메뉴 건너뛰기




Volumn 10, Issue 4, 2014, Pages 791-801

A model for quantitative trait loci mapping, linkage phase, and segregation pattern estimation for a full-sib progeny

Author keywords

Composite interval mapping; Full sib progeny; Genetic architecture; Mixture models; Outbred species

Indexed keywords


EID: 84904551191     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-013-0664-2     Document Type: Article
Times cited : (24)

References (65)
  • 2
    • 37249055906 scopus 로고    scopus 로고
    • A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in maize
    • Boer MP, Wright D, Feng L, Podlich DW, Luo L, Cooper M, van Eeuwijk FA (2007) A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in maize. Genetics 177: 1801-1813.
    • (2007) Genetics , vol.177 , pp. 1801-1813
    • Boer, M.P.1    Wright, D.2    Feng, L.3    Podlich, D.W.4    Luo, L.5    Cooper, M.6    van Eeuwijk, F.A.7
  • 3
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait loci
    • Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait loci. Genetics 138: 963-971.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 4
    • 0036250060 scopus 로고    scopus 로고
    • The use of molecular genetics in the improvement of agricultural populations
    • Dekkers JCM, Hospital F (2002) The use of molecular genetics in the improvement of agricultural populations. Nat Rev Genet 3: 22-32.
    • (2002) Nat Rev Genet , vol.3 , pp. 22-32
    • Dekkers, J.C.M.1    Hospital, F.2
  • 6
    • 59249100896 scopus 로고    scopus 로고
    • Mapping of QTL associated with maize weevil resistance in tropical maize
    • García-Lara S, Khairallah MM, Vargas M, Bergvinson DJ (2009) Mapping of QTL associated with maize weevil resistance in tropical maize. Crop Sci 49: 139-149.
    • (2009) Crop Sci , vol.49 , pp. 139-149
    • García-Lara, S.1    Khairallah, M.M.2    Vargas, M.3    Bergvinson, D.J.4
  • 7
    • 77951061382 scopus 로고    scopus 로고
    • QTL mapping of tropical maize grain components associated with maize weevil resistance
    • García-Lara S, Burt AJ, Arnason JT, Bergvinson DJ (2010) QTL mapping of tropical maize grain components associated with maize weevil resistance. Crop Sci 50: 815-825.
    • (2010) Crop Sci , vol.50 , pp. 815-825
    • García-Lara, S.1    Burt, A.J.2    Arnason, J.T.3    Bergvinson, D.J.4
  • 8
    • 0033506071 scopus 로고    scopus 로고
    • Multipoint genetic mapping of quantitative trait loci with dominant markers in outbred populations
    • Gessler DDG, Xu S (1999) Multipoint genetic mapping of quantitative trait loci with dominant markers in outbred populations. Genetica 105: 281-291.
    • (1999) Genetica , vol.105 , pp. 281-291
    • Gessler, D.D.G.1    Xu, S.2
  • 9
    • 0028136089 scopus 로고
    • Genetic linkage maps of eucalyptus grandis and eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers
    • Grattapaglia D, Sederoff R (1994) Genetic linkage maps of eucalyptus grandis and eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137: 1121-1137.
    • (1994) Genetics , vol.137 , pp. 1121-1137
    • Grattapaglia, D.1    Sederoff, R.2
  • 10
    • 0028219062 scopus 로고
    • Mapping quantitative trait loci in crosses between outbred lines using least squares
    • Haley CS, Knott SA, Elsen JM (1994) Mapping quantitative trait loci in crosses between outbred lines using least squares. Genetics 136: 1195-1207.
    • (1994) Genetics , vol.136 , pp. 1195-1207
    • Haley, C.S.1    Knott, S.A.2    Elsen, J.M.3
  • 11
    • 67349257945 scopus 로고    scopus 로고
    • Challenges for effective marker-assisted selection in plants
    • Hospital F (2009) Challenges for effective marker-assisted selection in plants. Genetica 136: 303-310.
    • (2009) Genetica , vol.136 , pp. 303-310
    • Hospital, F.1
  • 12
    • 78751650552 scopus 로고    scopus 로고
    • Proc qtl-a SAS procedure for mapping quantitative trait loci
    • doi:10.1155/2009/141234
    • Hu Z, Xu S (2009) Proc qtl-a SAS procedure for mapping quantitative trait loci. Int J Plant Genomics. doi: 10. 1155/2009/141234.
    • (2009) Int J Plant Genomics
    • Hu, Z.1    Xu, S.2
  • 13
    • 0028348164 scopus 로고
    • Resolution of quantitative traits into multiple loci via interval mapping
    • Jansen RC, Stam P (1994) Resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455.
    • (1994) Genetics , vol.136 , pp. 1447-1455
    • Jansen, R.C.1    Stam, P.2
  • 14
    • 0029022716 scopus 로고
    • Multiple trait analysis of genetic mapping for quantitative trait loci
    • Jiang C, Zeng ZB (1995) Multiple trait analysis of genetic mapping for quantitative trait loci. Genetics 140: 1111-1127.
    • (1995) Genetics , vol.140 , pp. 1111-1127
    • Jiang, C.1    Zeng, Z.B.2
  • 15
    • 0031423792 scopus 로고    scopus 로고
    • Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines
    • Jiang C, Zeng ZB (1997) Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines. Genetica 101: 47-58.
    • (1997) Genetica , vol.101 , pp. 47-58
    • Jiang, C.1    Zeng, Z.B.2
  • 16
    • 84904544252 scopus 로고    scopus 로고
    • Identification of quantitative trait loci in rice for yield, yield components, and agronomic traits across years and locations
    • Kao CH, Zeng ZB (1997) Identification of quantitative trait loci in rice for yield, yield components, and agronomic traits across years and locations. Biometrics 73: 75-83.
    • (1997) Biometrics , vol.73 , pp. 75-83
    • Kao, C.H.1    Zeng, Z.B.2
  • 17
    • 0032772555 scopus 로고    scopus 로고
    • Multiple interval mapping for quantitative trait loci
    • Kao CH, Zeng ZB, Teasdale RD (1999) Multiple interval mapping for quantitative trait loci. Genetics 152: 1203-1216.
    • (1999) Genetics , vol.152 , pp. 1203-1216
    • Kao, C.H.1    Zeng, Z.B.2    Teasdale, R.D.3
  • 18
    • 0026470910 scopus 로고
    • Maximum likelihood mapping of quantitative trait loci using full-sib families
    • Knott SA, Haley CS (1992) Maximum likelihood mapping of quantitative trait loci using full-sib families. Genetics 132: 1211-1222.
    • (1992) Genetics , vol.132 , pp. 1211-1222
    • Knott, S.A.1    Haley, C.S.2
  • 19
    • 0030982338 scopus 로고    scopus 로고
    • Multiple marker mapping of quantitative trait loci in an outbred pedigree of loblolly pine
    • Knott SA, Neale DB, Sewell MM, Haley CS (1997) Multiple marker mapping of quantitative trait loci in an outbred pedigree of loblolly pine. Theor Appl Genet 94: 810-820.
    • (1997) Theor Appl Genet , vol.94 , pp. 810-820
    • Knott, S.A.1    Neale, D.B.2    Sewell, M.M.3    Haley, C.S.4
  • 20
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugene 12: 172-175.
    • (1944) Ann Eugene , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 21
    • 0029046177 scopus 로고
    • Complete multipoint sib-pair analysis of qualitative and quantitative traits
    • Kruglyak L, Lander ES (1995) Complete multipoint sib-pair analysis of qualitative and quantitative traits. Am J Hum Genet 57: 439-454.
    • (1995) Am J Hum Genet , vol.57 , pp. 439-454
    • Kruglyak, L.1    Lander, E.S.2
  • 22
    • 0024508964 scopus 로고
    • Mapping mendelian factors underlying quantitative traits using RFLP linkage maps
    • Lander E, Botstein D (1989) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.1    Botstein, D.2
  • 23
    • 42449138241 scopus 로고    scopus 로고
    • Soybean QTL for yield and yield components associated with glycine soja alleles
    • Li D, Pfeiffer TW, Cornelius PL (2008) Soybean QTL for yield and yield components associated with glycine soja alleles. Crop Sci 48: 571-581.
    • (2008) Crop Sci , vol.48 , pp. 571-581
    • Li, D.1    Pfeiffer, T.W.2    Cornelius, P.L.3
  • 24
    • 0242286586 scopus 로고    scopus 로고
    • General statistical framework for mapping quantitative trait loci in nonmodel systems: issue for characterizing linkage phases
    • Lin M, Lou XY, Chang M, Wu R (2003) General statistical framework for mapping quantitative trait loci in nonmodel systems: issue for characterizing linkage phases. Genetics 165: 901-913.
    • (2003) Genetics , vol.165 , pp. 901-913
    • Lin, M.1    Lou, X.Y.2    Chang, M.3    Wu, R.4
  • 26
    • 25444525456 scopus 로고    scopus 로고
    • A multilocus likelihood approach to joint modeling of linkage, parental diplotype and gene order in a full-sib family
    • doi: 10. 1186/1471-2156-5-20
    • Lu Q, Cui Y, Wu R (2004) A multilocus likelihood approach to joint modeling of linkage, parental diplotype and gene order in a full-sib family. BMC Genet 5(20). doi: 10. 1186/1471-2156-5-20.
    • (2004) BMC Genet , vol.5 , Issue.20
    • Lu, Q.1    Cui, Y.2    Wu, R.3
  • 28
    • 0035671407 scopus 로고    scopus 로고
    • The genetic architecture of quantitative traits
    • Mackay TFC (2001) The genetic architecture of quantitative traits. Annu Rev Genet 35: 303-339.
    • (2001) Annu Rev Genet , vol.35 , pp. 303-339
    • Mackay, T.F.C.1
  • 29
    • 0031428566 scopus 로고    scopus 로고
    • Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications
    • Maliepaard C, Jansen J, van Ooijen JW (1997) Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications. Genet Res 70: 237-250.
    • (1997) Genet Res , vol.70 , pp. 237-250
    • Maliepaard, C.1    Jansen, J.2    van Ooijen, J.W.3
  • 30
    • 4544317910 scopus 로고    scopus 로고
    • Mixed models including environmental covariables for studying QTL by environment interaction
    • Malosetti M, Voltas J, Romagosa I, Ullrich SE, van Eeuwijk FA (2004) Mixed models including environmental covariables for studying QTL by environment interaction. Euphytica 137: 139-145.
    • (2004) Euphytica , vol.137 , pp. 139-145
    • Malosetti, M.1    Voltas, J.2    Romagosa, I.3    Ullrich, S.E.4    van Eeuwijk, F.A.5
  • 31
    • 42149128810 scopus 로고    scopus 로고
    • A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress trials in maize (zea mays l.)
    • Malosetti M, Ribaut JM, Vargas M, Crossa J, van Eeuwijk FA (2008) A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress trials in maize (zea mays l.). Euphytica 161: 241-257.
    • (2008) Euphytica , vol.161 , pp. 241-257
    • Malosetti, M.1    Ribaut, J.M.2    Vargas, M.3    Crossa, J.4    van Eeuwijk, F.A.5
  • 32
    • 34547190185 scopus 로고    scopus 로고
    • Onemap: software for genetic mapping in outcrossing species
    • Margarido GRA, Souza AP, Garcia AAF (2007) Onemap: software for genetic mapping in outcrossing species. Hereditas 144: 78-79.
    • (2007) Hereditas , vol.144 , pp. 78-79
    • Margarido, G.R.A.1    Souza, A.P.2    Garcia, A.A.F.3
  • 35
    • 69249218969 scopus 로고    scopus 로고
    • Drought stress and tropical maize: QTL-by-environment interactions and stability of QTLs across environments for yield components and secondary traits
    • Messmer R, Fracheboud Y, Bänziger M, Vargas M, Stamp P, Ribaut JM (2009) Drought stress and tropical maize: QTL-by-environment interactions and stability of QTLs across environments for yield components and secondary traits. Theor Appl Genet 119: 913-930.
    • (2009) Theor Appl Genet , vol.119 , pp. 913-930
    • Messmer, R.1    Fracheboud, Y.2    Bänziger, M.3    Vargas, M.4    Stamp, P.5    Ribaut, J.M.6
  • 38
    • 0031646326 scopus 로고    scopus 로고
    • Three-point linkage analysis in crosses of allogamous plant species
    • Ridout MS, Tong S, Vowden CJ, Tobutt KR (1998) Three-point linkage analysis in crosses of allogamous plant species. Genet Res 72: 111-121.
    • (1998) Genet Res , vol.72 , pp. 111-121
    • Ridout, M.S.1    Tong, S.2    Vowden, C.J.3    Tobutt, K.R.4
  • 39
    • 0029983450 scopus 로고    scopus 로고
    • The calculation of recombination frequencies in crosses of allogamous plant species with applications to linkage mapping
    • Ritter E, Salamini F (1996) The calculation of recombination frequencies in crosses of allogamous plant species with applications to linkage mapping. Genet Res 67: 55-65.
    • (1996) Genet Res , vol.67 , pp. 55-65
    • Ritter, E.1    Salamini, F.2
  • 40
    • 0025297781 scopus 로고
    • Estimation of recombination frequencies and construction RFLP linkage maps in plants from crosses between heterozygous parents
    • Ritter E, Gebhardt C, Salamini F (1990) Estimation of recombination frequencies and construction RFLP linkage maps in plants from crosses between heterozygous parents. Genetics 125: 645-654.
    • (1990) Genetics , vol.125 , pp. 645-654
    • Ritter, E.1    Gebhardt, C.2    Salamini, F.3
  • 41
    • 52249104418 scopus 로고    scopus 로고
    • QTL mapping for yield components in a tropical maize population using microsatellite markers
    • Sabadin PK, Souza Junior CL, Souza AP, GARCIA AAF (2008) QTL mapping for yield components in a tropical maize population using microsatellite markers. Hereditas 145: 194-203.
    • (2008) Hereditas , vol.145 , pp. 194-203
    • Sabadin, P.K.1    Souza Junior, C.L.2    Souza, A.P.3    Garcia, A.A.F.4
  • 43
    • 0029932726 scopus 로고    scopus 로고
    • Models for mapping quantitative trait loci (QTL) in progeny of non-inbredparents and their behaviour in presence of distorted segregation rations
    • Schäfer-Pregl R, Salamini F, Gebhardt C (1996) Models for mapping quantitative trait loci (QTL) in progeny of non-inbredparents and their behaviour in presence of distorted segregation rations. Genet Res 67: 43-54.
    • (1996) Genet Res , vol.67 , pp. 43-54
    • Schäfer-Pregl, R.1    Salamini, F.2    Gebhardt, C.3
  • 44
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz G (1978) Estimating the dimension of a model. Ann Stat 6: 461-464.
    • (1978) Ann Stat , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 45
    • 0031961421 scopus 로고    scopus 로고
    • Bayesian mapping of multiple quantitative trait loci from incomplete inbred line cross data
    • Sillanpää M, Arjas E (1998) Bayesian mapping of multiple quantitative trait loci from incomplete inbred line cross data. Genetics 148: 1373-1388.
    • (1998) Genetics , vol.148 , pp. 1373-1388
    • Sillanpää, M.1    Arjas, E.2
  • 46
    • 0032893464 scopus 로고    scopus 로고
    • Bayesian mapping of multiple quantitative trait loci from incomplete outbred offspring data
    • Sillanpää M, Arjas E (1999) Bayesian mapping of multiple quantitative trait loci from incomplete outbred offspring data. Genetics 151: 1605-1619.
    • (1999) Genetics , vol.151 , pp. 1605-1619
    • Sillanpää, M.1    Arjas, E.2
  • 48
    • 77957103199 scopus 로고    scopus 로고
    • A hidden Markov model approach to multilocus linkage analysis in a full-sib family
    • Tong C, Zhang B, Shi J (2010) A hidden Markov model approach to multilocus linkage analysis in a full-sib family. Tree Genet Genomes 6: 651-662.
    • (2010) Tree Genet Genomes , vol.6 , pp. 651-662
    • Tong, C.1    Zhang, B.2    Shi, J.3
  • 50
    • 27644585818 scopus 로고    scopus 로고
    • Statistical models for genotype by environment data: from conventional ANOVA models to eco-physiological QTL models
    • van Eeuwijk FA, Malosetti M, Yin X, Struik PC, Stam P (2005) Statistical models for genotype by environment data: from conventional ANOVA models to eco-physiological QTL models. Aust J Agric Res 56: 883-894.
    • (2005) Aust J Agric Res , vol.56 , pp. 883-894
    • van Eeuwijk, F.A.1    Malosetti, M.2    Yin, X.3    Struik, P.C.4    Stam, P.5
  • 51
    • 77953778829 scopus 로고    scopus 로고
    • Modelling the genetic basis of response curves underlying genotype × environment interaction
    • J. H. J. Spiertz, P. C. Struik, and H. H. Laarvan (Eds.), Dordrecht: Springer
    • van Eeuwijk FA, Malosetti M, Boer MP (2007) Modelling the genetic basis of response curves underlying genotype × environment interaction. In: Spiertz JHJ, Struik PC, van Laar HH (eds) Scale and complexity in plant systems research: gene-plant-crop relations. Springer, Dordrecht, pp 115-126.
    • (2007) Scale and Complexity in Plant Systems Research: Gene-Plant-Crop Relations , pp. 115-126
    • van Eeuwijk, F.A.1    Malosetti, M.2    Boer, M.P.3
  • 54
    • 79953027439 scopus 로고    scopus 로고
    • Identification of novel QTL contributing resistance to aflatoxin accumulation in maize
    • Warburton ML, Brooks TD, Windham GL, Williams WP (2011) Identification of novel QTL contributing resistance to aflatoxin accumulation in maize. Mol Breeding 27: 491-499.
    • (2011) Mol Breeding , vol.27 , pp. 491-499
    • Warburton, M.L.1    Brooks, T.D.2    Windham, G.L.3    Williams, W.P.4
  • 55
    • 0036581846 scopus 로고    scopus 로고
    • Simultaneous maximum likelihood estimation of linkage and linkage phases in outcrossing species
    • Wu R, Ma CX, Painter I, Zeng ZB (2002a) Simultaneous maximum likelihood estimation of linkage and linkage phases in outcrossing species. Theor Popul Biol 61: 349-363.
    • (2002) Theor Popul Biol , vol.61 , pp. 349-363
    • Wu, R.1    Ma, C.X.2    Painter, I.3    Zeng, Z.B.4
  • 56
    • 0036196448 scopus 로고    scopus 로고
    • Linkage mapping of sex-specific differences
    • Wu R, Ma CX, Wu SS, Zeng ZB (2002b) Linkage mapping of sex-specific differences. Genet Res 79: 85-96.
    • (2002) Genet Res , vol.79 , pp. 85-96
    • Wu, R.1    Ma, C.X.2    Wu, S.S.3    Zeng, Z.B.4
  • 59
    • 0028810715 scopus 로고
    • A random model approach to interval mapping to quantitative trait loci
    • Xu S, Atchley WR (1995) A random model approach to interval mapping to quantitative trait loci. Genetics 141: 1189-1197.
    • (1995) Genetics , vol.141 , pp. 1189-1197
    • Xu, S.1    Atchley, W.R.2
  • 60
    • 0031832823 scopus 로고    scopus 로고
    • Multipoint genetic mapping of quantitative trait loci using a variable number of sibs per family
    • Xu S, Gessler DDG (1998) Multipoint genetic mapping of quantitative trait loci using a variable number of sibs per family. Genet Res 71: 73-83.
    • (1998) Genet Res , vol.71 , pp. 73-83
    • Xu, S.1    Gessler, D.D.G.2
  • 61
    • 79952447849 scopus 로고    scopus 로고
    • Mapping quantitative trait loci for seed size traits in soybean (Glycine max L. Merr.)
    • Xu HN, Li Y, Li GJ, Wang X, Cheng LG, Zhang YM (2011) Mapping quantitative trait loci for seed size traits in soybean (Glycine max L. Merr.). Theor Appl Genet 122: 581-594.
    • (2011) Theor Appl Genet , vol.122 , pp. 581-594
    • Xu, H.N.1    Li, Y.2    Li, G.J.3    Wang, X.4    Cheng, L.G.5    Zhang, Y.M.6
  • 62
    • 0033152685 scopus 로고    scopus 로고
    • Mapping quantitative trait loci for complex binary traits in outbred populations
    • Yi N, Xu S (1999) Mapping quantitative trait loci for complex binary traits in outbred populations. Heredity 82: 668-676.
    • (1999) Heredity , vol.82 , pp. 668-676
    • Yi, N.1    Xu, S.2
  • 63
    • 84904569701 scopus 로고
    • Theoretical basis of precision mapping of quantitative trait loci
    • Zeng ZB (1993) Theoretical basis of precision mapping of quantitative trait loci. Proc Natl Acad Sci U S A 90: 10, 972-10, 976.
    • (1993) Proc Natl Acad Sci U S A , vol.90
    • Zeng, Z.B.1
  • 64
    • 0028224156 scopus 로고
    • Precision mapping of quantitative trait loci
    • Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
    • (1994) Genetics , vol.136 , pp. 1457-1468
    • Zeng, Z.B.1
  • 65
    • 0033386380 scopus 로고    scopus 로고
    • Estimating the genetic architecture of quantitative traits
    • Zeng ZB, Kao CH, Basten CJ (1999) Estimating the genetic architecture of quantitative traits. Genet Res 74: 279-289.
    • (1999) Genet Res , vol.74 , pp. 279-289
    • Zeng, Z.B.1    Kao, C.H.2    Basten, C.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.