-
1
-
-
84879317754
-
Specific-gene studies of evolutionary mechanisms in an age of genome-wide surveying
-
Watt WB. 2013. Specific-gene studies of evolutionary mechanisms in an age of genome-wide surveying. Ann. N. Y. Acad. Sci. 1289:1-17. http://dx.doi.org/10.1111/nyas.12139.
-
(2013)
Ann. N. Y. Acad. Sci
, vol.1289
, pp. 1-17
-
-
Watt, W.B.1
-
2
-
-
0018965756
-
Partitioning of plasmid R1 in Escherichia coli. I. Kinetics of loss of plasmid derivatives deleted of the par region
-
Nordström K, Molin S, Aagaard-Hansen H. 1980. Partitioning of plasmid R1 in Escherichia coli. I. Kinetics of loss of plasmid derivatives deleted of the par region. Plasmid 4:215-227.
-
(1980)
Plasmid
, vol.4
, pp. 215-227
-
-
Nordström, K.1
Molin, S.2
Aagaard-Hansen, H.3
-
3
-
-
0023042564
-
Partitioning of plasmid R1,Structural and functional analysis of the parA locus
-
Gerdes K, Molin S. 1986. Partitioning of plasmid R1. Structural and functional analysis of the parA locus. J. Mol. Biol. 190:269-279.
-
(1986)
J. Mol. Biol
, vol.190
, pp. 269-279
-
-
Gerdes, K.1
Molin, S.2
-
4
-
-
77957107804
-
The ParMRC system: molecular mechanisms of plasmid segregation by actin-like filaments
-
Salje J, Gayathri P, Lowe J. 2010. The ParMRC system: molecular mechanisms of plasmid segregation by actin-like filaments. Nat. Rev. Microbiol. 8:683-692. http://dx.doi.org/10.1038/nrmicro2425.
-
(2010)
Nat. Rev. Microbiol
, vol.8
, pp. 683-692
-
-
Salje, J.1
Gayathri, P.2
Lowe, J.3
-
5
-
-
12244298896
-
F-actin-like filaments formed by plasmid segregation protein ParM
-
van Ent F, Moller-Jensen J, Amos LA, Gerdes K, Lowe J. 2002. F-actin-like filaments formed by plasmid segregation protein ParM. EMBO J. 21:6935-6943. http://dx.doi.org/10.1093/emboj/cdf672.
-
(2002)
EMBO J
, vol.21
, pp. 6935-6943
-
-
Van Ent, F.1
Moller-Jensen, J.2
Amos, L.A.3
Gerdes, K.4
Lowe, J.5
-
6
-
-
57649119781
-
Protein-nanocrystal conjugates support a single filament polymerization model in R1 plasmid segregation
-
Choi CL, Claridge SA, Garner EC, Alivisatos AP, Mullins RD. 2008. Protein-nanocrystal conjugates support a single filament polymerization model in R1 plasmid segregation. J. Biol. Chem. 283:28081-28086. http://dx.doi.org/10.1074/jbc.M803833200.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 28081-28086
-
-
Choi, C.L.1
Claridge, S.A.2
Garner, E.C.3
Alivisatos, A.P.4
Mullins, R.D.5
-
7
-
-
49949085338
-
Bacterial actin: architecture of the ParMRC plasmid DNA partitioning complex
-
Salje J, Lowe J. 2008. Bacterial actin: architecture of the ParMRC plasmid DNA partitioning complex. EMBO J. 27:2230-2238. http://dx.doi.org/10.1038/emboj.2008.152.
-
(2008)
EMBO J
, vol.27
, pp. 2230-2238
-
-
Salje, J.1
Lowe, J.2
-
8
-
-
8344247018
-
Dynamic instability in a DNA-segregating prokaryotic actin homolog
-
Garner EC, Campbell CS, Mullins RD. 2004. Dynamic instability in a DNA-segregating prokaryotic actin homolog. Science 306:1021-1025. http://dx.doi.org/10.1126/science.1101313.
-
(2004)
Science
, vol.306
, pp. 1021-1025
-
-
Garner, E.C.1
Campbell, C.S.2
Mullins, R.D.3
-
9
-
-
84870708478
-
A bipolar spindle of antiparallel ParM filaments drives bacterial plasmid segregation
-
Gayathri P, Fujii T, Moller-Jensen J, van Ent F, Namba K, Lowe J. A bipolar spindle of antiparallel ParM filaments drives bacterial plasmid segregation. Science 338:1334-1337. http://dx.doi.org/10.1126/science.1229091.
-
Science
, vol.338
, pp. 1334-1337
-
-
Gayathri, P.1
Fujii, T.2
Moller-Jensen, J.3
van Ent, F.4
Namba, K.5
Lowe, J.6
-
10
-
-
33847675333
-
Reconstitution of DNA segregation driven by assembly of a prokaryotic actin homolog
-
Garner EC, Campbell CS, Weibel DB, Mullins RD. 2007. Reconstitution of DNA segregation driven by assembly of a prokaryotic actin homolog. Science 315:1270-1274. http://dx.doi.org/10.1126/science.1138527.
-
(2007)
Science
, vol.315
, pp. 1270-1274
-
-
Garner, E.C.1
Campbell, C.S.2
Weibel, D.B.3
Mullins, R.D.4
-
11
-
-
0033861269
-
Plasmid and chromosome partitioning: surprises from phylogeny
-
Gerdes K, Moller-Jensen J, Bugge Jensen R. 2000. Plasmid and chromosome partitioning: surprises from phylogeny. Mol. Microbiol. 37:455- 466. http://dx.doi.org/10.1046/j.1365-2958.2000.01975.x.
-
(2000)
Mol. Microbiol
, vol.37
, pp. 455-466
-
-
Gerdes, K.1
Moller-Jensen, J.2
Bugge Jensen, R.3
-
12
-
-
34548354843
-
Plasmid partition and incompatibility- the focus shifts
-
Bouet JY, Nordstrom K, Lane D. 2007. Plasmid partition and incompatibility- the focus shifts. Mol. Microbiol. 65:1405-1414. http://dx.doi.org/10.1111/j.1365-2958.2007.05882.x.
-
(2007)
Mol. Microbiol
, vol.65
, pp. 1405-1414
-
-
Bouet, J.Y.1
Nordstrom, K.2
Lane, D.3
-
13
-
-
0029961050
-
P1 and P7 plasmid partition: ParB protein bound to its partition site makes a separate discriminator contact with the DNA that determines species specificity
-
Radnedge L, Davis MA, Austin SJ. 1996. P1 and P7 plasmid partition: ParB protein bound to its partition site makes a separate discriminator contact with the DNA that determines species specificity. EMBO J. 15: 1155-1162.
-
(1996)
EMBO J
, vol.15
, pp. 1155-1162
-
-
Radnedge, L.1
Davis, M.A.2
Austin, S.J.3
-
14
-
-
18244373682
-
Plasmid partition system of the P1par family from the pWR100 virulence plasmid of Shigella flexneri
-
Sergueev K, Dabrazhynetskaya A, Austin S. 2005. Plasmid partition system of the P1par family from the pWR100 virulence plasmid of Shigella flexneri. J. Bacteriol. 187:3369-3373. http://dx.doi.org/10.1128/JB.187.10.3369-3373.2005.
-
(2005)
J. Bacteriol
, vol.187
, pp. 3369-3373
-
-
Sergueev, K.1
Dabrazhynetskaya, A.2
Austin, S.3
-
15
-
-
0032831061
-
CompleteDNAsequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid
-
Tobe T, Hayashi T, Han CG, Schoolnik GK, Ohtsubo E, Sasakawa C. CompleteDNAsequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid. Infect. Immun. 67:5455-5462.
-
Infect. Immun
, vol.67
, pp. 5455-5462
-
-
Tobe, T.1
Hayashi, T.2
Han, C.G.3
Schoolnik, G.K.4
Ohtsubo, E.5
Sasakawa, C.6
-
16
-
-
33646816351
-
Complete DNA sequence and gene analysis of the virulence plasmid pCP301 of Shigella flexneri 2a
-
Zhang J, Liu H, Zhang X, Yang J, Yang F, Yang G, Shen Y, Hou Y, Jin Q. 2003. Complete DNA sequence and gene analysis of the virulence plasmid pCP301 of Shigella flexneri 2a. Sci. China C. Life. Sci. 46:513-521. http://dx.doi.org/10.1360/02yc0060.
-
(2003)
Sci. China C. Life. Sci
, vol.46
, pp. 513-521
-
-
Zhang, J.1
Liu, H.2
Zhang, X.3
Yang, J.4
Yang, F.5
Yang, G.6
Shen, Y.7
Hou, Y.8
Jin, Q.9
-
17
-
-
84863304598
-
R: a language and environment for statistical computing
-
Development Core Team R. R Foundation for Statistical Computing, Vienna, Austria.
-
Development Core Team R. 2013. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2013)
-
-
-
18
-
-
34248999538
-
Time-course determination of plasmid content in eukaryotic and prokaryotic cells using real-time PCR
-
Carapuça E, Azzoni AR, Prazeres DM, Monteiro GA, Mergulhão FJ. Time-course determination of plasmid content in eukaryotic and prokaryotic cells using real-time PCR. Mol. Biotechnol. 37:120-126. http://dx.doi.org/10.1007/s12033-007-0007-3.
-
Mol. Biotechnol.
, vol.37
, pp. 120-126
-
-
Carapuça, E.1
Azzoni, A.R.2
Prazeres, D.M.3
Monteiro, G.A.4
Mergulhão, F.J.5
-
19
-
-
42449157617
-
Improved determination of plasmid copy number using quantitative real-time PCR for monitoring fermentation processes
-
Skulj M, Okrslar V, Jalen S, Jevsevar S, Slanc P, Strukelj B, Menart V. Improved determination of plasmid copy number using quantitative real-time PCR for monitoring fermentation processes. Microb. Cell Fact. 7:6. http://dx.doi.org/10.1186/1475-2859-7-6.
-
Microb. Cell Fact.
, vol.7
, pp. 6
-
-
Skulj, M.1
Okrslar, V.2
Jalen, S.3
Jevsevar, S.4
Slanc, P.5
Strukelj, B.6
Menart, V.7
-
20
-
-
34047249592
-
Regulatory crosstalk in the double par locus of plasmid pB171
-
Ringgaard S, Ebersbach G, Borch J, Gerdes K. 2007. Regulatory crosstalk in the double par locus of plasmid pB171. J. Biol. Chem. 282:3134- 3145. http://dx.doi.org/10.1074/jbc.M609092200.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 3134-3145
-
-
Ringgaard, S.1
Ebersbach, G.2
Borch, J.3
Gerdes, K.4
-
21
-
-
0035910030
-
The double par locus of virulence factor pB171: DNA segregation is correlated with oscillation of ParA
-
Ebersbach G, Gerdes K. 2001. The double par locus of virulence factor pB171: DNA segregation is correlated with oscillation of ParA. Proc. Natl. Acad. Sci. U. S. A. 98:15078-15083. http://dx.doi.org/10.1073/pnas.261569598.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A
, vol.98
, pp. 15078-15083
-
-
Ebersbach, G.1
Gerdes, K.2
-
22
-
-
35348829219
-
Structural analysis of the ParR/parC plasmid partition complex
-
Møller-Jensen J, Ringgaard S, Mercogliano CP, Gerdes K, Löwe J. 2007. Structural analysis of the ParR/parC plasmid partition complex. EMBO J. 26:4413-4422. http://dx.doi.org/10.1038/sj.emboj.7601864.
-
(2007)
EMBO J
, vol.26
, pp. 4413-4422
-
-
Møller-Jensen, J.1
Ringgaard, S.2
Mercogliano, C.P.3
Gerdes, K.4
Löwe, J.5
-
23
-
-
0028278606
-
Partitioning of plasmid R1,The parA operon is autoregulated by ParR and its transcription is highly stimulated by a downstream activating element
-
Jensen RB, Dam M, Gerdes K. 1994. Partitioning of plasmid R1. The parA operon is autoregulated by ParR and its transcription is highly stimulated by a downstream activating element. J. Mol. Biol. 236:1299-1309.
-
(1994)
J. Mol. Biol
, vol.236
, pp. 1299-1309
-
-
Jensen, R.B.1
Dam, M.2
Gerdes, K.3
-
24
-
-
34548363677
-
Bright far-red fluorescent protein for whole-body imaging
-
Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM. 2007. Bright far-red fluorescent protein for whole-body imaging. Nat. Methods 4:741-746. http://dx.doi.org/10.1038/nmeth1083.
-
(2007)
Nat. Methods
, vol.4
, pp. 741-746
-
-
Shcherbo, D.1
Merzlyak, E.M.2
Chepurnykh, T.V.3
Fradkov, A.F.4
Ermakova, G.V.5
Solovieva, E.A.6
Lukyanov, K.A.7
Bogdanova, E.A.8
Zaraisky, A.G.9
Lukyanov, S.10
Chudakov, D.M.11
-
25
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
Gillespie DT. 2007. Stochastic simulation of chemical kinetics. Annu. Rev. Phys. Chem. 58:35-55. http://dx.doi.org/10.1146/annurev.physchem.58.032806.104637.
-
(2007)
Annu. Rev. Phys. Chem
, vol.58
, pp. 35-55
-
-
Gillespie, D.T.1
-
26
-
-
0019422594
-
Construction and characterization of new cloning vehicles
-
Covarrubias L, Cervantes L, Covarrubias A, Soberon X, Vichido I, Blanco A, Kupersztoch-Portnoy YM, Bolivar F. 1981. Construction and characterization of new cloning vehicles. V. Mobilization and coding properties of pBR322 and several deletion derivatives including pBR327 and pBR328. Gene 13:25-35.
-
(1981)
V. Mobilization and coding properties of pBR322 and several deletion derivatives including pBR327 and pBR328. Gene
, vol.13
, pp. 25-35
-
-
Covarrubias, L.1
Cervantes, L.2
Covarrubias, A.3
Soberon, X.4
Vichido, I.5
Blanco, A.6
Kupersztoch-Portnoy, Y.M.7
Bolivar, F.8
-
27
-
-
0028222812
-
Partitioning of plasmid R1,Ten direct repeats flanking the parA promoter constitute a centromere-like partition site parC, that expresses incompatibility
-
Dam M, Gerdes K. 1994. Partitioning of plasmid R1. Ten direct repeats flanking the parA promoter constitute a centromere-like partition site parC, that expresses incompatibility. J. Mol. Biol. 236:1289-1298.
-
(1994)
J. Mol. Biol
, vol.236
, pp. 1289-1298
-
-
Dam, M.1
Gerdes, K.2
-
28
-
-
0346980557
-
Bacterial mitosis: ParM of plasmid R1 moves plasmid DNA by an actin-like insertional polymerization mechanism
-
Møller-Jensen J, Borch J, Dam M, Jensen RB, Roepstorff P, Gerdes K. Bacterial mitosis: ParM of plasmid R1 moves plasmid DNA by an actin-like insertional polymerization mechanism. Mol. Cell 12:1477- 1487. http://dx.doi.org/10.1016/S1097-2765(03)00451-9.
-
Mol. Cell
, vol.12
, pp. 1477-1487
-
-
Møller-Jensen, J.1
Borch, J.2
Dam, M.3
Jensen, R.B.4
Roepstorff, P.5
Gerdes, K.6
-
29
-
-
39149093674
-
Escherichia coli low-copy-number plasmid R1 centromere parC forms a U-shaped complex with its binding protein ParR
-
Hoischen C, Bussiek M, Langowski J, Diekmann S. 2008. Escherichia coli low-copy-number plasmid R1 centromere parC forms a U-shaped complex with its binding protein ParR. Nucleic Acids Res. 36:607-615. http://dx.doi.org/10.1093/nar/gkm672.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 607-615
-
-
Hoischen, C.1
Bussiek, M.2
Langowski, J.3
Diekmann, S.4
-
30
-
-
37549052560
-
Segrosome structure revealed by a complex of ParR with centromere DNA
-
Schumacher MA, Glover TC, Brzoska AJ, Jensen SO, Dunham TD, Skurray RA, Firth N. 2007. Segrosome structure revealed by a complex of ParR with centromere DNA. Nature 450:1268-1271. http://dx.doi.org/10.1038/nature06392.
-
(2007)
Nature
, vol.450
, pp. 1268-1271
-
-
Schumacher, M.A.1
Glover, T.C.2
Brzoska, A.J.3
Jensen, S.O.4
Dunham, T.D.5
Skurray, R.A.6
Firth, N.7
-
31
-
-
0033932517
-
A plasmid partition system of the P1-P7par family from the pMT1 virulence plasmid of Yersinia pestis
-
Youngren B, Radnedge L, Hu P, Garcia E, Austin S. 2000. A plasmid partition system of the P1-P7par family from the pMT1 virulence plasmid of Yersinia pestis. J. Bacteriol. 182:3924-3928. http://dx.doi.org/10.1128/JB.182.14.3924-3928.2000.
-
(2000)
J. Bacteriol
, vol.182
, pp. 3924-3928
-
-
Youngren, B.1
Radnedge, L.2
Hu, P.3
Garcia, E.4
Austin, S.5
-
32
-
-
60849096091
-
Switching protein- DNA recognition specificity by single-amino-acid substitutions in the P1 par family of plasmid partition elements
-
Dabrazhynetskaya A, Brendler T, Ji X, Austin S. 2009. Switching protein- DNA recognition specificity by single-amino-acid substitutions in the P1 par family of plasmid partition elements. J. Bacteriol. 191:1126- 1131. http://dx.doi.org/10.1128/JB.01358-08.
-
(2009)
J. Bacteriol
, vol.191
, pp. 1126-1131
-
-
Dabrazhynetskaya, A.1
Brendler, T.2
Ji, X.3
Austin, S.4
-
33
-
-
24344480478
-
Species and incompatibility determination within the P1par family of plasmid partition elements
-
Dabrazhynetskaya A, Sergueev K, Austin S. 2005. Species and incompatibility determination within the P1par family of plasmid partition elements. J. Bacteriol. 187:5977-5983. http://dx.doi.org/10.1128/JB.187.17.5977-5983.2005.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5977-5983
-
-
Dabrazhynetskaya, A.1
Sergueev, K.2
Austin, S.3
|