Molecular cloning and optimization for high level expression of cold-adapted serine protease from antarctic yeast glaciozyma antarctica PI12

Enzyme Research

Volumn 2014, Issue , 2014, Pages

  Alias, Norsyuhada ^a   Ahmad Mazian, Mu'Adz ^a   Salleh, Abu Bakar ^a   Basri, Mahiran ^a   Rahman, Raja Noor Zaliha Raja Abd ^a  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL OXIDASE; AMINO ACID; COMPLEMENTARY DNA; MATING HORMONE ALPHA FACTOR; MESSENGER RNA; METHANOL; RECOMBINANT ENZYME; SERINE PROTEINASE;

ARTICLE; BASIDIOMYCETES; CONTROLLED STUDY; CULTURE MEDIUM; EXON; EXPRESSION VECTOR; FUNGAL GENE; FUNGAL GENOME; FUNGUS CULTURE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; GENE AMPLIFICATION; GENE ISOLATION; GENE SEQUENCE; GLACIOZYMA ANTARCTICA (STRAIN PI12); INTRON; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PI12 PROTEASE GENE; PICHIA PASTORIS; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROMOTER REGION; PROTEIN EXPRESSION; RHODOSPORIDIUM TORULOIDES; RNA SEQUENCE; SACCHAROMYCES CEREVISIAE; UNINDEXED SEQUENCE;

EID: 84904685039     PISSN: 20900406     EISSN: 20900414     Source Type: Journal    
DOI: 10.1155/2014/197938     Document Type: Article

References (39)

1. Deming J. W., Psychrophiles and polar regions. Current Opinion in Microbiology 2002 5 3 301 309 2-s2.0-0036270790 10.1016/S1369-5274(02)00329-6 (Pubitemid 34614943)
2. Gerday C., Aittaleb M., Bentahir M., Chessa J.-P., Claverie P., Collins T., D'Amico S., Dumont J., Garsoux G., Georlette D., Hoyoux A., Lonhienne T., Meuwis M.-A., Feller G., Cold-adapted enzymes: from fundamentals to biotechnology. Trends in Biotechnology 2000 18 3 103 107 2-s2.0-0034159939 10.1016/S0167-7799(99)01413-4 (Pubitemid 30110702)
3. Svingor Á., Kardos J., Hajdú I., Németh A., Závodszky P., A better enzyme to cope with cold: comparative flexibility studies on psychrotrophic, mesophilic, and thermophilic IPMDHS. The Journal of Biological Chemistry 2001 276 30 28121 28125 2-s2.0-0035958914 10.1074/jbc.M104432200
4. Antranikian G., Vorgias C. E., Bertoldo C., Extreme environments as a resource for microorganisms and novel biocatalysts. Advances in Biochemical Engineering/Biotechnology 2005 96 219 262 2-s2.0-27844612307 10.1007/b135786 (Pubitemid 44617135)
5. Lonhienne T., Gerday C., Feller G., Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibility. Biochimica et Biophysica Acta 2000 1543 1 1 10 2-s2.0-0034736285 10.1016/S0167-4838(00)00210-7
6. Cavicchioli R., Thomas T., Extremophiles. Encyclopedia of Microbiology 2000 San Diego, Calif, USA Academic Press 317 337
7. Feller G., Narinx E., Arpigny J. L., Aittaleb M., Baise E., Genicot S., Gerday C., Enzymes from psychrophilic organisms. FEMS Microbiology Reviews 1996 18 2-3 189 202 2-s2.0-0029883360 (Pubitemid 126352646)
8. Arnórsdóttir J., Smáradóttir R. B., Magnússon T. Ó., Thorbjarnardóttir S. H., Eggertsson G., Kristjánsson M. M., Characterization of a cloned subtilisin-like serine proteinase from a psychrotrophic Vibrio species. European Journal of Biochemistry 2002 269 22 5536 5546 (Pubitemid 35370027)
9. Russell N. J., Psychrophilic bacteria-molecular adaptations of membrane lipids. Comparative Biochemistry and Physiology A: Physiology 1997 118 3 489 493 2-s2.0-0031279440 10.1016/S0300-9629(97)87354-9 (Pubitemid 28012274)
10. Feller G., Gerday C., Psychrophilic enzymes: hot topics in cold adaptation. Nature Reviews Microbiology 2003 1 3 200 208 2-s2.0-1842509102
11. Raspor P., Zupan J., Yeasts in extreme environments. Biodiversity and Ecophysiology of Yeasts: The Yeast Handbook 2006 Berlin, Germany Springer 371 417
12. Rao M. B., Tanksale A. M., Ghatge M. S., Deshpande V. V., Molecular and biotechnological aspects of microbial proteases. Microbiology and Molecular Biology Reviews 1998 62 3 597 635 2-s2.0-0031686839 (Pubitemid 28415546)
13. Polgár L., The catalytic triad of serine peptidases. Cellular and Molecular Life Sciences 2005 62 19-20 2161 2172 2-s2.0-27144523783 10.1007/s00018-005-5160-x (Pubitemid 41500536)
14. Boo S. Y., Wong C. M. V. L., Rodrigues K. F., Najimudin N., Murad A. M. A., Mahadi N. M., Thermal stress responses in Antarctic yeast, Glaciozyma antarctica PI12, characterized by real-time quantitative PCR. Polar Biology 2013 36 3 381 389 2-s2.0-84873994571 10.1007/s00300-012-1268-2
15. Turchetti B., Hall S. R. T., Connell L. B., Branda E., Buzzini P., Theelen B., Müller W. H., Boekhout T., Psychrophilic yeasts from Antarctica and European glaciers: description of Glaciozyma gen. nov., Glaciozyma martinii sp. nov. and Glaciozyma watsonii sp. nov. Extremophiles 2011 15 5 573 586 2-s2.0-84860413148 10.1007/s00792-011-0388-x
16. Hashim N. H. F., Bharudin I., Nguong D. L. S., Higa S., Bakar F. D. A., Nathan S., Rabu A., Kawahara H., Illias R. M., Najimudin N., Mahadi N. M., Murad A. M. A., Characterization of Afp1, an antifreeze protein from the psychrophilic yeast Glaciozyma antarctica PI12. Extremophiles 2013 17 1 63 73 2-s2.0-84871432968 10.1007/s00792-012-0494-4
17. Ramli A. N. M., Azhar M. A., Shamsir M. S., Rabu A., Murad A. M. A., Mahadi N. M., Md. Illias R., Sequence and structural investigation of a novel psychrophilic α -amylase from Glaciozyma antarctica PI12 for cold-adaptation analysis. Journal of Molecular Modeling 2013 19 8 3369 3383 2-s2.0-84880814465 10.1007/s00894-013-1861-5
18. Ramli A. N. M., Mahadi N. M., Rabu A., Murad A. M. A., Bakar F. D. A., Illias R. M., Molecular cloning, expression and biochemical characterisation of a cold-adapted novel recombinant chitinase from Glaciozyma antarctica PI12. Microbial Cell Factories 2011 10 1, article 94 2-s2.0-80155123418 10.1186/1475-2859-10-94
19. Sambrook J., Fritsch E., Maniatis T., Molecular Cloning: A Laboratory Manual 1989 New York, NY, USA Cold Spring Harbor Laboratory Press
20. Brock F. M., Forsberg C. W., Buchanan-Smith J. G., Proteolytic activity of rumen microorganisms and effects of proteinase inhibitors. Applied and Environmental Microbiology 1982 44 3 561 569 2-s2.0-0019967719 (Pubitemid 12065609)
21. Laemmli U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970 227 5259 680 685 2-s2.0-0014949207 10.1038/227680a0
22. Henne A., Schmitz R. A., Bömeke M., Gottschalk G., Daniel R., Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli. Applied and Environmental Microbiology 2000 66 7 3113 3116 2-s2.0-0033916660 10.1128/AEM.66.7.3113-3116.2000 (Pubitemid 30497628)
23. Poza M., de Miguel T., Sieiro C., Villa T. G., Characterization of a broad pH range protease of Candida caseinolytica. Journal of Applied Microbiology 2001 91 5 916 921 2-s2.0-0034772184 10.1046/j.1365-2672.2001.01458. x (Pubitemid 32989656)
24. Bendtsen J. D., Nielsen H., von Heijne G., Brunak S., Improved prediction of signal peptides: SignalP 3.0. Journal of Molecular Biology 2004 340 4 783 795 2-s2.0-3042521098 10.1016/j.jmb.2004.05.028 (Pubitemid 38829638)
25. Siezen R. J., Leunissen J. A. M., Subtilases: the superfamily of subtilisin-like serine proteases. Protein Science 1997 6 3 501 523 2-s2.0-0030896832 (Pubitemid 27120048)
26. Katakura Y., Zhang W., Zhuang G., Omasa T., Kishimoto M., Goto Y., Suga K.-I., Effect of methanol concentration on the production of human β 2- glycoprotein I domain V by a recombinant Pichia pastoris: a simple system for the control of methanol concentration using a semiconductor gas sensor. Journal of Fermentation and Bioengineering 1998 86 5 482 487 2-s2.0-0032416188 10.1016/S0922-338X(98)80156-6 (Pubitemid 29008737)
27. Wang Q.-F., Hou Y.-H., Xu Z., Miao J.-L., Li G.-Y., Purification and properties of an extracellular cold-active protease from the psychrophilic bacterium Pseudoalteromonas sp. NJ276. Biochemical Engineering Journal 2008 38 3 362 368 2-s2.0-38949092102 10.1016/j.bej.2007.07.025
28. Vazquez S., Ruberto L., Mac Cormack W., Properties of extracellular proteases from three psychrotolerant Stenotrophomonas maltophilia isolated from Antarctic soil. Polar Biology 2005 28 4 319 325 2-s2.0-16444370474 10.1007/s00300-004-0673-6 (Pubitemid 40473751)
29. Zeng R., Zhang R., Zhao J., Lin N., Cold-active serine alkaline protease from the psychrophilic bacterium Pseudomonas strain DY-A: enzyme purification and characterization. Extremophiles 2003 7 4 335 337 2-s2.0-1942427204 10.1007/s00792-003-0323-x (Pubitemid 40882715)
30. Turkiewicz M., Gromek E., Kalinowska H., Zielińska M., Biosynthesis and properties of an extracellular metalloprotease from the Antarctic marine bacterium Sphingomonas paucimobilis. Journal of Biotechnology 1999 70 1-3 53 60 2-s2.0-0033065920 10.1016/S0168-1656(99)00057-7 (Pubitemid 29299259)
31. Vassileva A., Chugh D. A., Swaminathan S., Khanna N., Effect of copy number on the expression levels of hepatitis B surface antigen in the methylotrophic yeast Pichia pastoris. Protein Expression and Purification 2001 21 1 71 80 2-s2.0-0034963608 10.1006/prep.2000.1335 (Pubitemid 32614498)
32. Pazgier M., Turkiewicz M., Kalinowska H., Bielecki S., The unique cold-adapted extracellular subtilase from psychrophilic yeast Leucosporidium antarcticum. Journal of Molecular Catalysis B: Enzymatic 2003 21 1-2 39 42 2-s2.0-0037413449 10.1016/S1381-1177(02)00134-0 (Pubitemid 35477585)
33. Turkiewicz M., Pazgier M., Kalinowska H., Bielecki S., A cold-adapted extracellular serine proteinase of the yeast Leucosporidium antarcticum. Extremophiles 2003 7 6 435 442 2-s2.0-4544247637 10.1007/s00792-003-0340-9 (Pubitemid 41512702)
34. Mattanovich D., Gasser B., Hohenblum H., Sauer M., Stress in recombinant protein producing yeasts. Journal of Biotechnology 2004 113 1-3 121 135 2-s2.0-4544253524 10.1016/j.jbiotec.2004.04.035 (Pubitemid 39237075)
35. Secades P., Alvarez B., Guijarro J. A., Purification and properties of a new psychrophilic metalloprotease (Fpp2) in the fish pathogen Flavobacterium psychrophilum. FEMS Microbiology Letters 2003 226 2 273 279 2-s2.0-0642347021 10.1016/S0378-1097(03)00599-8 (Pubitemid 38444951)
36. Ling L. Y., Ithoi I., Yik F. M., Optimization for high-level expression in Pichia pastoris and purification of truncated and full length recombinant sag2 of toxoplasma gondii for diagnostic use. Southeast Asian Journal of Tropical Medicine and Public Health 2010 41 3 507 513 2-s2.0-77954741586
37. Illanes A., Stability of biocatalysts. Electronic Journal of Biotechnology 1999 2 1 1 9 2-s2.0-33751178300
38. Plantz B. A., Sinha J., Villarete L., Nickerson K. W., Schlegel V. L., Pichia pastoris fermentation optimization: energy state and testing a growth-associated model. Applied Microbiology and Biotechnology 2006 72 2 297 305 2-s2.0-33747710813 10.1007/s00253-005-0271-8 (Pubitemid 44273052)
39. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S., MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 2013 30 12 2725 2729