Does a drop in the bucket make a splash? Assessing the impact of antibiotic use on plants

Current Opinion in Microbiology

Volumn 19, Issue 1, 2014, Pages 76-82

  McManus, Patricia S ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; STREPTOMYCIN; ANTIINFECTIVE AGENT;

ANTIBIOTIC RESISTANCE; APPLE; CROPPING SYSTEM; ECOSYSTEM; FIRE BLIGHT; GOVERNMENT REGULATION; HUMAN; MICROBIAL COMMUNITY; NONHUMAN; ORCHARD; PEAR; PLANT DISEASE CONTROL; REVIEW; DRUG EFFECTS; MICROBIOLOGY; PLANT; PLANT DISEASE;

ANTI-BACTERIAL AGENTS; PLANT DISEASES; PLANTS;

EID: 84903844942     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2014.05.013     Document Type: Review

References (44)

1. Allen H.K., Donato J., Wang H.H., Could-Hansen K., Davies J., Handelsman J. Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol 2010, 8:251-259.
2. Cantas L., Shah S.Q.A., Cavaco L.M., Manaia C.M., Walsh F., Popowska M., Garelick H., Bürgmann, Sørum H. A brief multi-disciplinary review on antimicrobial resistance in medicine and its link to the global environmental microbiota. Front Microbiol 2013, 4:1-14.
3. D'Costa V.M., McGrann K.M., Hughes D.W., Wright G.D. Sampling the antibiotic resistome. Science 2006, 311:374-377.
4. Forsberg K.J., Reyes A., Wang B., Selleck E.M., Sommer M.O.A., Dantas G. The shared antibiotic resistome of soil bacteria and human pathogens. Science 2012, 337:1107-1111.
5. Walsh F., Duffy B. The culturable soil antibiotic resistome: a community of multi-drug resistant bacteria. PLOS ONE 2013, 8:e65567.
6. Wright G.D. Antibiotic resistance in the environment: a link to the clinic?. Curr Opin Microbiol 2010, 13:589-594.
7. Abriouel H., Omar N.B., Molinos A.C., López M., Grande J., Martinez-Viedma P., Ortega E., Cañamero M.M., Galvez A. Comparative analysis of genetic diversity and incidence of virulence factors and antibiotic resistance among enterococcal populations from raw fruit and vegetable foods, water and soil, and clinical samples. Int J Food Microbiol 2008, 123:38-49.
8. Marti R., Scott A., Tien Y.-C., Murray R., Sabourin L., Zhang Y., Topp E. Impact of manure fertilization on the abundance of antibiotic-resistant bacteria and frequency of detection of antibiotic resistance genes in soil and on vegetables at harvest. Appl Environ Microbiol 2013, 79:5701-5709.
9. Mayerhofer G., Schwaiger-Nemirova I., Kunh T., Girsch L., Allerberger F. Detecting streptomycin in apples from orchards treated for fire blight. J Antimicrob Chemother 2009, 63:1076-1077.
10. McManus P.S., Stockwell V.O., Sundin G.W., Jones A.L. Antibiotic use in plant agriculture. Annu Rev Phytopathol 2002, 40:443-465.
11. Stockwell V.O., Duffy B. Use of antibiotics in plant agriculture. Rev Sci Tech Off Int Epiz 2012, 31:199-210.
12. Vidaver A.K. Uses of antibiotics in plant agriculture. Clin Infect Dis 2002, 34:S107-S110.
13. Boxall A.B.B., Johnson P., Smith E.J., Sinclair C.J., Stutt E., Levy L.S. Uptake of veterinary medicines from soils into plants. J Agric Food Chem 2006, 54:2288-2297.
14. Heuer H., Schmitt H., Smalla K. Antibiotic resistance gene spread due to manure application on agricultural fields. Curr Opin Microbiol 2011, 14:1-8.
15. Kang D.H., Gupta S., Rosen C., Fritz V., Singh A., Chaner Y., Murray H., Rohwer C. Antibiotic uptake by vegetable crops from manure-applied soils. J Agric Food Chem 2013, 61:9992-10001.
16. Marti R., Yuan-Ching T., Murray R., Scott A., Sabourin L., Topp E. Safely coupling livestock and crop production systems: how rapidly do antibiotic genes dissipate in soil following a commercial application of swine or dairy manure?. Appl Environ Microbiol 2014, 80:3258-3265.
17. Rodríguez C., Lang I., Wang A., Altendorf K., Garcia F., Lipski A. Lettuce for human consumption collected in Costa Rica contains complex communities of culturable oxytetracycline- and gentamicin-resistant bacteria. Appl Environ Microbiol 2006, 72:5870-5876.
18. Pukall R., Tschäpe H., Smalla K. Monitoring the spread of broad host and narrow host range plasmids in soil microorganisms. FEMS Microbiol Ecol 1996, 20:53-66.
19. Sundin G.W., Bender C.L. Dissemination of the strA-strB streptomycin-resistance genes among commensal and pathogenic bacteria from humans, animals, and plants. Mol Ecol 1996, 5:133-143.
20. Rodríguez-Sánchez C., Altendorf K., Smalla K., Lipski A. Spraying of oxytetracycline and gentamicin onto field-grown coriander did not affect the abundance of resistant bacteria, resistance genes, and broad host range plasmids detected in tropical soil bacteria. Biol Fertil Soils 2008, 44:589-596.
21. McGhee G.C., Sundin G.W. Evaluation of kasugamycin for fire blight management, effect on nontarget bacteria, and assessment of kasugamycin resistance potential in Erwinia amylovora. Phytopathology 2011, 101:192-204.
22. Stockwell V.O., Temple T.N., Johnson K.B., Loper J.E. Integrated control of fire blight with antagonists and oxytetracycline. Acta Horticult 2008, 793:383-390.
23. Tolba S., Egan S., Kallifidas D., Wellington E.M.H. Distribution of streptomycin resistance and biosynthesis genes in streptomycetes recovered from different soil sites. FEMS Microbiol Ecol 2002, 42:269-276.
24. van Overbeek L.S., Wellington E.M.H., Egan S., Smalla K., Heuer H., Collard J.-M., Guillaume G., Karagouni A.D., Nikolakopoulou T.L., van Elsas J.D. Prevalence of streptomycin-resistance genes in bacterial populations in European habitats. FEMS Microbiol Ecol 2002, 42:277-288.
25. Donato J.J., Moe L.A., Converse B.J., Smart K.D., Berklein F.C., McManus P.S., Handelsman J. Metagenomic analysis of apple orchard soil reveals antibiotic resistance genes encoding predicted bifunctional proteins. Appl Environ Microbiol 2010, 76:4396-4401.
26. Popowska M., Rzeczycka M., Miernik A., Krawczyk-Balska A., Walsh F., Duffy B. Influence of soil use on prevalence of tetracycline, streptomycin, and erythromycin resistance and associated resistance genes. Antimicrob Agents Chemother 2012, 56:1434-1443.
27. Yashiro E., McManus P.S. Effect of streptomycin treatment on bacterial community structure in the apple phyllosphere. PLOS ONE 2012, 7:e37131.
28. Vanbroekhoven K., Ryngaert A., Bastiaens L., Wattiau P., Vancanneyt M., Swings J., De Mot R., Springael D. Streptomycin as a selective agent to facilitate recovery and isolation of introduced and indigenous Sphingomonas from environmental samples. Environ Microbiol 2004, 6:1123-1136.
29. Yashiro E., Spear R.N., McManus P.S. Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere. J Appl Microbiol 2011, 110:1284-1296.
30. Duffy B., Holliger E., Walsh F. Streptomycin use in apple orchards did not increase abundance of mobile resistance genes. FEMS Microbiol Lett 2014, 350:180-189.
31. Snedecor G.W., Cochran W.G. Statistical Methods 1989, Iowa State University Press. edn 8.
32. Shade A., Klimowicz A.K., Spear R.N., Linske M., Donato J.J., Hogan C.S., McManus P.S., Handelsman J. Streptomycin application has no detectable effect on bacterial community structure in apple orchard soil. Appl Environ Microbiol 2013, 79:6617-6625.
33. Walsh F., Smith D.P., Owens S.M., Frey J.E. Restricted streptomycin use in apple orchards did not adversely alter the soil bacteria communities. Front Microbiol 2014, 4:383.
34. Shade A., McManus P.S., Handelsman J. Unexpected diversity during community succession in the apple flower microbiome. mBio 2013, 4. e00602-12.
35. Halling-Sørensen B., Sengeløv G., Ingerslev F., Jensen L.B. Reduced antimicrobial potencies of oxytetracycline, tylosin, sulfadiazin, streptomycin, ciprofloxacin, and olaquindox due to environmental processes. Arch Environ Contam Toxicol 2003, 44:7-16.
36. Thiele-Bruhn S. Pharmaceutical antibiotic compounds in soil-a review. J Plant Nutr Soil Sci 2003, 166:145-167.
37. Subbiah M., Mitchell S.M., Ullman J.L., Call D.R. Beta-lactams and florfenicol antibiotics remain bioactive in soils while ciprofloxacin, neomycin, and tetracycline are neutralized. Appl Environ Microbiol 2011, 77:7255-7260.
38. Christiano R.S.C., Reilly C.C., Miller W.P., Scherm H. Oxytetracycline dynamics on peach leaves in relation to temperature, sunlight, and simulated rain. Plant Dis 2010, 94:1213-1218.
39. Marshall B.M., Levy S.B. Food animals and antimicrobials: impacts on human health. Clin Microbiol Rev 2011, 24:718.
40. Scherer A., Hans-Rudolf V., Vilel E.M., Frey J., Perreten V. Enhanced antibiotic multi-resistance in nasal and faecal bacteria after agriculture use of streptomycin. Environ Microbiol 2013, 15:297-304.
41. Adaskaveg J.E., Förster H., Wade M.L. Effectiveness of kasugamycin against Erwinia amylovora and its potential use for managing fire blight of pear. Plant Dis 2011, 95:448-454.
42. Psallidas P.G., Tsiantos J. Chemical control of fire blight. Fire Blight: The Disease and its Causative Agent, Erwinia amylovora 2000, 199-234. CABI Publishing. J. Vanneste (Ed.).
43. Zhang M., Powell C.A., Guo Y., Benyon L., Duan Y. Characterization of the microbial community structure in Candidatus Liberibacter asiaticus-infected citrus plants treated with antibiotics in the field. BMC Microbiol 2013, 13:112.
44. Zhang M., Powell C.A., Zhou L., He Z., Stover E., Duan Y. Chemical compounds effective against the citrus Huanglongbing bacterium 'Candidatus Liberibacter asiaticus' in planta. Phytopathology 2011, 101:1097-1103.