OneMap: Software for genetic mapping in outcrossing species

Hereditas

Volumn 144, Issue 3, 2007, Pages 78-79

  Margarido, G R A ^a   Souza, A P ^b   Garcia, A A F ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITY OF CAMPINAS   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; GENE CONSTRUCT; GENE MAPPING; GENETIC LINKAGE; INTERNET; LINKAGE ANALYSIS; MARKER ASSISTED BREEDING; MAXIMUM LIKELIHOOD METHOD; METHODOLOGY; NONHUMAN; OUTBREEDING; OUTCROSSING; PLANT BREEDING; SPECIES; SPECIES DISTRIBUTION; SUGARCANE;

CHROMOSOME MAPPING; CROSSES, GENETIC; GENETIC MARKERS; GENOME, PLANT; LINKAGE (GENETICS); SOFTWARE; SPECIES SPECIFICITY;

EID: 34547190185     PISSN: 00180661     EISSN: 16015223     Source Type: Journal    
DOI: 10.1111/j.2007.0018-0661.02000.x     Document Type: Article

References (12)

1. Buetow K. H. and Chakravarti A., (1987). Multipoint gene mapping using seriation. I. General methods. Am. J. Human Genet. 41: 180-188.
2. Dempster A. P., Laird N. M. and Rubin D. B., (1977). Maximum likelihood from incomplete data via the EM algorithm. J. R. Statist. Soc. B 39: 1-38.
3. Doerge, R. W. 1996. Constructing genetic maps by rapid chain delineation. -J. Quantitative Trait Loci 2, article 6.
4. Doerge R. W., (2002). Mapping and analysis of quantitative trait loci in experimental populations. Nat. Rev. Genet. 3: 43-52.
5. Garcia A. A. F., Kido E. A., Meza A. N. et al., (2006). Development of an integrated genetic map of a sugarcane (Saccharum spp.) commercial cross, based on a maximum-likelihood approach for estimation of linkage and linkage phases. Theor. Appl. Genet. 112: 298-314.
6. GNU General Public License. 1991. -Free Software Foundation, Inc., Boston, MA.
7. Grattapaglia D. and Sederoff R., (1994). Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross mapping strategy and RAPD markers. Genetics 37: 1121-1137.
8. Ihaka R. and Gentleman R., (1996). R: A language for data analysis and graphics. J. Comput. Graph. Statist. 5: 299-314.
9. Lander E. S., Green P., Abrahanson J. et al., (1987). MAPMAKER: An interactive computing package for constructing primary genetic linkages of experimental and natural populations. Genomics 1: 174-181.
10. Ridout M. S., Tong S., Vowden C. J. et al., (1998). Three-point linkage analysis in crosses of allogamous plant species. Genet. Res. 72: 111-121.
11. Stam P., (1993). Construction of integrated genetic linkage maps by mean of a new computer package: JoinMap. Plant J. 3: 739-774.
12. Wu R., Ma C. X., Painter I. et al., (2002). Simultaneous maximum likelihood estimation of linkage and linkage phases in outcrossing species. Theor. Popul. Biol. 61: 349-363.