Sensitive detection of T4 polynucleotide kinase activity based on coupled exonuclease reaction and nicking enzyme-assisted fluorescence signal amplification

Analytical and Bioanalytical Chemistry

Volumn 406, Issue 12, 2014, Pages 2943-2948

  Hou, Ting ^a   Wang, Xiuzhong ^a   Lu, Tingting ^b   Liu, Xiaojuan ^a   Li, Feng ^a  

^a QINGDAO AGRICULTURAL UNIVERSITY   (China)

^b QINGDAO UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

Fluorescent biosensor; Nicking enzyme signal amplification; T4 polynucleotide kinase activity; exonuclease

Indexed keywords

ASSAYS; CONTRAST MEDIA; FLUORESCENCE; NUCLEIC ACIDS; NUCLEOTIDES; SIGNAL PROCESSING; SUGAR SUBSTITUTES;

EXONUCLEASE; FLUORESCENCE SIGNAL AMPLIFICATION; HIGHLY SENSITIVE DETECTIONS; HOMOGENEOUS SOLUTIONS; LOW DETECTION LIMIT; POTENTIAL INHIBITORS; SIGNAL AMPLIFICATIONS; T4 POLYNUCLEOTIDE KINASE;

ENZYME INHIBITION;

DNA; ENZYME INHIBITOR; EXONUCLEASE; POLYNUCLEOTIDE 5' HYDROXYL KINASE;

ANTAGONISTS AND INHIBITORS; BIOCATALYSIS; CHEMISTRY; ENZYME ASSAY; EVALUATION STUDY; FLUORESCENCE; KINETICS; PHOSPHORYLATION; PROCEDURES; SENSITIVITY AND SPECIFICITY; SPECTROFLUOROMETRY;

BIOCATALYSIS; DNA; ENZYME ASSAYS; ENZYME INHIBITORS; EXONUCLEASES; FLUORESCENCE; KINETICS; PHOSPHORYLATION; POLYNUCLEOTIDE 5'-HYDROXYL-KINASE; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, FLUORESCENCE;

EID: 84904389594     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-014-7719-6     Document Type: Article

References (47)

1. Ma CB, Yeung ES (2010) Anal Bioanal Chem 397:2279-2284
2. Tang ZW,Wang KM, TanWH,Ma CB, Li J, Liu LF, Guo QP,Meng XX (2005) Nucleic Acids Res 33:e97
3. Wang LK, Lima CD, Shuman S (2002) EMBO J 21:3873-3880
4. Whitehouse CJ, Taylor RM, Thistlethwaite A, Zhang H, Karimi- Busheri F, Lasko DD, Weinfeld M, Caldecott KW (2001) Cell 104: 107-117
5. Lown JW, McLaughlin LW (1979) Biochem Pharmacol 28:1631-1638
6. HennerWD, Rodriguez LO, Hecht SM, HaseltineWA (1983) J Biol Chem 258:711-713
7. Torriglia A, Perani P, Brossas JY, Chaudun E, Treton J, Courtois Y, Counis MF (1998) Mol Cell Biol 18:3612-3619
8. El Atifi M, Dupre I, Rostaing B, Benabid AL, Berger F (2003) Bio Tech 35:262-266
9. Frauendorf C, Hausch F, Rohl I, Lichte A, Vonhoff S, Klussmann S (2003) Nucleic Acids Res 31:e34
10. Lee CK, Brown BG, Bombick BR, Doolittle DJ (1995) Anal Biochem 227:156-161
11. Phillips DH, Arlt VM (2007) Nat Protoc 2:2772-2781
12. Chappell C, Hanakahi LA, Karimi-Busheri F, Weinfeld M, West SC (2002) EMBO J 21:2827-2832
13. Galburt EA, Pelletier J,Wilson G, Stoddard BL (2002) Structure 10: 1249-1260
14. Karimi-Busheri F, Rasouli-Nia A, Allalunis-Turner J, Weinfeld M (2007) Cancer Res 67:6619-6625
15. Rasouli-Nia A, Karimi-Busheri F,WeinfeldM(2004) ProcNatlAcad Sci U S A 101:6905-6910
16. Sharma S, Doherty KM, Brosh RM (2006) Biochem J 398:319-337
17. Bernstein NK, Williams RS, Rakovszky ML, Cui D, Green R, Karimi-Busheri F, Mani RS, Galicia S, Koch CA, Cass CE, Durocher D,Weinfeld M, Glover JNM (2005) Mol Cell 17:657-670
18. Karimi-Busheri F, Lee J,Weinfeld M, TomkinsonAE (1998) Nucleic Acids Res 26:4395-4400
19. Karimi-Busheri F, Daly G, Robins P, Canas B, Pappin DJC, Sgouros J, Miller GG, Fakhrai H, Davis EM, Le Beau MM, Weinfeld M (1999) J Biol Chem 274:24187-24194
20. Meijer M, Karimi-Busheri F, Huang TY, Weinfeld M, Young D (2002) J Biol Chem 277:4050-4055
21. Wang LK, Shuman S (2001) J Biol Chem 276:26868-26874
22. Hou T,Wang XZ, Liu XJ, Lu TT, Liu SF, Li F (2014) Anal Chem86: 884-890
23. Chen F, Zhao Y, Qi L, Fan C (2013) Biosens Bioelectron 47:218-224
24. Huang Y, Chen J, Shi M, Zhao S, Chen ZF, Liang H (2013) J Mater Chem B 1:2018-2021
25. Jiao H,Wang B, Chen J, Liao D, LiW, Yu C (2012) Chem Commun 48:7862-7864
26. Lin L, Liu Y, Zhao X, Li J (2011) Anal Chem 83:8396-8402
27. Zhang L, Zhao J, Zhang H, Jiang JH, Yu RQ (2013) Biosens Bioelectron 44:6-9
28. Wu W, Hu H, Li F, Wang L, Gao J, Lu J, Fan C (2011) Chem Commun 47:1201-1203
29. Song C, Zhao MP (2009) Anal Chem 81:1383-1388
30. Jiang C, Yan C, Jiang J, Yu R (2013) Anal Chim Acta 766:88-93
31. Lin L, Liu Y, Yan J, Wang X, Li J (2013) Anal Chem 85:334-340
32. Wang G, He X, Xu G, Chen L, Zhu Y, Zhang X, Wang L (2013) Biosens Bioelectron 43:125-130
33. Wang Y, He X, Wang K, Ni X, Su J, Chen Z (2012) Biosens Bioelectron 32:213-218
34. Higgins LS, Besnier C, Kong H (2001) Nucleic Acids Res 29:2492-2501
35. Morgan RD, Calvet C, Demeter M, Agra R, Kong H (2000) Biol Chem 381:1123-1125
36. Song G, Chen C, Ren J, Qu X (2009) ACS Nano 3:1183-1189
37. Cao Y, Zhu S, Yu JC, ZhuXJ, Yin YM, LiGX (2012) Anal Chem 84: 4314-4320
38. Ji HX, Yan F, Lei JP, Ju HX (2012) Anal Chem 84:7166-7171
39. Li J, Fu HE, Wu LJ, Zheng AX, Chen GN, Yang HH (2012) Anal Chem 84:5309-5315
40. Wang GL, Zhang CY (2012) Anal Chem 84:7037-7042
41. Xue LY, Zhou XM, Xing D (2012) Anal Chem 84:3507-3513
42. Zhou H, Liu J, Xu JJ, Chen HY (2011) Anal Chem 83:8320-8328
43. Little JW (1967) J Biol Chem 242:679-686
44. Perkins TT, Dalal RV, Mitsis PG, Block SM (2003) Science 301: 1914-1918
45. Subramanian K, Rutvisuttinunt W, Scott W, Myers RS (2003) Nucleic Acids Res 31:1585-1596
46. Lillehaug JR, Kleppe K (1975) Biochem 14:1225-1229
47. Lillehaug JR, Kleppe RK, Kleppe K (1976) Biochem 15: 1858-1865