Optical silencing of C. elegans cells with light-driven proton pumps

Methods

Volumn 68, Issue 3, 2014, Pages 425-430

  Okazaki, Ayako ^a   Takahashi, Megumi ^a   Toyoda, Naoya ^a   Takagi, Shin ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Arch; Bacteriorhodopsin; C. elegans; Optogenetics; Outward directed proton pump

Indexed keywords

AGAR; HALORHODOPSIN; PROTON PUMP; RETINAL;

ALUMINUM FOIL; ARTICLE; CAENORHABDITIS ELEGANS; CELL MEMBRANE; CHLORIDE PUMP; EXPERIMENT; EXPRESSION VECTOR; ILLUMINATION; IMAGE PROCESSING; LIGHT; LIGHT EXPOSURE; LIGHT INTENSITY; LIQUID CULTURE; MAMMAL CELL; NERVE CELL STIMULATION; NONHUMAN; OPTOGENETICS; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; ROOM TEMPERATURE; STORAGE TEMPERATURE; TRANSLATION INITIATION; ANIMAL; DRUG EFFECTS; GENETICS; NERVE CELL; NERVOUS SYSTEM; PROCEDURES; RADIATION RESPONSE;

CAENORHABDITIS ELEGANS;

ANIMALS; CAENORHABDITIS ELEGANS; LIGHT; NERVOUS SYSTEM; NEURONS; OPTOGENETICS; PROTON PUMPS;

EID: 84904619601     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2014.02.030     Document Type: Article

References (45)

1. Fenno L., Yizhar O., Deisseroth K. Annu. Rev. Neurosci. 2011, 34:389-412.
2. Boyden E.S. F1000 Biol. Rep. 2011, 3:11.
3. Miesenböck G. Science 2009, 326:395-399.
4. Riddle D.L. C. elegans II 1997, Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY). second ed.
5. White J.G., Southgate E., Thomson J.N., Brenner S. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 1986, 314:1-340.
6. Evans T.C. WormBook. WormBook 2006, 10.1895/wormbook.1.108.1.
7. Nagel G., Szellas T., Huhn W., Kateriya S., Adeishvili N., Berthold P., Ollig D., Hegemann P., Bamberg E. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:13940-13945.
8. Nagel G., Brauner M., Liewald J.F., Adeishvili N., Bamberg E., Gottschalk A. Curr. Biol. 2005, 15:2279-2284.
9. Husson S.J., Gottschalk A., Leifer A.M. Biol. Cell. 2013, 105:235-250.
10. Han X., Boyden E.S. PLoS One 2007, 2:e299.
11. Schobert B., Lanyi J.K. J. Biol. Chem. 1982, 257:10306-10313.
12. Zhang F., Wang L.P., Brauner M., Liewald J.F., Kay K., Watzke N., Wood P.G., Bamberg E., Nagel G., Gottschalk A., Deisseroth K. Nature 2007, 446:633-639.
13. Gradinaru V., Thompson K.R., Deisseroth K. Brain Cell. Biol. 2008, 36:129-139.
14. Chow B.Y., Han X., Dobry A.S., Qian X., Chuong A.S., Li M., Henninger M.A., Belfort G.M., Lin Y., Monahan P.E., Boyden E.S. Nature 2010, 463:98-102.
15. Han X., Chow B.Y., Zhou H., Klapoetke N.C., Chuong A., Rajimehr R., Yang A., Baratta M.V., Winkle J., Desimone R., Boyden E.S. Front. Syst. Neurosci. 2011, 5:18.
16. Okazaki A., Sudo Y., Takagi S. PLoS One 2012, 7:e35370.
17. Husson S.J., Liewald J.F., Schultheis C., Stirman J.N., Lu H., Gottschalk A. PLoS One 2012, 7:e40937.
18. Kocabas A., Shen C.H., Guo Z.V., Ramanathan S. Nature 2012, 490:273-277.
19. Okazaki A., Takagi S. Neurosci. Res. 2013, 75:29-34.
20. Sudo Y., Okazaki A., Ono H., Yagasaki J., Sugo S., Kamiya M., Reissig L., Inoue K., Ihara K., Kandori H., Takagi S., Hayashi S. J. Biol. Chem. 2013, 288:20624-20632.
21. Fire A., Harrison S.W., Dixon D. Gene 1990, 93:189-198.
22. Kuroyanagi H., Ohno G., Sakane H., Maruoka H., Hagiwara M. Nat. Protoc. 2010, 5:1495-1517.
23. Mello C., Fire A. Methods Cell. Biol. 1995, 48:451-482.
24. Okkema P.G., Harrison S.W., Plunger V., Aryana A., Fire A. Genetics 1993, 135:385-404.
25. Loria P.M., Hodgkin J., Hovert O. J. Neurosci. 2004, 24:2191-2201.
26. Wakabayashi T., Kimura Y., Ohba Y., Adachi R., Satoh Y., Shingai R. Biochim. Biophys. Acta 2009, 1790:765-769.
27. Maduro M., Pilgrim D. Genetics 1995, 141:977-988.
28. Huang L.S., Tzou P., Sternberg P.W. Mol. Biol. Cell. 1994, 5:395-411.
29. Kramer J.M., French R.P., Park E.C., Johnson J.J. Mol. Cell. Biol. 1990, 10:2081-2089.
30. Brenner S. Genetics 1974, 77:71-94.
31. Edwards S.L., Charlie N.K., Milfort M.C., Brown B.S., Gravlin C.N., Knecht J.E., Miller K.G. PLoS Biol. 2008, 6:e198.
32. Li W., Kang L., Piggott B.J., Feng Z., Xu X.Z.S. Nat. Commun. 2011, 2:315.
33. Wei X., Potter C.J., Luo L., Shen K. Nat. Methods 2012, 9:391-395.
34. Davis M.W., Morton J.J., Carroll D., Jorgensen E.M. PLoS Genet. 2008, 4:e1000028.
35. Voutev R., Hubbard E.J. Genetics 2008, 180:103-119.
36. Macosko E.Z., Pokala N., Feinberg E.H., Chalasani S.H., Butcher R.A., et al. Nature 2009, 458:1171-1175.
37. Suzuki M., Toyoda N., Takagi S. PLoS One 2014, 9:e85783.
38. Schmitt C., Schultheis C., Pokala N., Husson S.J., Liewald J.F., Bargmann C.I., Gottschalk A. PLoS One 2012, 7:e43164.
39. Kamei Y., Suzuki M., Watanabe K., Fujimori K., Kawasaki T., et al. Nat. Methods 2009, 6:79-81.
40. Suzuki M., Toyoda N., Shimojou M., Takagi S. Dev. Growth Differ. 2013, 55:454-461.
41. Churgin M.A., Liping H., Murray J.I., Fang-Yen C. G3(Bethesda) 2013, 3:1827-1832. 10.1534/g3.113.007682.
42. Mattis J., Tye K.M., Ferenczi E.A., Ramakrishnan C., O'Shea D.J., Prakash R., Gunaydin L.A., Hyun M., Fenno L.E., Gradinaru V., Yizhar O., Deisseroth K. Nat. Methods 2012, 9:159-172.
43. Stirman J.N., Crane M.M., Husson S.J., Wabnig S., Schultheis C., Gottschalk A., Lu H. Nat. Methods 2011, 8:153-158.
44. Leifer A.M., Fang-Yen C., Gershow M., Alkema M.J., Samuel A.D.T. Nat. Methods 2011, 8:147-152.
45. Husson S.J., Costa W.S., Schmitt C., Gottschalk A. WormBook 2013, 10.1895/wormbook.1.156.1.