Diet and diversification in the evolution of coral reef fishes

PLoS ONE

Volumn 9, Issue 7, 2014, Pages

  Lobato, Fabio L ^a   Barneche, Diego R ^b   Siqueira, Alexandre C ^a   Liedke, Ana M R ^a   Lindner, Alberto ^a   Pie, Marcio R ^c   Bellwood, David R ^d   Floeter, Sergio R ^a  

^a FEDERAL UNIVERSITY OF SANTA CATARINA   (Brazil)

^b MACQUARIE UNIVERSITY   (Australia)

^c FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

^d JAMES COOK UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ACANTHUROIDEI; ALGA; ARTICLE; CHAETODONTIDAE; CORAL; CORAL REEF; DETRITUS; DIETARY INTAKE; ECOLOGICAL NICHE; FOOD AVAILABILITY; FOOD QUALITY; LABRIDAE; NONHUMAN; PHYLOGENY; POMACENTRIDAE; SPECIES DIFFERENTIATION; SPECIES DIVERSITY; SPECIES RICHNESS; SPONGE (PORIFERA); ANIMAL; BIODIVERSITY; DIET; FISH; MOLECULAR EVOLUTION;

ANIMALS; BIODIVERSITY; CORAL REEFS; DIET; EVOLUTION, MOLECULAR; FISHES; PHYLOGENY;

EID: 84904312756     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0102094     Document Type: Article

References (96)

1. Ricklefs RE (2007) Estimating diversification rates from phylogenetic information. Ecol Lett 22: 601-610.
2. Renema W, Bellwood DR, Braga JC, Bromfield K, Hall R, et al. (2008) Hopping hotspots: global shifts in marine biodiversity. Science 321: 654-657.
3. Rabosky DL (2009) Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions. Ecol Lett 12: 735-743.
4. Price SA, Holzman R, Near TJ, Wainwright PC (2011) Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes. Ecol Lett 14: 462-469.
5. Cowman PF, Bellwood DR (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. J Evol Biol 24(12): 2543-2562.
6. Sepkoski JJ (1998) Rates of speciation in the fossil record. Philos Trans R Soc Lond B, Biol Sci 353: 315-326.
7. Espeland M, Murienne J (2011) Diversity dynamics in New Caledonia: towards the end of the Museum model? BMC Evol Biol 11: 254.
8. Rabosky DL, Lovette IJ (2008) Density-dependent diversification in North American wood warblers. Philos Trans R Soc Lond B, Biol Sci 275: 2363-2371.
9. Walker TD, Valentine JW (1984) Equilibrium models of evolutionary diversity and the number of empty niches. Am Nat 124: 887-899. (Pubitemid 16276193)
10. Phillimore AB, Price TD (2008) Density-dependent cladogenesis in birds. PLoS Biol 6: 483-489.
11. White JW, Samhouri JF, Stier AC, Wormald CL, Hamilton SL, et al. (2010) Synthesizing mechanisms of density dependence in reef fishes: behavior, habitat configuration, and observational scale. Ecology 91: 1949-1961.
12. Ricklefs RE (2003) Global diversification rates of passerine birds. Philos Trans R Soc Lond B, Biol Sci 270: 2285-2291.
13. Rüber L, Zardoya R (2005) Rapid cladogenesis in marine fishes revisited. Evolution 59: 1119-1127. (Pubitemid 40728439)
14. Bellwood DR (1996) The Eocene fishes of Monte Bolca: the earliest coral reef fish assemblage. Coral Reefs 15: 11-19.
15. Wainwright PC, Bellwood DR (2002) Ecomorphology of feeding in coral reef fishes. In: Sale PF, editor. Coral reef fishes: dynamics and diversity on a complex ecosystem. San Diego: Academic Press. pp. 33-55.
16. Harmelin-Vivien ML (2002) Energetics and fish diversity on coral reefs. In: Sale PF, editor. Coral reef fishes: dynamics and diversity on a complex ecosystem. San Diego: Academic Press. pp. 265-274.
17. Floeter SR, Ferreira CEL, Dominici-Arosemena A, Zalmon IR (2004) Latitudinal gradients in Atlantic reef fish communities: trophic structure and spatial use patterns. J Fish Biol 64: 1680-1699. (Pubitemid 38831410)
18. Bruggemann JH, Begeman J, Bosna EM, Verbug P, Breeman AM (1994) Foraging by the stoplight parrotfish Sparisoma viride. II. Intake and assimilation of food, protein, and energy. Mar Ecol Prog Ser 112: 57-71.
19. Bowen SH, Lutz EV, Ahlgren MO (1995) Dietary protein as determinants of food quality: trophic strategies compared. Ecology 76: 899-907.
20. Ferreira CEL, Peret AC, Coutinho R (1998) Seasonal grazing rates and food processing by tropical herbivorous fishes. J Fish Biol 53: 222-235.
21. Horn MH (1998) Feeding and digestion. In: Evans DH, editor. The Physiology of Fishes. New York: CRC Press. pp. 41-60.
22. Hay ME (1991) Fish-seaweed interactions on coral reefs: effects of herbivorous fishes and adaptations of their prey. In: Sale PF, editor. The Ecology of Fishes on Coral Reefs. San Diego: Academic Press. pp. 96-119.
23. Paul VJ (1992) Chemical defenses of benthic marine invertebrates. In: Sale PF, editor. Ecological Roles of Marine Natural Products. Ithaca: Comstock. pp. 164-188.
24. Burns E, Ilan M (2003) Comparison of anti-predatory defenses of Red Sea and Caribbean sponges. II. Physical defence. Mar Ecol Prog Ser 252: 115-123. (Pubitemid 36599440)
25. Burns E, Ifrach I, Carmeli S, Pawlik JR, Ilan M (2003) Comparison of antipredatory defenses of Red Sea and Caribbean sponges. II. Chemical defence. Mar Ecol Prog Ser 252: 105-114. (Pubitemid 36599439)
26. Horn MH (1989) Biology of marine herbivorous fishes. Oceanogr Mar Biol Annu Rev 27: 167-272.
27. Choat JH, Bellwood DR (1991) Reef fishes: their history and evolution. In: Sale PF, editor. The Ecology of fishes on Coral Reefs. San Diego: Academic Press. pp. 39-60.
28. Meylan A (1991) Nutritional characteristics of sponges in the diet of the hawksbill turtle, Eretmochelys imbricata. In: Rützler K, editor. New Perspectives in Sponge Biology. Washington: Smithsonian Institution Press. pp. 472-477.
29. Choat JH, Clements KD (1998) Vertebrate herbivores in marine and terrestrial environments: a nutritional ecology perspective. Annu Rev Ecol Syst 29: 375-403. (Pubitemid 29033037)
30. Choat JH, Clements KD (2002) The trophic status of herbivorous fishes on coral reefs 1: dietary analyses. Mar Biol 140: 613-623. (Pubitemid 36064339)
31. Bellwood DR (1998) What are coral reef fishes? - Comment on the report by D.R. Robertson: Do coral reef fish faunas have a distinctive taxonomic structure? (Coral Reefs 17: 179-196). Coral Reefs 17: 187-189.
32. Wainwright PC, Bellwood DR, Westneat MW, Grubich JR, Hoey AS (2004) A functional morphospace for the skull of labrid fishes: patterns of diversity in complex biomechanical systems. Biol J Linn Soc lond 82: 1-25. (Pubitemid 38653703)
33. Kuiter RH (2010) Labridae fishes: Wrasses. Seaford: Aquatic Photographics. 390 p.
34. Froese R, Pauly D (2014) FishBase: World Wide Web electronic publication. Available: www.fishbase.org. Accessed 2014 Jan 17.
35. Cooper WJ, Westneat MW (2009) Form and function of damselfish skulls: rapid and repeated evolution into a limited number of trophic niches. BMC Evol Biol 9: 24.
36. Frédérich B, Sorenson L, Santini F, Slater GJ, Alfaro ME (2013) Iterative Ecological Radiation and Convergence during the Evolutionary History of Damselfishes (Pomacentridae). Am Nat 81: 94-113.
37. Ferry-Graham LA, Wainwright PC, Hulsey CD, Bellwood DR (2001) Evolution and mechanics of long jaws in butterflyfishes (Family Chaetodontidae). J Morphol 248: 120-143.
38. Bellwood DR, Klanten S, Cowman PF, Pratchett MS, Konow N, et al. (2010) Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. J Evol Biol 23: 335-349.
39. KuiterRH(2002) Butterflyfishes, bannerfishes and their relatives: a comprehensive guide to Chaetodontidae and Microcanthidae. Chorleywood: TMC Publishing. 180 p.
40. Near TJ, Dornburg RI, Eytan BP, Keck WL, Smith KL, et al. (2013) Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes. Proc Natl Acad Sci U S A 101: 12738-21743.
41. Klanten SO, van Herwerden L, Choat JH, Blair D (2004) Patterns of lineage diversification in the genus Naso (Acanthuridae). Mol Phylogenet Evol 32: 221-235. (Pubitemid 38851941)
42. Jones RS (1968) Ecological relationships in Hawaiian and Johnston Island acanthurids (surgeonfishes). Micronesica 4: 310-361.
43. Purcell SW, Bellwood DR (1993) A functional analysis of food procurement in two surgeonfish species, Acanthurus nigrofuscus and Ctenochaetus striatus (Acanthuridae). Environ Biol Fishes 37: 139-159.
44. Konow N, Bellwood DR, Wainwright PC, Kerr AM (2008) Evolution of novel jaw joints promote trophic diversity in coral reef fishes. Biol J Linn Soc Lond 93: 545-555. (Pubitemid 351207197)
45. Tang KL, Berendzen PB, Wiley EO, Morrissey JF, Winterbottom R, et al. (1999) The phylogenetic relationships of the suborder Acanthuroidei (Teleostei: Perciformes) based on molecular and morphological evidence. Mol Phylogenet Evol 11: 415-425. (Pubitemid 129499279)
46. Fessler JL, Westneat MW (2007) Molecular phylogenetics of the butterflyfishes (Chaetodontidae): taxonomy and biogeography of a global coral reef fish family. Mol Phylogenet Evol 45: 50-68. (Pubitemid 47380419)
47. Westneat MW, Alfaro ME (2005) Phylogenetic relationships and evolutionary history of the reef fish family Labridae. Mol Phylogenet Evol 36: 370-390. (Pubitemid 40793701)
48. Cooper WJ, Smith LL, Westneat MW (2009) Exploring the radiation of a diverse reef fish family: phylogenetics of the damselfishes (Pomacentridae), with new classifications based on molecular analyses of all genera. Mol Phylogenet Evol 52: 1-16.
49. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882. (Pubitemid 28022245)
50. Maddison DR, Maddison WP (2000) MacClade 4: analysis of phylogeny and character evolution, Version 4.0. Sunderland: Sinauer Associates, Massachusetts, MA. 492 p.
51. Huelsenbeck JP, Ronquist FR (2001) Mrbayes: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
52. Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314. (Pubitemid 33140548)
53. Rambaut A, Drummond AJ (2007) Tracer. Available: http://tree.bio.ed.ac. uk/software/tracer/. Accessed 2012 Feb 7.
54. Drummond AJ, Rambaut A (2007) Bayesian evolution analysis by sampling trees. BMC Evol Biol 7: 214.
55. Drummond AJ, Ho SYW, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: 699-710.
56. Alfaro ME, Santini F, Brock CD (2007) Do reefs drive diversification in marine teleosts? Evidence from the pufferfish and their allies (Order Tetraodontiforms). Evolution 61: 2104-2126. (Pubitemid 47340764)
57. Brown JW, Rest JS, García-Moreno J, Sorenson MD, Mindell DP (2008) Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. BMC Evol Biol 6: 6.
58. Posada D, Crandall KA (1998) Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818. (Pubitemid 28552116)
59. Bannikov AF (2004) Fishes from the Eocene of Bolca, northern Italy, previously classified with the Chaetodontidae (Perciformes). Studi e Ricerche sui Giacimenti Terziari di Bolca 13: 55-74.
60. Bellwood DR, Wainwright PC (2002) The history and biogeography of fishes on coral reefs. In: Sale PF, editor. Coral reef fishes: dynamics and diversity on a complex ecosystem. San Diego: Academic Press. pp. 5-32.
61. Bellwood DR, van Herwerden L, Konow N (2004) Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Mol Phylogenet Evol 33: 140-155. (Pubitemid 39138742)
62. Bannikov AF, Sorbini L (1990) Eocoris bloti, a new genus and species of labrid fish (Perciformes, Labroidei) from the Eocene of Monte Bolca, Italy. Studi e Recereche sui Giacimenti Terziari di Bolca 6: 133-148.
63. Brey T, Rumohr H, Ankar S (1988) Energy content of macrobenthic invertebrates: general conversion factors from weight to energy. J Exp Mar Biol Ecol 117: 271-278.
64. Brey T, Müller-Wiegmann C, Zittier ZMC, Hagen W (2010) Body composition in aquatic organisms - A global data bank of relationships between mass, elemental composition and energy content. J Sea Res 64: 334-340.
65. Bowen SH, Lutz EV, Ahlgren MO (1995) Dietary protein as determinants of food quality: trophic strategies compared. Ecology 76: 899-907.
66. Maddison WP, Maddison DR (2011) Mesquite: a modular system for evolutionary analysis. Available: http://mesquiteproject.org/. Accessed 2012 Jun 10.
67. R Development Core Team (2013) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available: http://www.R-project.org/. Accessed 2013 Jan 20.
68. Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289-290. (Pubitemid 38195693)
69. Harmon LJ, Weir JT, Brock CD, Glor RE, Challenger W (2008) GEIGER: investigating evolutionary radiations. Bioinformatics 24: 129-131.
70. Rabosky DL (2006) LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies. Evol Bioinform Online 2: 273-276.
71. Pybus OG, Harvey PH (2000) Testing macro-evolutionary models using incomplete molecular phylogenies. Philos Trans R Soc Lond B, Biol Sci 267: 2267-2272.
72. Magallon S, Sanderson MJ (2001) Absolute diversification rates in angiosperm clades. Evolution 55: 1762-1780. (Pubitemid 32983995)
73. Eschmeyer WN (2012) Catalog of Fishes. Available: http://researcharchive. calacademy.org/research/ichthyology/catalog/fishcatmain.asp. Accessed 2012 Jan 10.
74. Nee S, Mooers O, Harvey PH (1992) Tempo and mode of evolution revealed from molecular phylogenies. Proc Natl Acad Sci USA 89: 8322-8326.
75. Rabosky DL (2007) Likelihood methods for detecting temporal shifts in diversification rates. Evolution 60: 1152-1164.
76. Sanderson MJ (1994) Reconstructing the evolution of genes and organisms using maximum likelihood. In: Fambrough D, editor. Molecular evolution of physiological processes. New York: Rockefeller. pp. 13-26.
77. Sanderson MJ, Wojciechowski MF (1996) Diversification rates in a temperate legume clade: are there "so many species" of Astragalus (Fabaceae)? Am J Bot 83: 1488-1502.
78. Rabosky DL, Donnellan SC, Talaba AL, Lovette IJ (2007) Exceptional among-lineage variation in diversification rates during the radiation of Australia's largest vertebrate clade. Philos Trans R Soc Lond B, Biol Sci 274: 2915-2923. (Pubitemid 350178491)
79. Kazancioglu E, Near TJ, Hanel R, Wainwright PC (2009) Influence of sexual selection and feeding functional morphology on diversification rate of parrotfishes (Scaridae). Philos Trans R Soc Lond B, Biol Sci 276: 3439-3446.
80. Williams ST, Duda TF (2008) Did tectonic activity stimulate speciation in the Oligo-Miocene Indo-West Pacific? Evolution 62: 1618-1634. (Pubitemid 352000097)
81. Cowman PF, Bellwood DR (2013) The historical biogeography of coral reef fishes: global patterns of origination and dispersal. J Biogeogr 40: 209-224.
82. Bellwood DR, Goatley CHR, Brandl SJ, Bellwood O (2014) Fifty million years of herbivory on coral reefs: fossils, fish and functional innovations. Philos Trans R Soc Lond B, Biol Sci 281: 20133046.
83. Price SA, Tavera JJ, Near TJ, Wainwright PC (2010) Functional innovations and morphological diversification in parrotfish. Evolution 64: 3057-3068.
84. Choat JH, Klanten OS, van Herwerden L, Robertson DR, Clements KD (2012) Patterns and processes in the evolutionary history of parrotfishes (family Labridae). Biol J Linn Soc 107: 529-557.
85. Hoey AS, Bellwood DR, Barnett A (2012) To feed or to breed: morphological constraints of mouthbrooding in coral reef cardinalfishes. Philos Trans R Soc Lond B, Biol Sci 279: 2426-2432.
86. Clements KD, Alfaro ME, Fessler J, Westneat MW (2004) Relationships of the Temperate Australasian Labrid Fish Tribe Odacini (Perciformes: Teleostei). Mol Phylogenet Evol 32: 575-587. (Pubitemid 38836856)
87. Cowman PF, Bellwood DR, van Herwerden L (2009) Dating the evolutionary origins of wrasse lineages (Labridae) and the rise of trophic novelty on coral reefs. Mol Phylogenet Evol 52: 621-631.
88. Wilson S, Bellwood DR, Choat JH, Furnas M (2003) Detritus in coral reef ecosystems and its use by coral reef fishes. Oceanogr Mar Biol 41: 279-309.
89. Kramer MJ, Bellwood O, Bellwood DR (2013) The trophic importance of algal turfs for coral reef fishes: the crustacean link. Coral Reefs 32: 575-583.
90. Bellwood DR, Hoey AS, Bellwood O, Goatley CHR (2014) Evolution of long-toothed fishes and the changing nature of fish-benthos interactions on coral reefs. Nat Commun 5: 3144.
91. Streelman JT, Alfaro ME, Westneat MW, Bellwood DR, Karl SA (2002) Evolutionary history of the parrotfishes: biogeography, ecomorphology, and comparative diversity. Evolution 56: 961-971. (Pubitemid 34617019)
92. Elliott J, Bellwood DR (2003) Alimentary tract morphology and diet in three coral reef fish families. J Fish Biol 63: 1598-1609. (Pubitemid 38718026)
93. Vermeij GJ, Lindberg DR (2000) Delayed herbivory and the assembly of marine ecosystems. Paleobiology 26: 419-430.
94. Kotrschal K (1988) Evolutionary patterns in tropical marine reef fish feeding. J Zoolog Syst Evol Res 26: 51-64.
95. Bellwood DR (1990) A new fossil fish Phyllopharyngodon longipinnis gen. et sp. nov. (family Labridae) from the Eocene, Monte Bolca, Italy. Studi e Ricerche sui Giacimenti Terziari di Bolca 6: 149-160.
96. Smith LL, Fessler JL, Alfaro ME, Streelman JT, Westneat MW (2008) Phylogenetic relationships and the evolution of regulatory gene sequences in the parrotfishes. Mol Phylogenet Evol 49: 136-152.