soc. 2008, 130, 5038-5039
9. Yu, J.; Patel, S. A.; Dickson, R. M. Angew. Chem., Int. Ed. 2007, 46, 1927-2121
10. Han, B. Y.; Wang, E. K. Anal. Bioanal. Chem. 2012, 402, 129-138
11. Obliosca, J. M.; Liu, C.; Batson, R. A.; Babin, M. C.; Werner, J. H.; Yeh, H.-C. Biosensors 2013, 3, 185-200
12. Petty, J. T.; Story, S. P.; Hsiang, J. C.; Dickson, R. M. J. Phys. Chem. Lett. 2013, 4, 1148-1155
13. Sharma, J.; Yeh, H. C.; Yoo, H.; Werner, J. H.; Martinez, J. S. Chem. Commun. 2010, 46, 3280-3282
14. Petty, J. T.; Fan, C.; Story, S. P.; Sengupta, B.; St. John Iyer, A.; Prudowsky, Z.; Dickson, R. M. J. Phys. Chem. Lett. 2010, 1, 2524-2529
15. Lavis, L. D.; Raines, R. T. ACS Chem. Biol. 2008, 3, 142-155
16. Vosch, T.; Antoku, Y.; Hsiang, J.-C.; Richards, C. I.; Gonzalez, J. I.; Dickson, R. M. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 12616-12621
17. Patel, S. A.; Cozzuol, M.; Hales, J. M.; Richards, C. I.; Sartin, M.; Hsiang, J.-C.; Vosch, T.; Perry, J. W.; Dickson, R. M. J. Phys. Chem. C 2009, 113, 20264-20270
18. Petty, J. T.; Fan, C.; Story, S. P.; Sengupta, B.; Sartin, M.; Hsiang, J.-C.; Perry, J. W.; Dickson, R. M. J. Phys. Chem. B 2011, 115, 7996-8003
19. Richards, C. I.; Hsiang, J.-C.; Senapati, D.; Patel, S.; Yu, J.; Vosch, T.; Dickson, R. M. J. Am. Chem. Soc. 2009, 131, 4619-4621
20. Petty, J. T.; Zheng, J.; Hud, N. V.; Dickson, R. M. J. Am. Chem. Soc. 2004, 126, 5207-5212
21. Ritchie, C. M.; Johnsen, K. R.; Kiser, J. R.; Antoku, Y.; Dickson, R. M.; Petty, J. T. J. Phys. Chem. C 2007, 111, 175-181
22. Soto-Verdugo, V.; Metiu, H.; Gwinn, E. J. Chem. Phys. 2010, 132, 195102
23. Sengupta, B.; Springer, K.; Buckman, J. G.; Story, S. P.; Abe, O. H.; Hasan, Z. W.; Prudowsky, Z. D.; Rudisill, S. E.; Degtyareva, N. N.; Petty, J. T. J. Phys. Chem. C 2009, 113, 19518-19524
24. Gwinn, E. G.; O'Neill, P.; Guerrero, A. J.; Bouwmeester, D.; Fygenson, D. K. Adv. Mater. 2008, 20, 279-283
25. O'Neill, P. R.; Velazquez, L. R.; Dunn, D. G.; Gwinn, E. G.; Fygenson, D. K. J. Phys. Chem. C 2009, 113, 4229-4233
26. Driehorst, T.; O'Neill, P.; Goodwin, P. M.; Pennathur, S.; Fygenson, D. K. Langmuir 2011, 27, 8923-8933
27. Petty, J. T.; Giri, B.; Miller, I. C.; Nicholson, D. A.; Sergev, O. O.; Banks, T. M.; Story, S. P. Anal. Chem. 2013, 85, 2183-2190
28. Lippert, B. Coord. Chem. Rev. 2000, 200-202, 487-516
29. Giljohann, D. A.; Seferos, D. S.; Daniel, W. L.; Massich, M. D.; Patel, P. C.; Mirkin, C. A. Angew. Chem., Int. Ed. 2010, 49, 3280-3294
30. Sonnichsen, C.; Reinhard, B. M.; Liphardt, J.; Alivisatos, A. P. Nat. Biotechnol. 2005, 23, 741-745
31. Bloomfield, V. A.; Crothers, D. M.; Tinoco, I., Jr. Nucleic Acids: Structures, Properties, and Functions; University Science Books: Sausaltio, CA, 2000.
32. Gueron, M.; Leroy, J. L. Curr. Opin. Struct. Biol. 2000, 10, 326-331
33. Petty, J. T.; Story, S. P.; Juarez, S.; Votto, S. S.; Herbst, A. G.; Degtyareva, N. N.; Sengupta, B. Anal. Chem. 2012, 84, 356-364
34. Jensen, R. H.; Davidson, N. Biopolymers 1966, 4, 17-32
35. Mergny, J.-L.; Lacroix, L. Oligonucleotides 2003, 13, 515-537
36. Sengupta, B.; Ritchie, C. M.; Buckman, J. G.; Johnsen, K. R.; Goodwin, P. M.; Petty, J. T. J. Phys. Chem. C 2008, 112, 18776-18782
37. Widengren, J.; Mets, U.; Rigler, R. J. Phys. Chem. 1995, 99, 13368-13379
38. Gendron, P. O.; Avaltroni, F.; Wilkinson, K. J. J. Fluoresc. 2008, 18, 1093-1101
39. Phan, A. T.; Gueron, M.; Leroy, J. L. Methods Enzymol. 2001, 338, 341-371
40. Jin, R.; Qian, H.; Wu, Z.; Zhu, Y.; Zhu, M.; Mohanty, A.; Garg, N. J. Phys. Chem. Lett. 2010, 1, 2903-2910
41. Schultz, D.; Gwinn, E. G. Chem. Commun. 2012, 48, 5748-5750
42. Guo, J.; Kumar, S.; Bolan, M.; Desireddy, A.; Bigioni, T. P.; Griffith, W. P. Anal. Chem. 2012, 84, 5304-5308
43. Harb, M.; Rabilloud, F.; Simon, D.; Rydlo, A.; Lecoultre, S.; Conus, F.; Rodrigues, V.; Felix, C. J. Chem. Phys. 2008, 129, 194108
44. Martinez, J. I.; Fernandez, E. M. Eur. Phys. J. D 2009, 52, 199-202
45. Liu, C. W.; Feng, C.-S.; Fu, R.-J.; Chang, H.-W.; Saillard, J.-Y.; Kahlal, S.; Wang, J.-C.; Chang, I. J. Inorg. Chem. 2010, 49, 4934-4941
46. McNaught, A. D.; Wilkinson, A. Compendium of Chemical Terminology, Second ed.; Blackwell Scientific Publications: Oxford, 1997.
47. Manning, G. S. Q. Rev. Biophys. 1978, 11, 179-246
48. Sim, A. Y. L.; Lipfert, J.; Herschlag, D.; Doniach, S. Phys. Rev. E 2012, 86, 021901
49. Akers, G. K. In The Proteins; Neurath, H.; Hill, R. L., Eds.; Academic Press: New York, 1975; Vol. 1, p 547.
50. Yeh, H. C.; Sharma, J.; Han, J. J.; Martinez, J. S.; Werner, J. H. Nano Lett. 2010, 10, 3106-3110
51. Petty, J. T.; Sengupta, B.; Story, S. P.; Degtyareva, N. N. Anal. Chem. 2011, 83, 5957-5964
52. Yang, S. W.; Vosch, T. Anal. Chem. 2011, 83, 6935-6939
53. Lan, G.-Y.; Chen, W.-Y.; Chang, H.-T. Biosens. Bioelectron. 2011, 26, 2431-2435
54. Neidig, M. L.; Sharma, J.; Yeh, H.-C.; Martinez, J. S.; Conradson, S. D.; Shreve, A. P. J. Am. Chem. Soc. 2011, 133, 11837-11839
55. Parker, J. F.; Choi, J.-P.; Wang, W.; Murray, R. W. J. Phys. Chem. C 2008, 112, 13976-13981
56. Tlahuice-Flores, A.; Whetten, R. L.; Jose-Yacaman, M. J. Phys. Chem. C 2013, 117, 12191-12198
57. Provorse, M. R.; Aikens, C. M. J. Am. Chem. Soc. 2010, 132, 1302-1310
58. Rist, M. J.; Marino, J. P. Curr. Org. Chem. 2002, 6, 775
59. Lilley, D. M. J. Q. Rev. Biophys. 2000, 33, 109-159
60. Takezawa, Y.; Shionoya, M. Acc. Chem. Res. 2012, 45, 2066-2076
61. Sivakova, S.; Rowan, S. J. Chem. Soc. Rev. 2005, 34, 9-21
62. Wang, K.; Tang, Z.; Yang, C. J.; Kim, Y.; Fang, X.; Li, W.; Wu, Y.; Medley, C. D.; Cao, Z.; Li, J.; Colon, P.; Lin, H.; Tan, W. Angew. Chem., Int. Ed. 2009, 48, 856-870