메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Effect of streptomycin treatment on bacterial community structure in the apple phyllosphere

Author keywords

[No Author keywords available]

Indexed keywords

STREPTOMYCIN;

EID: 84861325173     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037131     Document Type: Article
Times cited : (49)

References (47)
  • 2
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman, AJ, (2006) New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol 72: 5734-5741.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 3
    • 10444232857 scopus 로고    scopus 로고
    • Occurrence of antibiotic-resistant enterobacteria in agricultural foodstuffs
    • Boehme S, Werner G, Klare I, Reissbrodt R, Witte, W, (2004) Occurrence of antibiotic-resistant enterobacteria in agricultural foodstuffs. Mol Nutr Food Res 48: 533-531.
    • (2004) Mol Nutr Food Res , vol.48 , pp. 531-533
    • Boehme, S.1    Werner, G.2    Klare, I.3    Reissbrodt, R.4    Witte, W.5
  • 4
    • 33745804283 scopus 로고    scopus 로고
    • Characterization of acid-tolerant H-2/CO2-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State
    • Bräuer SL, Yashiro E, Ueno NG, Yavitt JB, Zinder SH, (2006) Characterization of acid-tolerant H-2/CO2-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State. FEMS Microbiol Ecol 57: 206-216.
    • (2006) FEMS Microbiol Ecol , vol.57 , pp. 206-216
    • Bräuer, S.L.1    Yashiro, E.2    Ueno, N.G.3    Yavitt, J.B.4    Zinder, S.H.5
  • 5
    • 0027528606 scopus 로고
    • Nucleotide sequence analysis of a transposon (Tn5393) carrying streptomycin resistance genes in Erwinia amylovora and other Gram-negative bacteria
    • Chiou, C-S, Jones AL, (1993) Nucleotide sequence analysis of a transposon (Tn5393) carrying streptomycin resistance genes in Erwinia amylovora and other Gram-negative bacteria. J Bacteriol 175: 732-740.
    • (1993) J Bacteriol , vol.175 , pp. 732-740
    • Chiou, C.-S.1    Jones, A.L.2
  • 6
    • 80053343576 scopus 로고    scopus 로고
    • Environmental monitoring of antibiotic resistance and impact of streptomycin use on orchard bacterial communities
    • Duffy B, Walsh F, Pelludat C, Holliger E, Oulevet C, et al. (2011) Environmental monitoring of antibiotic resistance and impact of streptomycin use on orchard bacterial communities. Acta Hort 896: 483-488.
    • (2011) Acta Hort , vol.896 , pp. 483-488
    • Duffy, B.1    Walsh, F.2    Pelludat, C.3    Holliger, E.4    Oulevet, C.5
  • 7
    • 72949136694 scopus 로고
    • Chemical residues and additives in foods of plant origin
    • Goodman, RN, (1961) Chemical residues and additives in foods of plant origin. Am J Clin Nutr 9: 269-276.
    • (1961) Am J Clin Nutr , vol.9 , pp. 269-276
    • Goodman, R.N.1
  • 8
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 9
    • 0037927709 scopus 로고    scopus 로고
    • Conversations with the silent majority
    • Handelsman J, Smalla K, (2003) Conversations with the silent majority. Curr Opin Microbiol 6: 271-273.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 271-273
    • Handelsman, J.1    Smalla, K.2
  • 10
    • 0025657408 scopus 로고
    • Population biology and epidemiology of Pseudomonas syringae
    • Hirano SS, Upper CD, (1990) Population biology and epidemiology of Pseudomonas syringae. Annu Rev Phytopathol 28: 155-177.
    • (1990) Annu Rev Phytopathol , vol.28 , pp. 155-177
    • Hirano, S.S.1    Upper, C.D.2
  • 11
    • 0032947591 scopus 로고    scopus 로고
    • Characterization of plasmids that encode streptomycin-resistance in bacterial epiphytes of apple
    • Huang T-C, Burr TJ, (1999) Characterization of plasmids that encode streptomycin-resistance in bacterial epiphytes of apple. J Appl Microbiol 86: 741-751.
    • (1999) J Appl Microbiol , vol.86 , pp. 741-751
    • Huang, T.-C.1    Burr, T.J.2
  • 13
    • 33947269742 scopus 로고    scopus 로고
    • Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
    • Lozupone CA, Hamady M, Kelley ST, Knight R, (2007) Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 73: 1576-1585.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1576-1585
    • Lozupone, C.A.1    Hamady, M.2    Kelley, S.T.3    Knight, R.4
  • 14
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig W, et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 16
    • 0036604125 scopus 로고    scopus 로고
    • Antimicrobial use and resistance in animals. Clin Infect Dis
    • McEwen SA, Fedorka-Cray PJ, (2002) Antimicrobial use and resistance in animals. Clin Infect Dis 34(Suppl. 3): S93-S106.
    • (2002) , vol.34 , Issue.SUPPL. 3
    • McEwen, S.A.1    Fedorka-Cray, P.J.2
  • 17
    • 79952269491 scopus 로고    scopus 로고
    • Evaluation of kasugamycin for fire blight management, effect on nontarget bacteria, and assessment of kasugamycin resistance potential in Erwinia amylovora
    • McGhee GC, Sundin, GW, (2011) Evaluation of kasugamycin for fire blight management, effect on nontarget bacteria, and assessment of kasugamycin resistance potential in Erwinia amylovora. Phytopathology 101: 192-204.
    • (2011) Phytopathology , vol.101 , pp. 192-204
    • McGhee, G.C.1    Sundin, G.W.2
  • 19
    • 0026069220 scopus 로고
    • Homologous streptomycin resistance gene present among diverse gram-negative bacteria in New York State apple orchards
    • Norelli JL, Burr TJ, LoCicero AM, Gilbert MT, Katz BH, (1991) Homologous streptomycin resistance gene present among diverse gram-negative bacteria in New York State apple orchards. Appl Environ Microbiol 57: 486-491.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 486-491
    • Norelli, J.L.1    Burr, T.J.2    LoCicero, A.M.3    Gilbert, M.T.4    Katz, B.H.5
  • 20
    • 0036604099 scopus 로고    scopus 로고
    • Emergence, spread, and environmental effect of antimicrobial resistance: How use of an antimicrobial anywhere can increase resistance to any antimicrobial anywhere else. Clin Infect Dis
    • O'Brien TF, (2002) Emergence, spread, and environmental effect of antimicrobial resistance: How use of an antimicrobial anywhere can increase resistance to any antimicrobial anywhere else. Clin Infect Dis 34(Suppl. 3): S78-S84.
    • (2002) , vol.34 , Issue.SUPPL. 3
    • O'Brien, T.F.1
  • 21
    • 70449597572 scopus 로고    scopus 로고
    • Impact of organic and conventional management on the phyllosphere microbial ecology of an apple crop
    • Ottesen AR, White JR, Skaltsas DN, Newell MJ, Walsh CS, (2009) Impact of organic and conventional management on the phyllosphere microbial ecology of an apple crop. J Food Protect 72: 2321-2325.
    • (2009) J Food Protect , vol.72 , pp. 2321-2325
    • Ottesen, A.R.1    White, J.R.2    Skaltsas, D.N.3    Newell, M.J.4    Walsh, C.S.5
  • 22
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, NR, (1997) A molecular view of microbial diversity and the biosphere. Science 276: 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 23
    • 1442349126 scopus 로고    scopus 로고
    • Tetracycline and streptomycin resistance genes, transposons, and plasmids in Salmonella enterica isolates from animals in Italy
    • Pazzella C, Ricci A, DiGiannatale E, Luzzi I, Carattoli A, (2004) Tetracycline and streptomycin resistance genes, transposons, and plasmids in Salmonella enterica isolates from animals in Italy. Antimicrob Agents Chemother 48: 903-908.
    • (2004) Antimicrob Agents Chemother , vol.48 , pp. 903-908
    • Pazzella, C.1    Ricci, A.2    DiGiannatale, E.3    Luzzi, I.4    Carattoli, A.5
  • 24
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: Phylogenetic model averaging
    • Posada D, (2008) jModelTest: Phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 25
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, et al. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5
  • 26
    • 0343408482 scopus 로고    scopus 로고
    • Monitoring the spread of broad host and narrow host range plasmids in soil microcosms
    • Pukall R, Tschäpe H, Smalla K, (1996) Monitoring the spread of broad host and narrow host range plasmids in soil microcosms. FEMS Microbiol Ecol 20: 53-66.
    • (1996) FEMS Microbiol Ecol , vol.20 , pp. 53-66
    • Pukall, R.1    Tschäpe, H.2    Smalla, K.3
  • 28
    • 67649947810 scopus 로고    scopus 로고
    • Plant agricultural streptomycin formulations do not carry antibiotic resistance genes
    • Rezzonico F, Stockwell VO, Duffy B, (2009) Plant agricultural streptomycin formulations do not carry antibiotic resistance genes. Antimicrob Agents Chemother 53: 3173-3177.
    • (2009) Antimicrob Agents Chemother , vol.53 , pp. 3173-3177
    • Rezzonico, F.1    Stockwell, V.O.2    Duffy, B.3
  • 29
    • 67649223259 scopus 로고    scopus 로고
    • Bacterial succession on the leaf surface: A novel system for studying successional dynamics
    • Redford AJ, Fierer, N, (2009) Bacterial succession on the leaf surface: A novel system for studying successional dynamics. Microb Ecol 58: 189-198.
    • (2009) Microb Ecol , vol.58 , pp. 189-198
    • Redford, A.J.1    Fierer, N.2
  • 30
    • 33748800232 scopus 로고    scopus 로고
    • Lettuce for human consumption collected in Costa Rica contains complex communities of culturable oxytetracycline- and gentamicin-resistant bacteria
    • Rodriguez C, Lang L, Wang A, Altendorf K, Garcia F, et al. (2006) Lettuce for human consumption collected in Costa Rica contains complex communities of culturable oxytetracycline- and gentamicin-resistant bacteria. Appl Environ Microbiol 72: 5870-5876.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5870-5876
    • Rodriguez, C.1    Lang, L.2    Wang, A.3    Altendorf, K.4    Garcia, F.5
  • 31
    • 43149098288 scopus 로고    scopus 로고
    • Spraying of oxytetracycline and gentamicin onto field-grown coriander did not affect the abundance of resistant bacteria, resistance genes, and broad host range plasmids detected in tropical soil bacteria
    • Rodríguez-Sánchez C, Altendorf K, Smalla K, Lipski A, (2007) Spraying of oxytetracycline and gentamicin onto field-grown coriander did not affect the abundance of resistant bacteria, resistance genes, and broad host range plasmids detected in tropical soil bacteria. Biol Fertil Soils 44: 589-596.
    • (2007) Biol Fertil Soils , vol.44 , pp. 589-596
    • Rodríguez-Sánchez, C.1    Altendorf, K.2    Smalla, K.3    Lipski, A.4
  • 32
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann, M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 33
    • 0032748069 scopus 로고    scopus 로고
    • Distribution of tetracycline resistance genes and transposons among phylloplane bacteria in Michigan apple orchards
    • Schnabel EL, Jones AL, (1999) Distribution of tetracycline resistance genes and transposons among phylloplane bacteria in Michigan apple orchards. Appl Environ Microbiol 65: 4898-4907.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4898-4907
    • Schnabel, E.L.1    Jones, A.L.2
  • 34
    • 0000461225 scopus 로고
    • Streptomycin-resistant epiphytic bacteria and homologous DNA for streptomycin resistance in Michigan apple orchards
    • Sobiczewski P, Chiou C-S, Jones AL, (1991) Streptomycin-resistant epiphytic bacteria and homologous DNA for streptomycin resistance in Michigan apple orchards. Plant Dis 75: 1110-13.
    • (1991) Plant Dis , vol.75 , pp. 1110-1113
    • Sobiczewski, P.1    Chiou, C.-S.2    Jones, A.L.3
  • 35
    • 0036631510 scopus 로고    scopus 로고
    • Distinct lineages of the strA-strB streptomycin-resistance genes in clinical and environmental bacteria
    • Sundin GW, (2002) Distinct lineages of the strA-strB streptomycin-resistance genes in clinical and environmental bacteria. Curr Microbiol 45: 63-69.
    • (2002) Curr Microbiol , vol.45 , pp. 63-69
    • Sundin, G.W.1
  • 36
    • 0027457239 scopus 로고
    • Ecological and genetic analysis of copper and streptomycin resistance in Pseudomonas syringae pv. syringae
    • Sundin GW, Bender CL, (1993) Ecological and genetic analysis of copper and streptomycin resistance in Pseudomonas syringae pv. syringae. Appl Environ Microbiol 59: 1018-1024.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1018-1024
    • Sundin, G.W.1    Bender, C.L.2
  • 37
    • 0029090742 scopus 로고
    • Expression of the strA-strB streptomycin resistance genes in Pseudomonas syringae and Xanthomonas campestris and characterization of IS6100 in Xanthomonas campestris
    • Sundin GW, Bender CL, (1995) Expression of the strA-strB streptomycin resistance genes in Pseudomonas syringae and Xanthomonas campestris and characterization of IS6100 in Xanthomonas campestris. Appl Environ Microbiol 61: 2891-2897.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 2891-2897
    • Sundin, G.W.1    Bender, C.L.2
  • 38
    • 0030087721 scopus 로고    scopus 로고
    • Dissemination of the strA-strB streptomycin-resistance genes among commensal and pathogenic bacteria from humans, animals, and plants
    • Sundin GW, Bender CL, (1996) Dissemination of the strA-strB streptomycin-resistance genes among commensal and pathogenic bacteria from humans, animals, and plants. Mol Ecol 5: 133-143.
    • (1996) Mol Ecol , vol.5 , pp. 133-143
    • Sundin, G.W.1    Bender, C.L.2
  • 39
    • 0028972722 scopus 로고
    • Distribution of the streptomycin resistance transposon Tn5393 among phylloplane and soil bacteria from managed agricultural habitats
    • Sundin GW, Monks DE, Bender CL, (1995) Distribution of the streptomycin resistance transposon Tn5393 among phylloplane and soil bacteria from managed agricultural habitats. Can J Microbiol 41: 792-799.
    • (1995) Can J Microbiol , vol.41 , pp. 792-799
    • Sundin, G.W.1    Monks, D.E.2    Bender, C.L.3
  • 40
    • 0036849706 scopus 로고    scopus 로고
    • Distribution of streptomycin resistance and biosynthesis genes in streptomycetes recovered from different soil sites
    • Tolba S, Egan S, Kallifidas D, Wellington EMH, (2002) Distribution of streptomycin resistance and biosynthesis genes in streptomycetes recovered from different soil sites. FEMS Microbiol Ecol 42: 269-276.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 269-276
    • Tolba, S.1    Egan, S.2    Kallifidas, D.3    Wellington, E.M.H.4
  • 41
    • 6944242787 scopus 로고    scopus 로고
    • Streptomycin as a selective agent to facilitate recovery and isolation of introduced and indigenous Sphingomonas from environmental samples
    • Vanbroekhoven K, Ryngaert A, Bastiaens L, Wattiau P, Vancanneyt M, et al. (2004) Streptomycin as a selective agent to facilitate recovery and isolation of introduced and indigenous Sphingomonas from environmental samples. Environ Microbiol 6: 123-1136.
    • (2004) Environ Microbiol , vol.6 , pp. 123-1136
    • Vanbroekhoven, K.1    Ryngaert, A.2    Bastiaens, L.3    Wattiau, P.4    Vancanneyt, M.5
  • 42
    • 18744366054 scopus 로고    scopus 로고
    • Prevalence of streptomycin-resistance genes in bacterial populations in European habitats
    • van Overbeek LS, Wellington EMH, Egan S, Smalla K, Heuer H, et al. (2002) Prevalence of streptomycin-resistance genes in bacterial populations in European habitats. FEMS Microbiol Ecol 42: 277-288.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 277-288
    • van Overbeek, L.S.1    Wellington, E.M.H.2    Egan, S.3    Smalla, K.4    Heuer, H.5
  • 44
    • 82955194486 scopus 로고    scopus 로고
    • Antibiotic resistance: How much do we know and where do we go from here?
    • Wang HH, Schaffner DW, (2011) Antibiotic resistance: How much do we know and where do we go from here? Appl Environ Microbiol 77: 7093-7095.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7093-7095
    • Wang, H.H.1    Schaffner, D.W.2
  • 45
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR, (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 46
    • 84861305414 scopus 로고    scopus 로고
    • Assessment of bacteria from apple leaves by culture-dependent and culture-independent methods
    • Yashiro E, Spear R, Clinton-Cirocco K, McManus P, (2008) Assessment of bacteria from apple leaves by culture-dependent and culture-independent methods. Phytopathology 98: S177.
    • (2008) Phytopathology , vol.98
    • Yashiro, E.1    Spear, R.2    Clinton-Cirocco, K.3    McManus, P.4
  • 47
    • 79953742137 scopus 로고    scopus 로고
    • Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere
    • Yashiro E, Spear RN, McManus PS, (2011) Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere. J Appl Microbiol 110: 1284-1296.
    • (2011) J Appl Microbiol , vol.110 , pp. 1284-1296
    • Yashiro, E.1    Spear, R.N.2    McManus, P.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.