Molecular motors pulling cargos in the viscoelastic cytosol: How power strokes beat subdiffusion

Physical Chemistry Chemical Physics

Volumn 16, Issue 31, 2014, Pages 16524-16535

  Goychuk, Igor ^a   Kharchenko, Vasyl O ^b   Metzler, Ralf ^a,c  

^a UNIVERSITY OF POTSDAM   (Germany)

^b INSTITUTE OF APPLIED PHYSICS   (Ukraine)

^c TAMPERE UNIVERSITY OF TECHNOLOGY   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

MOLECULAR MOTOR;

CHEMISTRY; CYTOSOL; ELASTICITY; PHYSIOLOGY; THERMODYNAMICS; VISCOSITY;

CYTOSOL; ELASTICITY; MOLECULAR MOTOR PROTEINS; THERMODYNAMICS; VISCOSITY;

EID: 84904439059     PISSN: 14639076     EISSN: None     Source Type: Journal    
DOI: 10.1039/c4cp01234h     Document Type: Article

References (76)

1. R. Kubo Rep. Prog. Phys., 1966, 29, 255.
2. P. Nelson, Biological Physics: Energy, Information, Life, Freeman and Co., New York, 2004
3. K. Luby-Phelps Mol. Biol. Cell, 2013, 24, 2593.
4. T. Odijk Biophys. J., 2000, 79, 2314.
5. L. Masaro, X. X. Zhu Prog. Polym. Sci., 1999, 24, 731.
6. R. Holyst, et al. Phys. Chem. Chem. Phys., 2009, 11, 9025.
7. I. Goychuk Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2012, 86, 021113.
8. G. Guigas, C. Kalla, M. Weiss Biophys. J., 2007, 93, 316.
9. F. Amblard, et al. Phys. Rev. Lett., 1996, 77, 4470.
10. M. J. Saxton, K. Jacobson Annu. Rev. Biophys. Biomol. Struct., 1997, 26, 373.
11. H. Qian Biophys. J., 2000, 79, 137.
12. S. Yamada, D. Wirtz, S. C. Kuo Biophys. J., 2000, 78, 1736.
13. A. Caspi, R. Granek, M. Elbaum Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2002, 66, 011916.
14. I. M. Tolić-Nørrelykke, E.-L. Munteanu, G. Thon, L. Oddershede, K. Berg-Sørensen Phys. Rev. Lett., 2004, 93, 078102.
15. I. Golding, E. C. Cox Phys. Rev. Lett., 2006, 96, 098102.
16. J. Szymanski, M. Weiss Phys. Rev. Lett., 2009, 103, 038102.
17. D. Robert, Th.-H. Nguyen, F. Gallet, C. Wilhelm PLoS One, 2010, 4, e10046.
18. L. Bruno, M. Salierno, D. E. Wetzler, M. A. Desposito, V. Levi PLoS One, 2011, 6, e18332.
19. J. H. Jeon, V. Tejedor, S. Burov, E. Barkai, C. Selhuber-Unkel, K. Berg-Sørensen, L. Oddershede, R. Metzler Phys. Rev. Lett., 2011, 106, 048103.
20. J. H. Jeon, M. Leijnse, L. B. Oddershede, R. Metzler New J. Phys., 2013, 15, 045011.
21. E. Barkai, Y. Garini, R. Metzler Phys. Today, 2012, 65, 8, 29.
22. S. M. A. Tabei, S. Burov, H. Y. Kim, A. Kuznetsov, T. Huynh, J. Jureller, L. H. Philipson, A. R. Dinner, N. F. Scherer Proc. Natl. Acad. Sci. U. S. A., 2013, 110, 4911.
23. F. Höfling, T. Franosch Rep. Prog. Phys., 2013, 76, 046602.
24. M. A. Taylor, J. Janousek, V. Daria, J. Knittel, B. Hage, H.-A. Bachor, W. P. Bowen Nat. Photonics, 2013, 7, 229.
25. S. C. Weber, A. J. Spakowitz, J. A. Theriot Phys. Rev. Lett., 2010, 104, 238102.
26. M. Weiss Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2013, 88, 010101(R).
27. M. Magdziarz, A. Weron, K. Burnecki, J. Klafter Phys. Rev. Lett., 2013, 103, 180602.
28. A. N. Kolmogorov Dokl. Akad. Nauk SSSR, 1940, 26, 115. (in Russian), English transl.
29. in Selected Works of A. N. Kolmogorov, vol. I, Mechanics and Mathematics, ed. V. M. Tikhomirov, Kluwer, Dordrecht, 1991, pp. 303-307
30. B. B. Mandelbrot, J. W. van Ness SIAM Rev., 1968, 10, 422.
31. I. Goychuk Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2009, 80, 046125.
32. K. G. Wang, M. Tokuyama Physica A, 1999, 265, 341.
33. I. Goychuk, P. Hänggi Phys. Rev. Lett., 2007, 99, 200601.
34. R. Zwanzig J. Stat. Phys., 1973, 9, 215.
35. I. Goychuk Adv. Chem. Phys., 2012, 150, 187.
36. R. Zwanzig, Nonequilibrium statistical mechanics, Oxford University Press, Oxford, 2001
37. R. Kubo, M. Toda, and M. Hashitsume, Nonequilibrium statistical mechanics, Springer, Berlin, 2nd edn, 1991
38. R. J. Ellis, A. P. Minton Nature, 2003, 425, 27.
39. S. R. McGuffee, A. H. Elcock PLoS Comput. Biol., 2010, 6, e1000694.
40. N. Hirokawa, R. Takemura Nat. Rev. Neurosci., 2005, 6, 201.
41. A. T. Jones, M. Gumbleton, R. Duncan Adv. Drug Delivery Rev., 2003, 55, 1353.
42. J.-F. Chauwin, A. Ajdari, J. Prost Europhys. Lett., 1994, 27, 421.
43. F. Jülicher, A. Ajdari, J. Prost Rev. Mod. Phys., 1997, 69, 1269.
44. F. Jülicher, in Transport and Structure: Their Competitive Roles in Biophysics and Chemistry, Lect. Not. Phys., ed. S. C. Müller, J. Parisi and W. Zimmermann, Springer, Berlin, 1999, vol. 532, p. 46
45. R. D. Astumian Science, 1997, 276, 917.
46. R. D. Astumian, M. Bier Biophys. J., 1996, 70, 637.
47. M. E. Fisher, A. B. Kolomeisky Proc. Natl. Acad. Sci. U. S. A., 2001, 98, 7748.
48. R. Perez-Carrasco, J. M. Sancho Biophys. J., 2010, 98, 2591.
49. P. Reimann Phys. Rep., 2002, 361, 57.
50. I. Goychuk Chem. Phys., 2010, 375, 450.
51. I. Goychuk, V. Kharchenko Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2012, 85, 051131.
52. V. Kharchenko, I. Goychuk New J. Phys., 2012, 14, 043042.
53. I. Goychuk, V. Kharchenko Math. Modell. Nat. Phenom., 2013, 8, 144.
54. V. Kharchenko, I. Goychuk Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2013, 87, 052119.
55. Yu. A. Makhnovskii, V. M. Rozenbaum, D.-Y. Yang, S. H. Lin, T. Y. Tsong Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2004, 69, 021102.
56. I. Goychuk, V. Kharchenko, R. Metzler PLoS One, 2014, 9, e91700.
57. K. B. Zeldovich, J.-F. Joanny, J. Prost Eur. Phys. J. E: Soft Matter Biol. Phys., 2005, 17, 155.
58. H. Kojima, E. Muto, H. Higuchi, T. Yanagida Biophys. J., 1996, 73, 2012.
59. T. G. Mason, D. A. Weitz Phys. Rev. Lett., 1995, 74, 1250.
60. T. A. Waigh Rep. Prog. Phys., 2005, 68, 685.
61. R. A. L. Jones, Soft Condensed Matter, Oxford University Press, Oxford, 2009
62. A. Gemant Physics, 1936, 7, 311.
63. J. C. Maxwell Philos. Trans. R. Soc. London, 1867, 157, 49.
64. U. Weiss, Quantum Dissipative Systems, World Scientific, Singapore, 2nd edn, 1999
65. L. Bruno, V. Levi, M. Brunstein, M. A. Desposito Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2009, 80, 011912.
66. A. W. Harrison, D. A. Kenwright, T. A. Waigh, P. G. Woodman, V. J. Allan Phys. Biol., 2013, 10, 036002.
67. R. G. Palmer, D. L. Stein, E. Abrahams, P. W. Anderson Phys. Rev. Lett., 1984, 53, 958.
68. K. Sekimoto J. Phys. Soc. Jpn., 1997, 66, 1234.
69. I. Derenyi, M. Bier, R. D. Astumian Phys. Rev. Lett., 1999, 83, 903.
70. D. Suzuki, T. Munakata Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2003, 68, 021906.
71. H. Wang, G. Oster Europhys. Lett., 2002, 57, 134.
72. J. Wyman Proc. Natl. Acad. Sci. U. S. A., 1975, 72, 3983.
73. T. C. Gard, Introduction to Stochastic Differential Equations, Dekker, New York, 1988
74. W. Deng, E. Barkai Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2009, 79, 011112.
75. J.-H. Jeon, R. Metzler Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2012, 85, 021147.
76. B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter, Molecular Biology of the Cell, Garland Science, New York, 4th edn, 2002