A multilocus likelihood approach to joint modeling of linkage, parental diplotype and gene order in a full-sib family

BMC Genetics

Volumn 5, Issue , 2004, Pages

  Lu, Qing ^a   Cui, Yuehua ^a   Wu, Rongling ^a,b  

^a University of Florida   (United States)

^b ZHEJIANG A F UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; FAMILY STUDY; GENE MAPPING; GENE ORDER; GENETIC ALGORITHM; GENETIC LINKAGE; GENETIC MARKER; LINKAGE ANALYSIS; MAXIMUM LIKELIHOOD METHOD; OUTCROSSING; PROBABILITY; SIBLING; SIMULATION; SPECIES DIFFERENTIATION; STATISTICAL MODEL;

EID: 25444525456     PISSN: 14712156     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-5-20     Document Type: Article

References (20)

1. Flint J, Mott R: Finding the molecular basis of quantitative traits: Successes and pitfalls. Nat Rev Genet 2001, 2:437-445.
2. Lander ES, Green P: Construction of multilocus genetic linkage maps in humans. Proc Natl Acd Sci USA 1987, 84:2363-2367.
3. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L: MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1987, 1:174-181.
4. Green P, Falls K, Crooks S: Documentation for CRIMAP, version 2.4. Washington Univ. School of Medicine, St. Louis, MO. 1990.
5. Stam P: Construction of integrated genetic linkage maps by means of a new computer package: JOINMAP. Plant J 1993, 3:739-744.
6. Matise TC, Perlin M, Chakravarti A: Automated constrcution of genetic linkage maps using an expert system (MULTIMAP): a human genome linkage map. Nat Genet 1994, 6:384-390.
7. Hitter E, Gebhardt C, Salamini F: Estimation of recombination frequencies and construction of RFLP linkage maps in plants from crosses between heterozygous parents. Genetics 1990, 125:645-654.
8. Arus P, Olarte C, Romero M, Vargas F: Linkage analysis of 10 isozyme genes in Fl segregating almond progenies. J Am Soc Hort Sci 1994, 119:339-344.
9. Ritter E, Salamini F: The calculation of recombination frequencies in crosses of allogamous plant species with applications to linkage mapping. Genet Res 1996, 67:55-65.
10. Maliepaard C, Jansen J, van Ooijen JW: Linkage analysis in a fullsib family of an outbreeding plant species: overview and consequences for applications. Genet Res 1997, 70:237-250.
11. Wu RL, Ma CM, Painter I, Zeng ZB: Simultaneous maximum likelihood estimation of linkage and linkage phases in outcrossing populations. Theor Pop Biol 2002, 61:349-363.
12. Wu RL, Ma CM, Wu SS, Zeng ZB: Linkage mapping of sex-specific differences. Genet Res 2002, 79:85-96.
13. Grattapaglia D, R Sederoff: Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 1994, 137:1121-1137.
14. Ling S: Constructing genetic maps for outbred experimental crosses. Ph.D. thesis, University of California, Berkeley, CA 1999.
15. Butcher PA, Williams ER, Whitaker D, Ling S, Speed TP, Moran CF: Improving linkage analysis in outcrossed forest trees - an example from. Acacia mangium. Theor Appl Genet 2002, 104:1185-1191.
16. Dempster AP, Laird NM, Rubin DB: Maximum likelihood from incomplete data via EM algorithm. J Roy Stat Soc Ser B 1977, 39:1-38.
17. Haldane JBS: The combination of linkage values and the calculation of distance between the loci of linked factors. J Genet 1919, 8:299-309.
18. Ridout MS, Tong S, Vowden CJ, Tobutt KR: Three-point linkage analysis in crosses of allogamous plant species. Genet Res 1998, 72:111-121.
19. van Laarhoven PJM, Aarts EHL: Simulated Annealing: Theory and Application D. Reide Publishing Co., Dordrecht, The Netherlands; 1987.
20. Casella G: Empirical Bayes Gibbs sampling. Biostatistics 2001, 2:485-500.