Molecular genetic diversity and population structure in Eucalyptus pauciflora subsp. pauciflora (Myrtaceae) on the island of Tasmania

Australian Journal of Botany

Volumn 62, Issue 3, 2014, Pages 175-188

  Gauli, Archana ^a   Steane, Dorothy A ^a,b   Vaillancourt, René E ^a   Potts, Brad M ^a  

^a UNIVERSITY OF TASMANIA   (Australia)

^b UNIVERSITY OF THE SUNSHINE COAST   (Australia)

Author keywords

Eucalyptus pauciflora; genetic diversity; haplotypes; molecular markers; spatial structure

Indexed keywords

CHLOROPLAST; GENE FLOW; GENETIC VARIATION; MIGRATION; POLLEN; POPULATION STRUCTURE; RIVER; SEED DISPERSAL; STORM; TREE; VALLEY;

AUSTRALIA; TAMAR VALLEY; TASMANIA;

EID: 84904130476     PISSN: 00671924     EISSN: 14449862     Source Type: Journal    
DOI: 10.1071/BT14036     Document Type: Article

References (75)

1. Austerlitz F, Mariette S, Machon N, Gouyon P-H, Godelle B (2000) Effects of colonization processes on genetic diversity: differences between annual plants and tree species. Genetics 154, 1309-1321. (Pubitemid 30140715)
2. Bailey T, Davidson N, Potts B, Gauli A, Hovenden M, Burgess S, Duddles J (2013) Plantings for carbon, biodiversity and restoration in dry rural landscapes. Australian Forest Grower 35, 39-41.
3. Baillie PW (1989) Jurassic-Cainozoic. In 'Geology and mineral resources of Tasmania'. (Eds CR Burrett, EL Martin) pp. 339-409. (Geological Society of Australia: Melbourne)
4. Bloomfield JA, Nevill P, Potts BM, Vaillancourt RE, Steane DA (2011a) Molecular genetic variation in a widespread forest tree species Eucalyptus obliqua (Myrtaceae) on the island of Tasmania. Australian Journal of Botany 59, 226-237. doi:10.1071/BT10315
5. Bloomfield JA, Nevill P, Vaillancourt RE, Steane DA, Potts BM (2011b) Stringy bark diversity study winds up: new data on genetic diversity in Eucalyptus obliqua on the island of Tasmania. In 'Biobuzz. Vol. 15'. (CRC for Forestry: Hobart) Available at http://www.crcforestry.com.au/ view/index71dc.html?id=81972. [Accessed 20 February 2014]
6. Boland DJ, Brooker MIH, Chippendale GM, Hall N, Hyland BPM, Johnston RD, Kleinig DA, Turner JD (2002) 'Forest trees of Australia.' (CSIRO: Canberra)
7. Brondani RPV, Brondani C, Tarchini R, Grattapaglia D (1998) Development, characterization and mapping of microsatellite markers in Eucalyptus grandis and E. urophylla. Theoretical and Applied Genetics 97, 816-827. doi:10.1007/s001220050961 (Pubitemid 28519377)
8. Brondani RPV, Williams ER, Brondani C, Grattapaglia D (2006) A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus. BMC Plant Biology 6, 20. doi:10.1186/1471-2229-6-20 (Pubitemid 44567711)
9. Byrne M (2008) Phylogeny, diversity and evolution of eucalypts. In 'Plant genome: biodiversity and evolution. Vol. 1. Part E. Phanerogams- Angiosperm'. (Eds AK Sharma, A Sharma) pp. 303-346. (Science Publishers: Berlin, Germany)
10. Byrne M, Parrish TL, Moran GF (1998) NuclearRFLPdiversity in Eucalyptus nitens. Heredity 81, 225-233. doi:10.1046/j.1365-2540.1998.00386.x
11. Demesure B, Comps B, Petit RJ (1996) Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution 50, 2515-2520. doi:10.2307/2410719 (Pubitemid 27114684)
12. Dodson J (1977) Late Quaternary palaeoecology of Wyrie Swamp, southeastern South Australia. Quaternary Research 8, 97-114. doi:10.1016/0033-5894(77)90058-8
13. Doyle JJ, Doyle JL (1990) Isolation of plantDNAfrom fresh tissue. Focus 12, 13-15.
14. Duncan F (1989) Systematic affinities, hybridisation and clinal variation within Tasmanian eucalypts. Tasforests 2, 13-26.
15. Earl DA, von Holdt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing structure output and implementing the Evanno method. Conservation Genetics Resources 4, 359-361. doi:10.1007/s12686-011-9548-7
16. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L) Skeels] endemic to Morocco. Theoretical and Applied Genetics 92, 832-839. doi:10.1007/BF00221895 (Pubitemid 26270161)
17. Ennos RA (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity 72, 250-259. doi:10.1038/hdy.1994.35 (Pubitemid 2057321)
18. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14, 2611-2620. doi:10.1111/j.1365-294X.2005.02553.x (Pubitemid 40886055)
19. Ferris C, King RA, Väinölä R, Hewitt GM (1998) Chloroplast DNA recognizes three refugial sources of European oaks and suggests independent eastern and western immigrations to Finland. Heredity 80, 584-593. doi:10.1046/j.1365-2540.1998.00342.x (Pubitemid 28326459)
20. Finkeldey R, Mátyás G (2003) Genetic variation of oaks (Quercus spp.) in Switzerland. 3. Lack of impact of postglacial recolonization history on nuclear gene loci. Theoretical and Applied Genetics 106, 346-352. (Pubitemid 36599893)
21. Freeman JS, Jackson HD, Steane DA, McKinnon GE, Potts BM, Vaillancourt RE (2001) Chloroplast DNA phylogeography of Eucalyptus globulus. Australian Journal of Botany 49, 585-596. doi:10.1071/BT00094 (Pubitemid 33066308)
22. Gauli A, Vaillancourt RE, Steane DA, Bailey TG, PottsBM(2014) The effect of forest fragmentation and altitude on the mating system of Eucalyptus pauciflora (Myrtaceae). Australian Journal of Botany 61, 622-632. doi:10.1071/BT13259
23. Glaubitz JC, Emebiri LC, Moran GF (2001) Dinucleotide microsatellites from Eucalyptus sieberi: inheritance, diversity, and improved scoring of single-based differences. Genome 44, 1041-1045. doi:10.1139/gen-44-6-1041 (Pubitemid 34004293)
24. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices. Version 2.9.3. Available at http://www.unil.ch/izea/ softwares/fstat.html. [Accessed 20 July 2013]
25. Hardner CM, Potts BM (1997) Post-dispersal selection under mixed-mating in Eucalyptus regnans. Evolution 51, 103-111. doi:10.2307/2410964
26. Heuertz M, Fineschi S, Anzidei M, Pastorelli R, Salvini D, Paule L, Frascaria- Lacoste N, Hardy OJ, Vekemans X, Vendramin GG (2004) Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe. Molecular Ecology 13, 3437-3452. doi:10.1111/j.1365-294X.2004.02333.x (Pubitemid 39415677)
27. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society. Linnean Society of London 58, 247-276. doi:10.1111/j.1095-8312.1996.tb01434.x (Pubitemid 26389802)
28. Hope GS, Kirkpatrick JB (1989) The ecological history of Australian forests. In 'Australia's ever-changing forests'. (Eds K Frawley, N Semple) pp. 3-22. (University College, ADFA: Canberra)
29. House SM (1997) Reproductive biology of eucalypts. In 'Eucalypt ecology: individuals to ecosystems'. (Eds J Williams, JCZ Woinarski) pp. 30-55. (Cambridge University Press: Cambridge, UK)
30. Hufford KM, Hamrick JL (2003) Viability selection at three early life stages of the tropical tree, Platypodium elegans (Fabaceae, Papilionoideae). Evolution 57, 518-526. doi:10.1111/j.0014-3820.2003.tb01543.x (Pubitemid 36453259)
31. Jones RC, Steane DA, Potts BM, Vaillancourt RE (2002) Microsatellite and morphological analysis of Eucalyptus globulus populations. Canadian Journal of Forest Research 32, 59-66. doi:10.1139/x01-172 (Pubitemid 34190524)
32. Jones TH, Vaillancourt RE, Potts BM (2007) Detection and visualization of spatial genetic structure in continuous Eucalyptus globulus forest. Molecular Ecology 16, 697-707. doi:10.1111/j.1365-294X.2006.03180.x (Pubitemid 46233094)
33. Kirkpatrick JB, Brown MJ (1984) The palaeogeographic significance of local endemism in Tasmanian higher plants. Search 15, 112-113.
34. Kirkpatrick JB, Fowler M (1998) Locating likely glacial forest refugia in Tasmania using palynological and ecological information to test alternative climatic models. Biological Conservation 85, 171-182. doi:10.1016/S0006-3207(97) 00144-4 (Pubitemid 28343744)
35. Kremer A, Petit RJ, Stephan BR, Kleinschmit J, Cottrell J, Cundall EP, Deans JD, Ducousso A, König AO, Lowe AJ, Munro RC (2002) Is there a correlation between chloroplastic and nuclear divergence, or what are the roles of history and selection on genetic diversity in European oaks? Forest Ecology and Management 156, 75-87. doi:10.1016/S0378-1127(01)00635-1 (Pubitemid 34196761)
36. Lewis PO, Zaykin D (2002) Genetic data analysis: computer program for the analysis of allelic data. Version 1.1. Available at http://lewis.eeb.uconn. edu/lewishome/software.html. [Accessed 20 July 2013]
37. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Research 27, 209-220.
38. Marchelli P, Gallo L, Scholz F, Ziegenhagen B (1998) Chloroplast DNA markers reveal a geographical divide across Argentinean southern beech Nothofagus nervosa (Phil.) Dim. et Mil. distribution area. Theoretical and Applied Genetics 97, 642-646. doi:10.1007/s001220050940 (Pubitemid 28476429)
39. McKinnon GE, Vaillancourt RE, Jackson HD, Potts BM (2001) Chloroplast sharing in the Tasmanian eucalypts. Evolution 55, 703-711. doi:10.1554/0014- 3820(2001)055[0703:CSITTE]2.0.CO;2 (Pubitemid 32464094)
40. McKinnon GE, Jordan GJ, Vaillancourt RE, Steane DA, Potts BM (2004a) Glacial refugia and reticulate evolution: the case of the Tasmanian eucalypts. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 359, 275-284. doi:10.1098/rstb.2003.1391 (Pubitemid 38231477)
41. McKinnon GE, Vaillancourt RE, Steane DA, Potts BM (2004b) The rare silver gum, Eucalyptus cordata, is leaving its trace in the organellar gene pool of Eucalyptus globulus. Molecular Ecology 13, 3751-3762. doi:10.1111/j.1365-294X. 2004.02364.x (Pubitemid 39569051)
42. Naito Y, Konuma A, Iwata H, Suyama Y, Seiwa K, Okuda T, Lee SL, Muhammad N, Tsumura Y (2005) Selfing and inbreeding depression in seeds and seedlings of Neobalanocarpus heimii (Dipterocarpaceae). Journal of Plant Research 118, 423-430. doi:10.1007/s10265-005-0245-z (Pubitemid 41831859)
43. Nei M (1972) Genetic distance between populations. American Naturalist 106, 283-292. doi:10.1086/282771
44. Nevill P (2010) 'Genetic variation in Eucalyptus regnans F.Muell.' (The University of Melbourne: Melbourne)
45. Nevill PG, Bossinger G, Ades PK (2010) Phylogeography of the world's tallest angiosperm, Eucalyptus regnans: evidence for multiple isolated Quaternary refugia. Journal of Biogeography 37, 179-192. doi:10.1111/j.1365- 2699.2009.02193.x
46. Newton AC, Allnutt TR, GilliesACM, Lowe AJ, EnnosRA(1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends in Ecology & Evolution 14, 140-145. doi:10.1016/S0169-5347(98)01555-9 (Pubitemid 29135463)
47. Nicolle D (2006) 'Eucalypts of Victoria and Tasmania.' (Bloomings Books: Melbourne)
48. Ottewell KM, Donnellan SC, Moran GF, Paton DC (2005) Multiplexed microsatellite markers for the genetic analysis of Eucalyptus leucoxylon (Myrtaceae) and their utility for ecological and breeding studies in other Eucalyptus species. The Journal of Heredity 96, 445-451. doi:10.1093/jhered/ esi057 (Pubitemid 41399410)
49. Patterson B, Wolbang CM, Vaillancourt RE, Potts BM (2000) Inheritance of two chlorophyll mutants in Eucalyptus globulus. Silvae Genetica 49, 290-292. (Pubitemid 32507499)
50. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288-295. doi:10.1111/j.1471-8286.2005.01155.x (Pubitemid 43373825)
51. Petit RJ, Pineau E, Demesure B, Bacilieri R, Ducousso A, Kremer A (1997) Chloroplast DNA footprints of postglacial recolonization by oaks. Proceedings of the National Academy of Sciences, USA 94, 9996-10001. doi:10.1073/pnas.94.18. 9996 (Pubitemid 27408179)
52. Petit RJ, El Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology 12, 844-855. doi:10.1046/j.1523-1739.1998.96489.x (Pubitemid 28395189)
53. Petit RJ, Csaikl UM, Bordács S, Burg K, Coart E, Cottrell J, van Dam B, Deans JD, Dumolin-Lapègue S, Fineschi S, Finkeldey R, Gillies A, Glaz I, Goicoechea PG, Jensen JS, König AO, Lowe AJ, Madsen SF, Mátyás G, Munro RC, Olalde M, Pemonge M-H, Popescu F, Slade D, Tabbener H, Taurchini D, de Vries SGM, Ziegenhagen B, Kremer A (2002a) Chloroplast DNA variation in European white oaks: phylogeography and patterns of diversity based on data from over 2600 populations. Forest Ecology and Management 156, 5-26. doi:10.1016/S0378-1127(01)00645-4 (Pubitemid 34196758)
54. Petit RJ, Deans JD, Espinel S, Fineschi S, Finkeldey R, Glaz I, Goicoechea PG, Jensen JS, König AO, Lowe AJ, Madsen SF, Brewer S, Mátyás G, Munro RC, Popescu F, Slade D, Tabbener H, de Vries SGM, Ziegenhagen B, de Beaulieu J-L, Kremer A, Bordács S, Burg K, Cheddadi R, Coart E, Cottrell J, Csaikl UM, van Dam B (2002b) Identification of refugia and postglacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. Forest Ecology and Management 156, 49-74. doi:10.1016/S0378-1127(01)00634-X (Pubitemid 34196760)
55. Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D, Vendramin GG (2005) Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology 14, 689-701. doi:10.1111/j.1365-294X.2004. 02410.x (Pubitemid 40346461)
56. Pons O, Petit RJ (1996) Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics 144, 1237-1245. (Pubitemid 26378263)
57. Potts BM, Reid JB (1985) Variation in the Eucalyptus gunnii-archeri complex. II. The origin of variation. Australian Journal of Botany 33, 519-541. doi:10.1071/BT9850519 (Pubitemid 16300565)
58. Potts B, Wiltshire R (1997) Eucalypt genetics and genecology. In 'Eucalypt ecology: individuals to ecosystems'. (Eds JE Williams, JCZ Woinarski) pp. 56-91. (Cambridge University Press: Cambridge, UK)
59. Premoli AC, Kitzberger T, Veblen TT (2000) Isozyme variation and recent biogeographical history of the long-lived conifer Fitzroya cupressoides. Journal of Biogeography 27, 251-260. doi:10.1046/j.1365-2699.2000.00402.x (Pubitemid 30661254)
60. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155, 945-959. (Pubitemid 30397141)
61. Pryor LD (1951)Agenetic analysis of some Eucalyptus species. Proceedings of the Linnean Society of New South Wales, 140-148.
62. Pryor LD (1953) Genetic control in Eucalyptus distribution. Proceedings of the Linnean Society of New South Wales, 8-18.
63. Ritland K (2002) Extensions of models for the estimation of mating systems using an independent loci. Heredity 88, 221-228. doi:10.1038/sj.hdy. 6800029 (Pubitemid 34305718)
64. Rousset F (2008) GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources 8, 103-106. doi:10.1111/j.1471-8286.2007.01931.x (Pubitemid 350231212)
65. Schneeweiss GM, Schonswetter P (2011) A re-appraisal of nunatak survival in arctic-alpine phylogeography. Molecular Ecology 20, 190-192. doi:10.1111/j.1365-294X.2010.04927.x
66. Shepherd M, Sexton TR, Thomas D, Henson M, Henry RJ (2010) Geographical and historical determinants of microsatellite variation in Eucalyptus pilularis. Canadian Journal of Forest Research 40, 1051-1063. doi:10.1139/X10-049
67. Sigleo WR, Colhoun EA (1981) A short pollen diagram from Crown Lagoon in the Midlands of Tasmania. Papers and Proceedings of the Royal Society of Tasmania 115, 181-188.
68. Skabo S, Vaillancourt RE, Potts BM (1998) Fine-scale genetic structure of Eucalyptus globulus ssp globulus forest revealed by RAPDs. Australian Journal of Botany 46, 583-594. doi:10.1071/BT97056 (Pubitemid 29184055)
69. Steane DA, Vaillancourt RE, Russell J, Powell W, Marshall D, Potts BM (2001) Development and characterisation of microsatellite loci in Eucalyptus globulus (Myrtaceae). Silvae Genetica 50, 89-91. (Pubitemid 32948746)
70. Steane DA, Jones RC, Vaillancourt RE (2005) A set of chloroplast microsatellite primers for Eucalyptus (Myrtaceae). Molecular Ecology Notes 5, 538-541. doi:10.1111/j.1471-8286.2005.00981.x (Pubitemid 41716841)
71. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370. doi:10.2307/2408641 (Pubitemid 16277759)
72. Williams JE (1991) Biogeographic patterns of three sub-alpine eucalypts in south-east Australia with special reference to Eucalyptus pauciflora Sieb. ex Spreng. Journal of Biogeography 18, 223-230. doi:10.2307/2845295
73. Williams J, LadigesPY(1985) Morphological variation in Victorian, lowland populations of Eucalyptus pauciflora Sieb.ex Spreng. Proceedings of the Royal Society of Victoria 97, 31-48.
74. Williams KJ, Potts BM(1996) The natural distribution of Eucalyptus species in Tasmania. Tasforests 8, 39-165.
75. Yeoh SH, Bell JC, Foley WJ, Wallis IR, Moran GF (2012) Estimating population boundaries using regional and local-scale spatial genetic structure: an example in Eucalyptus globulus. Tree Genetics & Genomes 8, 695-708. doi:10.1007/s11295-011-0457-4