Proteomics insights into the basis of interspecific facilitation for maize (Zea mays) in faba bean (Vicia faba)/maize intercropping

Journal of Proteomics

Volumn 109, Issue , 2014, Pages 111-124

  Yan, Shuo ^a,b   Du, Xiaoqiu ^a,e   Wu, Feng ^a   Li, Long ^c   Li, Chengyun ^d   Meng, Zheng ^a  

^a INSTITUTE OF BOTANY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c CHINA AGRICULTURAL UNIVERSITY   (China)

^d YUNNAN AGRICULTURAL UNIVERSITY   (China)

^e Nanchong Institute of Agricultural Sciences   (China)

Author keywords

Faba bean maize intercropping; Interspecific facilitation; Nitrogen; Phosphorus; Rhizosphere effects; Stress tolerance

Indexed keywords

GLUTAMATE AMMONIA LIGASE; GLUTAMATE DEHYDROGENASE; MITOGEN ACTIVATED PROTEIN KINASE; NITROGEN; PHOSPHORUS; PROTEOME; VEGETABLE PROTEIN;

ARTICLE; BIOMASS; CELL STRUCTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DOWN REGULATION; ENERGY METABOLISM; FINE ROOT; GENE EXPRESSION; INTERCROPPING; INTERSPECIFIC RELATIONSHIP; MAIZE; MOLECULAR INTERACTION; MOLECULAR MECHANICS; NITROGEN FIXATION; NITROGEN UPTAKE; NONHUMAN; NUCLEAR REPROGRAMMING; NUTRIENT UPTAKE; PHENOTYPE; PLANT DEVELOPMENT; PLANT GENETICS; PLANT GROWTH; PLANT METABOLISM; PLANT NUTRIENT; PLANT STRESS; PRIORITY JOURNAL; PROTEIN METABOLISM; PROTEOMICS; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHIZOSPHERE; ROOT LENGTH; SECONDARY METABOLISM; SHOOT; SIGNAL TRANSDUCTION; SOIL CHEMISTRY; SPECIES IDENTIFICATION; SYSTEMIC ACQUIRED RESISTANCE; VICIA FABA; COMPARATIVE STUDY; ISOELECTRIC FOCUSING; OXIDATIVE PHOSPHORYLATION; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; ROOT DEVELOPMENT; STRESS; TWO DIMENSIONAL ELECTROPHORESIS; METABOLISM; RHIZOME;

VICIA FABA; ZEA MAYS;

NITROGEN; PHOSPHORUS; PLANT PROTEINS; PROTEOMICS; RHIZOME; VICIA FABA; ZEA MAYS;

EID: 84904415870     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2014.06.027     Document Type: Article

References (63)

1. Liu X.H. The farming systems 1994, China Agricultural University Press, Beijing.
2. Vandermeer J. The ecology of intercropping 1989, Cambridge University Press, Cambridge.
3. Li L., Yang S.C., Li X.L., Zhang F.S., Christie P. Interspecific complementary and competitive interactions between intercropped maize and faba bean. Plant Soil 1999, 212:105-114.
4. Li L., Sun J.H., Zhang F.S., Guo T.W., Bao X.G., Smith F.A., et al. Root distribution and interactions between intercropped species. Oecologia 2006, 147:280-290.
5. Dhima K.V., Lithourgidis A.S., Vasilakoglou I.B., Dordas C.A. Competition indices of common vetch and cereal intercrops in two seeding ratio. Field Crop Res 2007, 100:249-256.
6. Li L., Zhang F.S., Li X.L., Christie P., Sun J.H., Yang S.C., et al. Interspecific facilitation of nutrient uptake by intercropped maize and faba bean. Nutr Cycl Agroecosyst 2003, 65:61-71.
7. Li L., Li S.M., Sun J.H., Zhou L.L., Bao X.G., Zhang H.G., et al. Diversity enhances agricultural productivity via rhizosphere phosphorus facilitation on phosphorus-deficient soils. Proc Natl Acad Sci U S A 2007, 104:11192-11196.
8. Javanmard A., Nasab A.D.M., Javanshir A., Moghaddam M., Janmohammadi H. Forage yield and quality in intercropping of maize with different legumes as double-cropped. J Food Agric Environ 2009, 7:163-166.
9. Li H.G., Shen J.B., Zhang F.S., Marschner P., Cawthray G., Rengel Z. Phosphorus uptake and rhizosphere properties of intercropped and monocropped maize, faba bean, and white lupin in acidic soil. Biol Fertil Soils 2010, 46:79-91.
10. Banik P., Midya A., Sarkar B.K., Ghose S.S. Wheat and chickpea intercropping systems in an additive series experiment: advantages and weed smothering. Eur J Agron 2006, 24:325-332.
11. Vasilakoglou I., Dhima K., Lithourgidis A., Eleftherohorinos I. Competitive ability of winter cereal-common vetch intercrops against sterile oat. Exp Agric 2008, 44:509-520.
12. Zhang F., Shen J., Li L., Liu X. An overview of rhizosphere processes related with plant nutrition in major cropping systems in China. Plant Soil 2004, 260:89-99.
13. Kochian L.V. Plant nutrition: rooting for more phosphorus. Nature 2012, 488:466-467.
14. +-ATPase. Plant Physiol 2004, 136:2475-2482.
15. Gojon A., Nacry P., Davidian J.C. Root uptake regulation: a central process for NPS homeostasis in plants. Curr Opin Plant Biol 2009, 12:328-338.
16. Nagy R., Vasconcelos M.J., Zhao S., McElver J., Bruce W., Amrhein N., et al. Differential regulation of five Pht1 phosphate transporters from maize (Zea mays L.). Plant Biol 2006, 8:186-197.
17. Touchette B.W., Burkholder J.M. Review of nitrogen and phosphorus metabolism in seagrasses. J Exp Mar Biol Ecol 2000, 250:133-167.
18. Song Y.N., Zhang F.S., Marschner P., Fan F.L., Gao H.M., Bao X.G., et al. Effect of intercropping on crop yield and chemical and microbiological properties in rhizosphere of wheat (Triticum aestivum L.), maize (Zea mays L.), and faba bean (Vicia faba L.). Biol Fertil Soils 2007, 43:565-574.
19. Song Y.N., Marschner P., Li L., Bao X.G., Sun J.H., Zhang F.S. Community composition of ammonia-oxidizing bacteria in the rhizosphere of intercropped wheat (Triticum aestivum L.), maize (Zea mays L.), and faba bean (Vicia faba L.). Biol Fertil Soils 2007, 44:307-314.
20. Bais H.P., Weir T.L., Perry L.G., Gilroy S., Vivanco J.M. The role of root exudates in rhizosphere interactions with plants and other organisms. Annu Rev Plant Biol 2006, 57:233-266.
21. von Rad U., Huttl R., Lottspeich F., Gierl A., Frey M. Two glucosyltransferases are involved in detoxification of benzoxazinoids in maize. Plant J 2001, 28:633-642.
22. Kloepper J.W., Ryu C.M., Zhang S.A. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology 2004, 94:1259-1266.
23. Nihorimbere V., Ongena M., Smargiassi M., Thonart P. Beneficial effect of the rhizosphere microbial community for plant growth and health. Biotechnol Agron Soc 2011, 15:327-337.
24. van Loon L.C., Bakker P.A.H.M., Pieterse C.M.J. Systemic resistance induced by rhizosphere bacteria. Annu Rev Phytopathol 1998, 36:453-483.
25. Fiqueiredo M.V.B., Burity H.A., Martinez C.R., Chanway C.P. Alleviation of drought stress in the common bean (Phaseolus vulgaris L.) by co-inoculation with Paenibacillus polymyxa and Rhizobium tropici. Appl Soil Ecol 2008, 40:182-188.
26. Kohler J., Hernandez J.A., Caravaca F., Roldan A. Plant-growth-promoting rhizobacteria and arbuscular mycorrhizal fungi modify alleviation biochemical mechanisms in water-stressed plants. Funct Plant Biol 2008, 35:141-151.
27. Yang J., Kloepper J.W., Ryu C.M. Rhizosphere bacteria help plants tolerate abiotic stress. Trends Plant Sci 2009, 14:1-4.
28. Cravatt B.F., Simon G.M., Yates J.R. The biological impact of mass-spectrometry-based proteomics. Nature 2007, 450:991-1000.
29. Page A.L. Methods of soil analysis. Part 2. Chemical and microbiological properties 1982, American Society of Agronomy, Soil Science Society of America, Madison, USA.
30. Saravanan R.S., Rose J.K. A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 2004, 4:2522-2532.
31. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254.
32. Qin G., Tian S., Chan Z., Li B. Crucial role of antioxidant proteins and hydrolytic enzymes in pathogenicity of Penicillium expansum: analysis based on proteomics approach. Mol Cell Proteomics 2007, 6:425-438.
33. Shenoy V.V., Kalagudi G.M. Enhancing plant phosphorus use efficiency for sustainable cropping. Biotechnol Adv 2005, 23:501-513.
34. Hinsinger P. Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes: a review. Plant Soil 2001, 237:173-195.
35. Tesfaye M., Temple S.J., Allan D.L., Vance C.P., Samac D.A. Overexpression of malate dehydrogenase in transgenic alfalfa enhances organic acid synthesis and confers tolerance to aluminum. Plant Physiol 2001, 127:1836-1844.
36. Thomas C., Sun Y., Naus K., Lloyd A., Roux S. Apyrase functions in plant phosphate nutrition and mobilizes phosphate from extracellular ATP. Plant Physiol 1999, 119:543-552.
37. Wang E., Yu N., Bano A., Liu C.W., Miller A.J., Cousins D., et al. A H+-ATPase that energizes nutrient uptake during mycorrhizal symbioses in rice and Medicago truncatula. Plant Cell 2014, [www.plantcell.org]. 10.1105/tpc.113.120527.
38. Bainard L.D., Klironomos J.N., Gordon A.M. Arbuscular mycorrhizal fungi in tree-based intercropping systems: a review of their abundance and diversity. Pedobiologia 2011, 54:57-61.
39. Miflin B.J., Habash D.Z. The role of glutamine synthetase and glutamate dehydrogenase in nitrogen assimilation and possibilities for improvement in the nitrogen utilization of crops. J Exp Bot 2002, 53:979-987.
40. Hirel B., Bertin P., Quillere I., Bourdoncle W., Attagnant C., Dellay C., et al. Towards a better understanding of the genetic and physiological basis for nitrogen use efficiency in maize. Plant Physiol 2001, 125:1258-1270.
41. Obara M., Sato T., Sasaki S., Kashiba K., Nagano A., Nakamura I., et al. Identification and characterization of a QTL on chromosome 2 for cytosolic glutamine synthetase content and panicle number in rice. Theor Appl Genet 2004, 110:1-11.
42. Tabuchi M., Sugiyama K., Ishiyama K., Inoue E., Sato T., Takahashi H., et al. Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1. Plant J 2005, 42:641-651.
43. Martin A., Lee J., Kichey T., Gerentes D., Zivy M., Tatout C., et al. Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell 2006, 18:3252-3274.
44. Krapp A., Saliba-Colombani V., Daniel-Vedele F. Analysis of C and N metabolisms and of C/N interactions using quantitative genetics. Photosynth Res 2005, 83:251-263.
45. Srivastava H.S., Singh R.P. Role and regulation of l-glutamate dehydrogenase-activity in higher-plants. Phytochemistry 1987, 26:597-610.
46. 31P nuclear magnetic resonance. J Exp Bot 2001, 52:37-45.
47. Fuentes S.I., Allen D.J., Ortiz-Lopez A., Hernandez G. Over-expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations. J Exp Bot 2001, 52:1071-1081.
48. Habash D.Z., Massiah A.J., Rong H.L., Wallsgrove R.M., Leigh R.A. The role of cytosolic glutamine synthetase in wheat. Ann Appl Biol 2001, 138:83-89.
49. Dubois F., Terce-Laforgue T., Gonzalez-Moro M.B., Estavillo J.M., Sangwan R., Gallais A., et al. Glutamate dehydrogenase in plants: is there a new story for an old enzyme?. Plant Physiol Biochem 2003, 41:565-576.
50. Jing Z.P., Gallardo F., Pascual M.B., Sampalo R., Romero J., de Navarra A.T., et al. Improved growth in a field trial of transgenic hybrid poplar overexpressing glutamine synthetase. New Phytol 2004, 164:137-145.
51. Krouk G., Ruffel S., Gutierrez R.A., Gojon A., Crawford N.M., Coruzzi G.M., et al. A framework integrating plant growth with hormones and nutrients. Trends Plant Sci 2011, 16:178-182.
52. Zhang H., Mallik A., Zeng R.S. Control of Panama disease of banana by rotating and intercropping with Chinese chive (Allium Tuberosum Rottler): role of plant volatiles. J Chem Ecol 2013, 39:243-252.
53. Chou C.H. Role of allelopathy in sustainable agriculture: use of allelochemicals as naturally occurring bio-agrochemicals. Allelopathy J 2010, 25:3-16.
54. Patnaik D., Khurana P. Germins and germin like proteins: an overview. Indian J Exp Biol 2001, 39:191-200.
55. Swart S., Logman T.J., Smit G., Lugtenberg B.J., Kijne J.W. Purification and partial characterization of a glycoprotein from pea (Pisum sativum) with receptor activity for rhicadhesin, an attachment protein of Rhizobiaceae. Plant Mol Biol 1994, 24:171-183.
56. Bernier F., Berna A. Germins and germin-like proteins: plant do-all proteins. But what do they do exactly?. Plant Physiol Biochem 2001, 39:545-554.
57. Gucciardo S., Wisniewski J.P., Brewin N.J., Bornemann S. A germin-like protein with superoxide dismutase activity in pea nodules with high protein sequence identity to a putative rhicadhesin receptor. J Exp Bot 2007, 58:1161-1171.
58. Tena G., Asai T., Chiu W.L., Sheen J. Plant mitogen-activated protein kinase signaling cascades. Curr Opin Plant Biol 2001, 4:392-400.
59. Zhang S.Q., Klessig D.F. MAPK cascades in plant defense signaling. Trends Plant Sci 2001, 6:520-527.
60. Zhang T., Liu Y., Yang T., Zhang L., Xu S., Xue L., et al. Diverse signals converge at MAPK cascades in plant. Plant Physiol Biochem 2006, 44:274-283.
61. Rodriguez M.C., Petersen M., Mundy J. Mitogen-activated protein kinase signaling in plants. Annu Rev Plant Biol 2010, 61:621-649.
62. Aitken A. 14-3-3 proteins on the map. Trends Biochem Sci 1995, 20:95-97.
63. Tzivion G., Avruch J. 14-3-3 proteins: active cofactors in cellular regulation by serine/threonine phosphorylation. J Biol Chem 2002, 277:3061-3064.