-
1
-
-
2942514591
-
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
-
Adalsteinsson D., McMillen D., Elston T.C. Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks. BMC Bioinformatics 2004, 5:24.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 24
-
-
Adalsteinsson, D.1
McMillen, D.2
Elston, T.C.3
-
2
-
-
0032582487
-
Second site suppressor mutations of a GTPase-deficient G-protein alpha-subunit. Selective inhibition of Gbeta gamma-mediated signaling
-
Apanovitch D.M., Iiri T., Karasawa T., Bourne H.R., Dohlman H.G. Second site suppressor mutations of a GTPase-deficient G-protein alpha-subunit. Selective inhibition of Gbeta gamma-mediated signaling. J.Biol. Chem. 1998, 273:28597-28602.
-
(1998)
J.Biol. Chem.
, vol.273
, pp. 28597-28602
-
-
Apanovitch, D.M.1
Iiri, T.2
Karasawa, T.3
Bourne, H.R.4
Dohlman, H.G.5
-
3
-
-
33747174575
-
Microbial cell individuality and the underlying sources of heterogeneity
-
Avery S.V. Microbial cell individuality and the underlying sources of heterogeneity. Nat. Rev. Microbiol. 2006, 4:577-587.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 577-587
-
-
Avery, S.V.1
-
4
-
-
33748590520
-
DEP-domain-mediated regulation of GPCR signaling responses
-
Ballon D.R., Flanary P.L., Gladue D.P., Konopka J.B., Dohlman H.G., Thorner J. DEP-domain-mediated regulation of GPCR signaling responses. Cell 2006, 126:1079-1093.
-
(2006)
Cell
, vol.126
, pp. 1079-1093
-
-
Ballon, D.R.1
Flanary, P.L.2
Gladue, D.P.3
Konopka, J.B.4
Dohlman, H.G.5
Thorner, J.6
-
5
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
Becskei A., Serrano L. Engineering stability in gene networks by autoregulation. Nature 2000, 405:590-593.
-
(2000)
Nature
, vol.405
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
6
-
-
25144450143
-
Contributions of low molecule number and chromosomal positioning to stochastic gene expression
-
Becskei A., Kaufmann B.B., van Oudenaarden A. Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nat. Genet. 2005, 37:937-944.
-
(2005)
Nat. Genet.
, vol.37
, pp. 937-944
-
-
Becskei, A.1
Kaufmann, B.B.2
van Oudenaarden, A.3
-
7
-
-
0032579440
-
Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications
-
Brachmann C.B., Davies A., Cost G.J., Caputo E., Li J., Hieter P., Boeke J.D. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 1998, 14:115-132.
-
(1998)
Yeast
, vol.14
, pp. 115-132
-
-
Brachmann, C.B.1
Davies, A.2
Cost, G.J.3
Caputo, E.4
Li, J.5
Hieter, P.6
Boeke, J.D.7
-
8
-
-
32944462411
-
Genome-scale analysis reveals Sst2 as the principal regulator of mating pheromone signaling in the yeast Saccharomyces cerevisiae
-
Chasse S.A., Flanary P., Parnell S.C., Hao N., Cha J.Y., Siderovski D.P., Dohlman H.G. Genome-scale analysis reveals Sst2 as the principal regulator of mating pheromone signaling in the yeast Saccharomyces cerevisiae. Eukaryot. Cell 2006, 5:330-346.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 330-346
-
-
Chasse, S.A.1
Flanary, P.2
Parnell, S.C.3
Hao, N.4
Cha, J.Y.5
Siderovski, D.P.6
Dohlman, H.G.7
-
9
-
-
26944476331
-
Regulated cell-to-cell variation in a cell-fate decision system
-
Colman-Lerner A., Gordon A., Serra E., Chin T., Resnekov O., Endy D., Pesce C.G., Brent R. Regulated cell-to-cell variation in a cell-fate decision system. Nature 2005, 437:699-706.
-
(2005)
Nature
, vol.437
, pp. 699-706
-
-
Colman-Lerner, A.1
Gordon, A.2
Serra, E.3
Chin, T.4
Resnekov, O.5
Endy, D.6
Pesce, C.G.7
Brent, R.8
-
10
-
-
0032489381
-
Selective uncoupling of RGS action by a single point mutation in the G protein alpha-subunit
-
DiBello P.R., Garrison T.R., Apanovitch D.M., Hoffman G., Shuey D.J., Mason K., Cockett M.I., Dohlman H.G. Selective uncoupling of RGS action by a single point mutation in the G protein alpha-subunit. J.Biol. Chem. 1998, 273:5780-5784.
-
(1998)
J.Biol. Chem.
, vol.273
, pp. 5780-5784
-
-
DiBello, P.R.1
Garrison, T.R.2
Apanovitch, D.M.3
Hoffman, G.4
Shuey, D.J.5
Mason, K.6
Cockett, M.I.7
Dohlman, H.G.8
-
11
-
-
0034923514
-
Regulation of G protein-initiated signal transduction in yeast: paradigms and principles
-
Dohlman H.G., Thorner J.W. Regulation of G protein-initiated signal transduction in yeast: paradigms and principles. Annu. Rev. Biochem. 2001, 70:703-754.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 703-754
-
-
Dohlman, H.G.1
Thorner, J.W.2
-
12
-
-
0029767982
-
Sst2, a negative regulator of pheromone signaling in the yeast Saccharomyces cerevisiae: expression, localization, and genetic interaction and physical association with Gpa1 (the G-protein alpha subunit)
-
Dohlman H.G., Song J., Ma D., Courchesne W.E., Thorner J. Sst2, a negative regulator of pheromone signaling in the yeast Saccharomyces cerevisiae: expression, localization, and genetic interaction and physical association with Gpa1 (the G-protein alpha subunit). Mol. Cell. Biol. 1996, 16:5194-5209.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 5194-5209
-
-
Dohlman, H.G.1
Song, J.2
Ma, D.3
Courchesne, W.E.4
Thorner, J.5
-
13
-
-
33846108256
-
Noise in transcription negative feedback loops: simulation and experimental analysis
-
Dublanche Y., Michalodimitrakis K., Kümmerer N., Foglierini M., Serrano L. Noise in transcription negative feedback loops: simulation and experimental analysis. Mol. Syst. Biol. 2006, 2:41.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 41
-
-
Dublanche, Y.1
Michalodimitrakis, K.2
Kümmerer, N.3
Foglierini, M.4
Serrano, L.5
-
14
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz M.B., Levine A.J., Siggia E.D., Swain P.S. Stochastic gene expression in a single cell. Science 2002, 297:1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
15
-
-
0032498622
-
Pheromone-regulated genes required for yeast mating differentiation
-
Erdman S., Lin L., Malczynski M., Snyder M. Pheromone-regulated genes required for yeast mating differentiation. J.Cell Biol. 1998, 140:461-483.
-
(1998)
J.Cell Biol.
, vol.140
, pp. 461-483
-
-
Erdman, S.1
Lin, L.2
Malczynski, M.3
Snyder, M.4
-
16
-
-
16644373292
-
Noise minimization in eukaryotic gene expression
-
Fraser H.B., Hirsh A.E., Giaever G., Kumm J., Eisen M.B. Noise minimization in eukaryotic gene expression. PLoS Biol. 2004, 2:e137.
-
(2004)
PLoS Biol.
, vol.2
-
-
Fraser, H.B.1
Hirsh, A.E.2
Giaever, G.3
Kumm, J.4
Eisen, M.B.5
-
17
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S., Huh W.K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Global analysis of protein expression in yeast. Nature 2003, 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
18
-
-
33947365852
-
RGS4 modulates serotonin signaling inprefrontal cortex and links to serotonin dysfunction in a rat model of schizophrenia
-
Gu Z., Jiang Q., Yan Z. RGS4 modulates serotonin signaling inprefrontal cortex and links to serotonin dysfunction in a rat model of schizophrenia. Mol. Pharmacol. 2007, 71:1030-1039.
-
(2007)
Mol. Pharmacol.
, vol.71
, pp. 1030-1039
-
-
Gu, Z.1
Jiang, Q.2
Yan, Z.3
-
19
-
-
34047259513
-
A systems-biology analysis of feedback inhibition in the Sho1 osmotic-stress-response pathway
-
Hao N., Behar M., Parnell S.C., Torres M.P., Borchers C.H., Elston T.C., Dohlman H.G. A systems-biology analysis of feedback inhibition in the Sho1 osmotic-stress-response pathway. Curr. Biol. 2007, 17:659-667.
-
(2007)
Curr. Biol.
, vol.17
, pp. 659-667
-
-
Hao, N.1
Behar, M.2
Parnell, S.C.3
Torres, M.P.4
Borchers, C.H.5
Elston, T.C.6
Dohlman, H.G.7
-
20
-
-
44449091966
-
Regulation of cell signaling dynamics by the protein kinase-scaffold Ste5
-
Hao N., Nayak S., Behar M., Shanks R.H., Nagiec M.J., Errede B., Hasty J., Elston T.C., Dohlman H.G. Regulation of cell signaling dynamics by the protein kinase-scaffold Ste5. Mol. Cell 2008, 30:649-656.
-
(2008)
Mol. Cell
, vol.30
, pp. 649-656
-
-
Hao, N.1
Nayak, S.2
Behar, M.3
Shanks, R.H.4
Nagiec, M.J.5
Errede, B.6
Hasty, J.7
Elston, T.C.8
Dohlman, H.G.9
-
22
-
-
0025598073
-
Courtship in S. cerevisiae: both cell types choose mating partners by responding to the strongest pheromone signal
-
Jackson C.L., Hartwell L.H. Courtship in S. cerevisiae: both cell types choose mating partners by responding to the strongest pheromone signal. Cell 1990, 63:1039-1051.
-
(1990)
Cell
, vol.63
, pp. 1039-1051
-
-
Jackson, C.L.1
Hartwell, L.H.2
-
23
-
-
25444489027
-
Phenotypic diversity, population growth, and information in fluctuating environments
-
Kussell E., Leibler S. Phenotypic diversity, population growth, and information in fluctuating environments. Science 2005, 309:2075-2078.
-
(2005)
Science
, vol.309
, pp. 2075-2078
-
-
Kussell, E.1
Leibler, S.2
-
24
-
-
0033559974
-
Distribution of minichromosomes in individual Escherichia coli cells: implications for replication control
-
Løbner-Olesen A. Distribution of minichromosomes in individual Escherichia coli cells: implications for replication control. EMBO J. 1999, 18:1712-1721.
-
(1999)
EMBO J.
, vol.18
, pp. 1712-1721
-
-
Løbner-Olesen, A.1
-
25
-
-
0031782969
-
Cell polarity and morphogenesis in budding yeast
-
Madden K., Snyder M. Cell polarity and morphogenesis in budding yeast. Annu. Rev. Microbiol. 1998, 52:687-744.
-
(1998)
Annu. Rev. Microbiol.
, vol.52
, pp. 687-744
-
-
Madden, K.1
Snyder, M.2
-
26
-
-
34347260600
-
Living with noisy genes: how cells function reliably with inherent variability in gene expression
-
Maheshri N., O'Shea E.K. Living with noisy genes: how cells function reliably with inherent variability in gene expression. Annu. Rev. Biophys. Biomol. Struct. 2007, 36:413-434.
-
(2007)
Annu. Rev. Biophys. Biomol. Struct.
, vol.36
, pp. 413-434
-
-
Maheshri, N.1
O'Shea, E.K.2
-
27
-
-
0033083733
-
It's a noisy business! Genetic regulation at the nanomolar scale
-
McAdams H.H., Arkin A. It's a noisy business! Genetic regulation at the nanomolar scale. Trends Genet. 1999, 15:65-69.
-
(1999)
Trends Genet.
, vol.15
, pp. 65-69
-
-
McAdams, H.H.1
Arkin, A.2
-
28
-
-
77957579883
-
Coordinate control of gene expression noise and interchromosomal interactions in a MAP kinase pathway
-
McCullagh E., Seshan A., El-Samad H., Madhani H.D. Coordinate control of gene expression noise and interchromosomal interactions in a MAP kinase pathway. Nat. Cell Biol. 2010, 12:954-962.
-
(2010)
Nat. Cell Biol.
, vol.12
, pp. 954-962
-
-
McCullagh, E.1
Seshan, A.2
El-Samad, H.3
Madhani, H.D.4
-
29
-
-
0033801741
-
Role of Cdc42p in pheromone-stimulated signal transduction in Saccharomyces cerevisiae
-
Moskow J.J., Gladfelter A.S., Lamson R.E., Pryciak P.M., Lew D.J. Role of Cdc42p in pheromone-stimulated signal transduction in Saccharomyces cerevisiae. Mol. Cell. Biol. 2000, 20:7559-7571.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 7559-7571
-
-
Moskow, J.J.1
Gladfelter, A.S.2
Lamson, R.E.3
Pryciak, P.M.4
Lew, D.J.5
-
31
-
-
33745220278
-
Single-cell proteomic analysis ofS. cerevisiae reveals the architecture of biological noise
-
Newman J.R., Ghaemmaghami S., Ihmels J., Breslow D.K., Noble M., DeRisi J.L., Weissman J.S. Single-cell proteomic analysis ofS. cerevisiae reveals the architecture of biological noise. Nature 2006, 441:840-846.
-
(2006)
Nature
, vol.441
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
DeRisi, J.L.6
Weissman, J.S.7
-
32
-
-
0034002965
-
Polarization of cell growth in yeast. I. Establishment and maintenance of polarity states
-
Pruyne D., Bretscher A. Polarization of cell growth in yeast. I. Establishment and maintenance of polarity states. J.Cell Sci. 2000, 113:365-375.
-
(2000)
J.Cell Sci.
, vol.113
, pp. 365-375
-
-
Pruyne, D.1
Bretscher, A.2
-
33
-
-
84874765320
-
Encoding and decoding cellular information through signaling dynamics
-
Purvis J.E., Lahav G. Encoding and decoding cellular information through signaling dynamics. Cell 2013, 152:945-956.
-
(2013)
Cell
, vol.152
, pp. 945-956
-
-
Purvis, J.E.1
Lahav, G.2
-
34
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser J.M., O'Shea E.K. Control of stochasticity in eukaryotic gene expression. Science 2004, 304:1811-1814.
-
(2004)
Science
, vol.304
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
35
-
-
25444468618
-
Noise in gene expression: origins, consequences, and control
-
Raser J.M., O'Shea E.K. Noise in gene expression: origins, consequences, and control. Science 2005, 309:2010-2013.
-
(2005)
Science
, vol.309
, pp. 2010-2013
-
-
Raser, J.M.1
O'Shea, E.K.2
-
36
-
-
84879919574
-
Dissecting genealogy and cell cycle as sources of cell-to-cell variability in MAPK signaling using high-throughput lineage tracking
-
Ricicova M., Hamidi M., Quiring A., Niemistö A., Emberly E., Hansen C.L. Dissecting genealogy and cell cycle as sources of cell-to-cell variability in MAPK signaling using high-throughput lineage tracking. Proc. Natl. Acad. Sci. USA 2013, 110:11403-11408.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 11403-11408
-
-
Ricicova, M.1
Hamidi, M.2
Quiring, A.3
Niemistö, A.4
Emberly, E.5
Hansen, C.L.6
-
37
-
-
33845301393
-
Identification of small-molecule inhibitors of RGS4 using a high-throughput flow cytometry protein interaction assay
-
Roman D.L., Talbot J.N., Roof R.A., Sunahara R.K., Traynor J.R., Neubig R.R. Identification of small-molecule inhibitors of RGS4 using a high-throughput flow cytometry protein interaction assay. Mol. Pharmacol. 2007, 71:169-175.
-
(2007)
Mol. Pharmacol.
, vol.71
, pp. 169-175
-
-
Roman, D.L.1
Talbot, J.N.2
Roof, R.A.3
Sunahara, R.K.4
Traynor, J.R.5
Neubig, R.R.6
-
38
-
-
0027218647
-
Polarization of yeast cells in spatial gradients of alpha mating factor
-
Segall J.E. Polarization of yeast cells in spatial gradients of alpha mating factor. Proc. Natl. Acad. Sci. USA 1993, 90:8332-8336.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8332-8336
-
-
Segall, J.E.1
-
39
-
-
0037341631
-
Spontaneous receptor-independent heterotrimeric G-protein signalling in an RGS mutant
-
Siekhaus D.E., Drubin D.G. Spontaneous receptor-independent heterotrimeric G-protein signalling in an RGS mutant. Nat. Cell Biol. 2003, 5:231-235.
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 231-235
-
-
Siekhaus, D.E.1
Drubin, D.G.2
-
40
-
-
0025971103
-
Assay of yeast mating reaction
-
Sprague G.F. Assay of yeast mating reaction. Methods Enzymol. 1991, 194:77-93.
-
(1991)
Methods Enzymol.
, vol.194
, pp. 77-93
-
-
Sprague, G.F.1
-
42
-
-
2942555282
-
Stochastic gene expression in fluctuating environments
-
Thattai M., van Oudenaarden A. Stochastic gene expression in fluctuating environments. Genetics 2004, 167:523-530.
-
(2004)
Genetics
, vol.167
, pp. 523-530
-
-
Thattai, M.1
van Oudenaarden, A.2
-
43
-
-
32844454497
-
Origins of extrinsic variability in eukaryotic gene expression
-
Volfson D., Marciniak J., Blake W.J., Ostroff N., Tsimring L.S., Hasty J. Origins of extrinsic variability in eukaryotic gene expression. Nature 2006, 439:861-864.
-
(2006)
Nature
, vol.439
, pp. 861-864
-
-
Volfson, D.1
Marciniak, J.2
Blake, W.J.3
Ostroff, N.4
Tsimring, L.S.5
Hasty, J.6
|