-
1
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
-
Tuerk C, Gold L (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
2
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington AD, Szostak JW (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
3
-
-
35148840942
-
Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy
-
DOI 10.1021/cr0306743
-
Famulok M, Hartig JS, Mayer G (2007) Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy. Chem Rev 107: 3715-3743. (Pubitemid 47534316)
-
(2007)
Chemical Reviews
, vol.107
, Issue.9
, pp. 3715-3743
-
-
Famulok, M.1
Hartig, J.S.2
Mayer, G.3
-
4
-
-
0032860385
-
Aptamers: An emerging class of molecules that rival antibodies in diagnostics
-
Jayasena SD (1999) Aptamers: An emerging class of molecules that rival antibodies in diagnostics. Clin Chem 45: 1628-1650.
-
(1999)
Clin Chem
, vol.45
, pp. 1628-1650
-
-
Jayasena, S.D.1
-
6
-
-
33645095226
-
Pegaptanib, a targeted anti-VEGF aptamer for ocular vascular disease
-
Ng EW, Shima DT, Calias P, Cunningham ET Jr, Guyer DR, et al. (2006) Pegaptanib, a targeted anti-VEGF aptamer for ocular vascular disease. Nat Rev Drug Discov 2: 123-132.
-
(2006)
Nat Rev Drug Discov
, vol.2
, pp. 123-132
-
-
Ng, E.W.1
Shima, D.T.2
Calias, P.3
Cunningham Jr., E.T.4
Guyer, D.R.5
-
7
-
-
0032493654
-
165): Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain
-
DOI 10.1074/jbc.273.32.20556
-
Ruckman J, Green SL, Beeson J, Waugh S, Gillette WL, et al. (1998) 2′-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain. J Biol Chem 273: 20556-20567. (Pubitemid 28377626)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.32
, pp. 20556-20567
-
-
Ruckman, J.1
Green, L.S.2
Beeson, J.3
Waugh, S.4
Gillette, W.L.5
Henninger, D.D.6
Claesson-Welsh, L.7
Janjic, N.8
-
8
-
-
0032909507
-
Synthesis of 3′-C- and 4′-C-branched oligonucleotides and the development of locked nucleic acid (LNA)
-
Wengel J (1999) Synthesis of 3′-C- and 4′-C-branched oligonucleotides and the development of locked nucleic acid (LNA). Acc Chem Res 32: 301-310.
-
(1999)
Acc Chem Res
, vol.32
, pp. 301-310
-
-
Wengel, J.1
-
9
-
-
0037310844
-
LNA: A versatile tool for therapeutics and genomics
-
DOI 10.1016/S0167-7799(02)00038-0
-
Petersen M, Wengel J (2003) LNA: A versatile tool for therapeutics and genomics. Trends Biotechnol 21: 74-81. (Pubitemid 36165007)
-
(2003)
Trends in Biotechnology
, vol.21
, Issue.2
, pp. 74-81
-
-
Petersen, M.1
Wengel, J.2
-
10
-
-
67650486013
-
Locked nucleic acid as a novel class of therapeutic agents
-
Veedu RN, Wengel J (2009) Locked nucleic acid as a novel class of therapeutic agents. RNA Biol 6: 321-323.
-
(2009)
RNA Biol
, vol.6
, pp. 321-323
-
-
Veedu, R.N.1
Wengel, J.2
-
11
-
-
77949676231
-
Locked nucleic acids: Promising nucleic acid analogs for therapeutic applications
-
Veedu RN, Wengel J (2010) Locked nucleic acids: promising nucleic acid analogs for therapeutic applications. Chem Biodivers 7: 536-542.
-
(2010)
Chem Biodivers
, vol.7
, pp. 536-542
-
-
Veedu, R.N.1
Wengel, J.2
-
12
-
-
0032473890
-
LNA (Locked Nucleic Acids): Synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition
-
DOI 10.1016/S0040-4020(98)00094-5, PII S0040402098000945
-
Koshkin AA, Singh SK, Nielsen P, Rajwanshi VK, Kumar R, et al. (1998) LNA (Locked Nucleic Acids): Synthesis of Adenin, Cytosine, Guanine, 5-Methylcytosine, Thymine and Uracil Bicyclonucleoside Monomers, Oligomerisation, and Unprecedented Nucleic Acid Recognition. Tetrahedron 54: 3607-3630. (Pubitemid 28108183)
-
(1998)
Tetrahedron
, vol.54
, Issue.14
, pp. 3607-3630
-
-
Koshkin, A.A.1
Singh, S.K.2
Nielsen, P.3
Rajwanshi, V.K.4
Kumar, R.5
Meldgaard, M.6
Olsen, C.E.7
Wengel, J.8
-
13
-
-
0032560835
-
Stability and structural features of the duplexes containing nucleoside analogues with a fixed N-type conformation, 2'-O,4'-C- methyleneribonucleosides
-
DOI 10.1016/S0040-4039(98)01084-3, PII S0040403998010843
-
Obika S, Nanbu D, Hari Y, Andoh J, Morio K, et al. (1998) Stability and structural features of the duplexes containing nucleoside analogues with a fixed N-type conformation, 2′-O, 4′-C-methyleneribonucleosides. Tetrahedron Lett 39: 5401-5404. (Pubitemid 28295121)
-
(1998)
Tetrahedron Letters
, vol.39
, Issue.30
, pp. 5401-5404
-
-
Obika, S.1
Nanbu, D.2
Hari, Y.3
Andoh, J.-I.4
Morio, K.-I.5
Doi, T.6
Imanishi, T.7
-
14
-
-
0343065617
-
LNA (locked nucleic acids): Synthesis and high-affinity nucleic acid recognition
-
Singh SK, Koshkin J, Wengel J, Nielsen P (1998) LNA (locked nucleic acids): synthesis and high-affinity nucleic acid recognition. Chem Commun 455-456. (Pubitemid 128675297)
-
(1998)
Chemical Communications
, Issue.4
, pp. 455-456
-
-
Singh, S.K.1
Nielsen, P.2
Koshkin, A.A.3
Wengel, J.4
-
15
-
-
34447623217
-
Enzymatic incorporation of LNA nucleotides into DNA strands
-
DOI 10.1002/cbic.200600501
-
Veedu RN, Vester B, Wengel J (2007) Enzymatic incorporation of LNA nucleotides into DNA strands. ChemBioChem 8: 490-492. (Pubitemid 47183643)
-
(2007)
ChemBioChem
, vol.8
, Issue.5
, pp. 490-492
-
-
Veedu, R.N.1
Vester, B.2
Wengel, J.3
-
16
-
-
46049121018
-
Polymerase chain reaction and transcription using locked nucleic acid nucleotide triphosphates
-
DOI 10.1021/ja801389n
-
Veedu RN, Vester B, Wengel J (2008) Polymerase chain reaction and transcription using locked nucleic acid nucleotide triphosphates. J Am Chem Soc 130: 8124-8125. (Pubitemid 351898512)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.26
, pp. 8124-8125
-
-
Veedu, R.N.1
Vester, B.2
Wengel, J.3
-
17
-
-
67649329663
-
Efficient enzymatic synthesis of LNA-modified DNA duplexes using KOD DNA polymerase
-
Veedu RN, Vester B, Wengel J (2009) Efficient enzymatic synthesis of LNA-modified DNA duplexes using KOD DNA polymerase. Org Biomol Chem 7: 1404-1409.
-
(2009)
Org Biomol Chem
, vol.7
, pp. 1404-1409
-
-
Veedu, R.N.1
Vester, B.2
Wengel, J.3
-
18
-
-
77958036875
-
Polymerase-directed synthesis of C5-ethynyl locked nucleic acids
-
Veedu RN, Burri HV, Kumar P, Sharma PK, Hrdlicka PJ, et al. (2010) Polymerase-directed synthesis of C5-ethynyl locked nucleic acids. Bioorg Med Chem Lett. 20, 6565-6568.
-
(2010)
Bioorg Med Chem Lett
, vol.20
, pp. 6565-6568
-
-
Veedu, R.N.1
Burri, H.V.2
Kumar, P.3
Sharma, P.K.4
Hrdlicka, P.J.5
-
19
-
-
70349342914
-
Locked nucleic acid nucleoside triphosphates and polymerases: On the way towards evolution of LNA aptamers
-
Veedu RN, Wengel J (2009) Locked nucleic acid nucleoside triphosphates and polymerases: On the way towards evolution of LNA aptamers. Mol Biosyst 5: 787-792.
-
(2009)
Mol Biosyst
, vol.5
, pp. 787-792
-
-
Veedu, R.N.1
Wengel, J.2
-
20
-
-
36849021637
-
In vitro incorporation of LNA nucleotides
-
DOI 10.1080/15257770701527844, PII 787863767
-
Veedu RN, Vester B, Wengel J (2007) In vitro incorporation of LNA nucleotides. Nucleosides Nucleotides Nucleic Acids 26: 1207-1210. (Pubitemid 350223320)
-
(2007)
Nucleosides, Nucleotides and Nucleic Acids
, vol.26
, Issue.8-9
, pp. 1207-1210
-
-
Veedu, R.N.1
Vester, B.2
Wengel, J.3
-
21
-
-
77952573711
-
Polymerase directed incorporation studies of LNA-G nucleoside 5 ′-triphosphate and primer extension involving all four LNA nucleotides
-
Veedu RN, Vester B, Wengel J (2010) Polymerase directed incorporation studies of LNA-G nucleoside 5 ′-triphosphate and primer extension involving all four LNA nucleotides. New J Chem 34: 877-879.
-
(2010)
New J Chem
, vol.34
, pp. 877-879
-
-
Veedu, R.N.1
Vester, B.2
Wengel, J.3
-
22
-
-
48349115007
-
Systematic analysis of enzymatic DNA polymerization using oligo-DNA templates and triphosphate analogs involving 2′,4′-bridged nucleosides
-
Kuwahara M, Obika S, Nagashima J, Ohta Y, Suto Y, et al. (2008) Systematic analysis of enzymatic DNA polymerization using oligo-DNA templates and triphosphate analogs involving 2′,4′-bridged nucleosides. Nucleic Acids Res 36: 4257-4265.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4257-4265
-
-
Kuwahara, M.1
Obika, S.2
Nagashima, J.3
Ohta, Y.4
Suto, Y.5
-
23
-
-
38049176674
-
Chemical Synthesis of LNA-mCTP and its application for MicroRNA detection
-
Kore AR, Hodeib M, Hu Z (2008) Chemical Synthesis of LNA-mCTP and its application for MicroRNA detection. Nucleosides Nucleotides Nucleic Acids 27: 1-17.
-
(2008)
Nucleosides Nucleotides Nucleic Acids
, vol.27
, pp. 1-17
-
-
Kore, A.R.1
Hodeib, M.2
Hu, Z.3
-
24
-
-
0027217643
-
Compilation, alignment, and phylogenetic-relationships of DNA-polymerases
-
Braithwaite DK, Ito J (1993) Compilation, alignment, and phylogenetic-relationships of DNA-polymerases. Nucleic Acids Res 21: 787-802.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 787-802
-
-
Braithwaite, D.K.1
Ito, J.2
-
25
-
-
0036107982
-
Evolution of DNA polymerase families: Evidences for multiple gene exchange between cellular and viral proteins
-
DOI 10.1007/s00239-001-0078-x
-
Filee J, Forterre P, Sen-Lin T, Laurent J (2002) Evolution of DNA polymerase families: Evidences for multiple gene exchange between cellular and viral proteins. J Mol Evol 54: 763-773. (Pubitemid 34553642)
-
(2002)
Journal of Molecular Evolution
, vol.54
, Issue.6
, pp. 763-773
-
-
Filee, J.1
Forterre, P.2
Sen-Lin, T.3
Laurent, J.4
-
26
-
-
0027411261
-
DNA- and RNA-dependent DNA polymerases
-
Steitz TA (1993) DNA- and RNA-dependent DNA polymerases. Curr. Opin. Struct. Biol 3: 31-38.
-
(1993)
Curr. Opin. Struct. Biol
, vol.3
, pp. 31-38
-
-
Steitz, T.A.1
-
27
-
-
0033581011
-
DNA polymerases: Structural diversity and common mechanisms
-
Steitz TA (1999) DNA polymerases: Structural diversity and common mechanisms. J Biol Chem 274: 17395-17398.
-
(1999)
J Biol Chem
, vol.274
, pp. 17395-17398
-
-
Steitz, T.A.1
-
28
-
-
84861970822
-
Enzymatic synthesis of DNA strands containing alpha-L-LNA (alpha-L-configured locked nucleic acid) thymine nucleotides
-
Hojland T, Veedu RN, Vester B, Wengel J (2012) Enzymatic synthesis of DNA strands containing alpha-L-LNA (alpha-L-configured locked nucleic acid) thymine nucleotides. Artif DNA PNA XNA 3: 14-21.
-
(2012)
Artif DNA PNA XNA
, vol.3
, pp. 14-21
-
-
Hojland, T.1
Veedu, R.N.2
Vester, B.3
Wengel, J.4
-
29
-
-
1642523632
-
Comparative Kinetics of Nucleotide Analog Incorporation by Vent DNA Polymerase
-
DOI 10.1074/jbc.M308286200
-
Gardner AF, Joyce CM, Jack WE (2004) Comparative kinetics of nucleotide analog incorporation by vent DNA polymerase. J Biol Chem 279: 11834-11842. (Pubitemid 38401688)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.12
, pp. 11834-11842
-
-
Gardner, A.F.1
Joyce, C.M.2
Jack, W.E.3
-
30
-
-
84891699912
-
-
PerkinElmer Informatics, 940 Winter Street, Waltham, Massachusetts 02451 USA
-
ChemBioDraw, PerkinElmer Informatics, 940 Winter Street, Waltham, Massachusetts 02451 USA.
-
ChemBioDraw
-
-
-
31
-
-
84904505884
-
-
Schrödinger Suite Portland, USA. Available
-
Schrödinger Suite (2013) Schrödinger LLC., Portland, USA. Available: http://www.schrodinger.com.
-
(2013)
-
-
-
32
-
-
37749011993
-
Epik: A software program for pK(a) prediction and protonation state generation for drug-like molecules
-
Shelley JC, Cholleti A, Frye LL, Greenwood JR, Timlin MR, et al. (2007) Epik: a software program for pK(a) prediction and protonation state generation for drug-like molecules. J Comput Aided Mol Des 21: 681-691.
-
(2007)
J Comput Aided Mol des
, vol.21
, pp. 681-691
-
-
Shelley, J.C.1
Cholleti, A.2
Frye, L.L.3
Greenwood, J.R.4
Timlin, M.R.5
-
33
-
-
0035369086
-
Structure of the replicating complex of a pol alpha family DNA polymerase
-
MC
-
MC, Wang J, Steitz TA (2001) Structure of the replicating complex of a pol alpha family DNA polymerase. Cell 105: 657-667.
-
(2001)
Cell
, vol.105
, pp. 657-667
-
-
Wang, J.1
Steitz, T.A.2
-
34
-
-
84880529288
-
Protein and ligand preparation: Parameters, protocols, and influence on virtual screening enrichments
-
Madhavi Sastry G, Adzhigirey M, Day T, Annabhimoju R, Sherman W (2013) Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments. J Comput Aided Mol Des 27: 221-234
-
(2013)
J Comput Aided Mol Des
, vol.27
, pp. 221-234
-
-
Madhavi Sastry, G.1
Adzhigirey, M.2
Day, T.3
Annabhimoju, R.4
Sherman, W.5
-
36
-
-
84879113693
-
Structures of KOD and 9°N DNA Polymerases Complexed with Primer Template Duplex
-
Bergen K, Betz K, Welte W, Diederichs K, Marx A (2013) Structures of KOD and 9°N DNA Polymerases Complexed with Primer Template Duplex. ChemBioChem 14: 1058-1062.
-
(2013)
ChemBioChem
, vol.14
, pp. 1058-1062
-
-
Bergen, K.1
Betz, K.2
Welte, W.3
Diederichs, K.4
Marx, A.5
-
37
-
-
12144289984
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
-
DOI 10.1021/jm0306430
-
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, et al. (2004) Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. J Med Chem 47: 1739-1749. (Pubitemid 38380917)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.7
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
38
-
-
0032573488
-
Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: Implications for drug resistance
-
Huang H, Chopra R, Verdine GL, Harrison SC(1998) Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance. Science 282: 1669-1675. (Pubitemid 28549275)
-
(1998)
Science
, vol.282
, Issue.5394
, pp. 1669-1675
-
-
Huang, H.1
Chopra, R.2
Verdine, G.L.3
Harrison, S.C.4
-
39
-
-
0032518398
-
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
-
Doublie' S, Tabor S, Long AM, Richardson CC, Ellenberger T (1998) Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution. Nature 391: 251-258.
-
(1998)
Nature
, vol.391
, pp. 251-258
-
-
Doublie, S.1
Tabor, S.2
Long, A.M.3
Richardson, C.C.4
Ellenberger, T.5
-
40
-
-
0032535528
-
Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation
-
DOI 10.1093/emboj/17.24.7514
-
Li Y, Korolev S, Waksman G (1998) Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural for nucleotide incorporation. EMBO J 17: 7514-7525. (Pubitemid 29002718)
-
(1998)
EMBO Journal
, vol.17
, Issue.24
, pp. 7514-7525
-
-
Li, Y.1
Korolev, S.2
Waksman, G.3
-
41
-
-
0033133780
-
Touching the heart of HIV-1 drug resistance: The fingers close down on the dNTP at the polymerase active site
-
DOI 10.1016/S1074-5521(99)80071-4
-
Sarafianos SG, Das K, Ding J, Boyer PL, Hughes SH, et al. (1999) Touching the heart of HIV-1 drug resistance: the finger close down on the dNTP at the polymerase active site. Chem Biol 6: R137-R146. (Pubitemid 29363176)
-
(1999)
Chemistry and Biology
, vol.6
, Issue.5
-
-
Sarafianos, S.G.1
Kalyan, D.2
Ding, J.3
Boyer, P.L.4
Hughes, S.H.5
Arnold, E.6
-
42
-
-
0037566670
-
Structural insights into the origins of DNA polymerase fidelity
-
DOI 10.1016/S0969-2126(03)00051-0
-
Beard WA, Wilson SH, (2003) Structural insights into the origins of DNA polymerase fidelity. Structure 11: 489-496. (Pubitemid 36579127)
-
(2003)
Structure
, vol.11
, Issue.5
, pp. 489-496
-
-
Beard, W.A.1
Wilson, S.H.2
-
43
-
-
0032005866
-
Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes
-
DOI 10.1016/S0959-440X(98)80010-9
-
Brautigam CA, Steitz TA (1998) Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes. Curr Opin Struct Biol 8: 54-63. (Pubitemid 28107916)
-
(1998)
Current Opinion in Structural Biology
, vol.8
, Issue.1
, pp. 54-63
-
-
Brautigam, C.A.1
Steitz, T.A.2
-
44
-
-
0028206048
-
Function and structure relationships in DNA polymerases
-
Joyce CM, Steitz TA (1994) Function and structure relationships in DNA polymerases. Annu Rev Biochem 63: 777-822. (Pubitemid 24218649)
-
(1994)
Annual Review of Biochemistry
, vol.63
, pp. 777-822
-
-
Joyce, C.M.1
Steitz, T.A.2
|