Geographical and historical determinants of microsatellite variation in Eucalyptus pilularis

Canadian Journal of Forest Research

Volumn 40, Issue 6, 2010, Pages 1051-1063

  Shepherd, Mervyn ^a   Sexton, Timothy R ^a   Thomas, Dane ^b   Henson, Michael ^b   Henry, Robert J ^a  

^a SOUTHERN CROSS UNIVERSITY   (Australia)

^b State Forests of New South Wales   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

GENE FLOWS; GENETIC DIVERSITY; GENETIC VARIATION; GEOGRAPHIC REGIONS; GROWTH PERFORMANCE; LARGE POPULATION; LOW LEVEL; MICRO SATELLITE;

GENES; POPULATION STATISTICS;

PLANTS (BOTANY);

ADAPTATION; COLONIZATION; ECOTYPE; EVERGREEN TREE; GENE FLOW; GENETIC ISOLATION; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; GEOGRAPHICAL VARIATION; HISTORICAL PERSPECTIVE; PHYTOGEOGRAPHY; PROVENANCE; RANGE EXPANSION;

AUSTRALIA; FRASER ISLAND; NEW SOUTH WALES; QUEENSLAND; SYDNEY [NEW SOUTH WALES];

EUCALYPTUS; EUCALYPTUS PILULARIS;

EID: 77953210354     PISSN: 00455067     EISSN: None     Source Type: Journal    
DOI: 10.1139/X10-049     Document Type: Article

References (50)

1. Baur, G.N. 1983. Notes on the silviculture of the major forest types of New South Wales. Forest types 4. Blackbutt types. Forestry Commission New South Wales, Sydney, Australia. pp. 3-45.
2. Boland, D.J., Brooker, M.I.H., Chippendale, G.M., Hall, N., Hyland, B.P.M., Johnston, R.D., Kleinig, D.A., McDonald, M.W., and Turner, J.D. 2006. Forest trees of Australia. 5th ed. CSIRO Publishing, Collingwood, Australia.
3. Brondani, R.P.V., Brondani, C., Tarchini, R., and Grattapaglia, D. 1998. Development, characterisation and mapping of microsatel- lite markers in Eucalyptus grandis and E. urophylla. Theor. Appl. Genet. 97(5-6): 816-827. doi:10.1007/s001220050961.
4. Brondani, R.P.V., Williams, E.R., Brondani, C., and Grattapaglia, D. 2006. A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus. BMC Plant Biol. 6(1): 20. doi:10.1186/1471-2229-6-20. PMID: 16995939.
5. Burbidge, N.T. 1960. Phytogeography of the Australian region. Aust. J. Bot. 8(2): 75-211. doi:10.1071/BT9600075.
6. Burgess, I.P. 1975. A provenance trial with blackbutt: 9-year results. Aust. For. Res. 7: 1-9.
7. Butcher, P.A., McDonald, M.W., and Bell, J.C. 2009. Congruence between environmental parameters, morphology and genetic structure in Australia's most widely distributed eucalypt, Eucalyptus camaldulensis. Tree Genet. Genomes, 5(1): 189-210. doi:10.1007/s11295-008-0169-6.
8. Byrne, M. 2007. Phylogeography provides an evolutionary context for the conservation of a diverse and ancient flora. Aust. J. Bot. 55(3): 316-325. doi:10.1071/BT06072.
9. Byrne, M. 2008. Phylogeny, diversity and evolution of eucalypts. In Plant genome biodiversity and evolution. Vol. 1. Part E. Pha- nerogams-Angiosperms. Edited by A.K. Sharma and A. Sharma. Science Publishers, Endfied, N.H., USA. pp. 303-346.
10. Cornuet, J.M., and Luikart, G. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144(4): 2001-2014. PMID: 8978083.
11. Centre for Plant Biodiversity Research. 2006. EUCLID. Eucalypts of Australia. CSIRO Publishing, Canberra, Australia.
12. Crisp, M.D., Laffan, S., Linder, H.P., and Monro, A. 2001. Ende- mism in the Australian flora. J. Biogeogr. 28(2): 183-198. doi:10.1046/j.1365-2699.2001.00524.x.
13. Dutkowski, G.W., and Potts, B.M. 1999. Geographic patterns of genetic variation in Eucalyptus globulus spp. globulus and a revised racial classification. Aust. J. Bot. 47(2): 237-263. doi:10. 1071/BT97114.
14. Eby, P., and Law, B. 2008. Ranking the feeding habitat of Grey- headed flying foxes for conservation management [online]. Available from http://www.environment.gov.au/about/publications/index.html [accessed 14 September 2009].
15. Evanno, G., Regnaut, S., and Goudet, J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14(8): 2611-2620. doi:10.1111/j. 1365-294X.2005.02553.x. PMID:15969739.
16. Excoffier, L., Smouse, P.E., and Quattro, J.M. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131(2): 479-491. PMID:1644282.
17. Florence, R.G. 1964. A comparative study of flowering and seed production in six blackbutt (Eucalyptus pilularis Sm.) forest stands. Aust. For. 28: 23-33.
18. Florence, R.G. 1968. The role of blackbutt in east coast forests. Aust. For. 32: 118-127.
19. Florence, R.G. 1969. Variation in blackbutt. Aust. For. 33: 83-93.
20. Gibbons, P., Ayers, D., Seddon, J., Doyle, S., and Briggs, S. 2008. BioMetric version 2. A terrestrial biodiversity assessment tool for the NSW property vegetation plan developer [online]. Available from http://www.environment.nsw.gov.au/projects/BiometricTool.htm [accessed 10 January 2009].
21. Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) [online]. Available from http://www2.unil.ch/popgen/softwares/fstat.htm [accessed 8 December 2008].
22. Griffin, A.R., Burgess, I.P., and Wolf, L. 1988. Patterns of natural and manipulated hybridisation in the genus Eucalyptus L'Hérit. - a review. Aust. J. Bot. 36(1): 41-66. doi:10.1071/BT9880041.
23. Hedrick, P.W. 1999. Highly variable loci and their interpretation in evolution and conservation. Evolution, 53(2): 313-318. doi:10. 2307/2640768.
24. Henson, M., and Smith, H.J. 2007. Achievements in forest tree genetic improvement in Australia and New Zealand. 1. Eucalyptus pilularis Smith tree improvement in Australia. Aust. For. 70: 4-10.
25. Hill, R.S. 2004. Origins of the southeastern Australian vegetation. Philos. Trans. R. Soc. Lond. B Biol. Sci. 359(1450): 1537-1549. doi:10.1098/rstb.2004.1526. PMID:15519971.
26. Hope, G.S. 1994. Quaternary vegetation. In History of the Australian vegetation: Cretaceous to recent. Edited by R.S. Hill. Cambridge Press, Cambridge, UK. pp. 368-390.
27. House, S.M. 1997. Reproductive biology of eucalypts. In Eucalypt ecology: individuals to ecosystems. Edited by J.E. Williams and J.C.Z. Woinarski. Cambridge University Press, Cambridge, UK. pp. 30-55.
28. Hughes, M., Moller, M., Edwards, T.J., Bellstedt, D.U., and De Villiers, M. 2007. The impact of pollination syndrome and habitat on gene flow: a comparative study of two Streptocarpus (Gesneriaceae) species. Am. J. Bot. 94(10): 1688-1695. doi:10. 3732/ajb.94.10.1688.
29. Johnson, I.G., and Nikles, D.G. 1997. Plan for developing and deploying genetically-improved varieties of Blackbutt (Eucalyptus pilularis Smith) in New South Wales. State Forests of NSW, Forest Research and Development Division, Technical paper No. 63. Sydney, NSW.
30. Keast, A. 1961. Bird speciation on the Australian continent. Bull. Mus. Comp. Zool. 123: 305-495.
31. Ladiges, P.Y. 1997. Phylogenetic history and classification of eucalypts. In Eucalypt ecology: individuals to ecosystems. Edited by J.E. Williams and J.C.Z. Woinarski. Cambridge University Press, Cambridge, UK. pp. 16-29.
32. Law, B., Mackowski, C., Schoer, L., and Tweedie, T. 2000. Flowering phenology of myrtaceous trees and their relation to climatic, environmental and disturbance variables in northern New South Wales. Austral Ecol. 25: 160-178.
33. Lewontin, R.C., and Krakauer, J. 1973. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics, 74(1): 175-195. PMID:4711903.
34. Li, P., and Adams, W.T. 1989. Range-wide patterns of allozyme variation in Douglas-fir (Pseudotsuga menziesii). Can. J. For. Res. 19(2): 149-161. doi:10.1139/x89-022.
35. Neale, D.B., and Savolainen, O. 2004. Association genetics of complex traits in conifers. Trends Plant Sci. 9(7): 325-330. doi:10.1016/j.tplants.2004.05.006. PMID:15231277.
36. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA. 70(12): 3321-3323. doi:10.1073/ pnas.70.12.3321. PMID:4519626.
37. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89(3): 583-590. PMID:17248844.
38. Nei, M., Tajima, F., and Tateno, Y. 1983. Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J. Mol. Evol. 19(2): 153-170. doi:10.1007/BF02300753. PMID:6571220.
39. Peakall, R., and Smouse, P.E. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes, 6(1): 288-295. doi:10.1111/j.1471-8286.2005. 01155.x.
40. Petit, R.J., Aguinagalde, I., de Beaulieu, J.L., Bittkau, C., Brewer, S., Cheddadi, R., Ennos, R., Fineschi, S., Grivet, D., Lascoux, M., Mohanty, A., Muller-Starck, G.M., Demesure-Musch, B., Palmé, A., Martín, J.P., Rendell, S., and Vendramin, G.G. 2003. Glacial refugia: hotspots but not melting pots of genetic diver- sity. Science, 300(5625): 1563-1565. doi:10.1126/science. 1083264. PMID:12791991.
41. Potts, B.M., and Wiltshire, R.J.E. 1997. Eucalypt genetics and genecology. In Eucalypt ecology: individuals to ecosystems. Edited by J.E. Williams and J.C.Z. Woinarski. Cambridge University Press, Cambridge, UK. pp. 56-91.
42. Pritchard, J.K., Stephens, M., and Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics, 155(2): 945-959. PMID:10835412.
43. Ridley, M. 2004. Species concepts and intraspecific variation. In Evolution. Vol. 1. Blackwell, Oxford, UK. pp. 345-380.
44. Rousset, F. 2008. Genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Mol. Ecol. Res. 8(1): 103-106. doi:10.1111/j.1471-8286.2007.01931.x.
45. Shepherd, M., and Raymond, C.A. 2010. Species delineation and gene flow in the Blackbutts (Genus Eucalyptus Subgenus Eucalyptus Section Pseudophloius). Conserv. Genet. In press.
46. Shepherd, M., Kasem, S., Lee, D., and Henry, R. 2006. Construction of microsatellite linkage maps for Corymbia. Silvae Genet. 55: 228-238.
47. Tamura, K., Dudley, J., Nei, M., and Kumar, S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24(8): 1596-1599. doi:10.1093/molbev/msm092. PMID:17488738.
48. Tozer, M.G., Turner, K., Simpson, C.C., Keith, D.A., Beukers, P., Mackenzie, B., Tindall, D., and Pennay, C. 2006. Native vegetation of south eastern NSW: a revised classification and map for the coast and Eastern tablelands (SCIVI) [online]. Available from http://www.environment.nsw.gov.au/Search/QuickSearch.aspx [accessed 29 May 2009].
49. van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., and Shipley, P. 2004. Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes, 4(3): 535-538. doi:10.1111/j.1471-8286.2004.00684.x.
50. White, T.L., Adams, W.T., and Neale, D.B. 2007. Geographic variation. In Forest genetics. CABI Publishing, Cambridge, Mass., USA. pp. 187-230.