메뉴 건너뛰기




Volumn 175, Issue , 2014, Pages 144-149

Validation of reference genes for RT-qPCR normalization in Iris. lactea var. chinensis leaves under different experimental conditions

Author keywords

Abiotic stress; Iris. lactea var. chinensis; Reference genes; RT qPCR

Indexed keywords

DICOTYLEDON; EXPLORATION; GENE EXPRESSION; GENETIC ANALYSIS; LEAF; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; REAL TIME;

EID: 84903435191     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2014.06.011     Document Type: Article
Times cited : (17)

References (43)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., Ørntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Ørntoft, T.F.3
  • 2
    • 22444444066 scopus 로고    scopus 로고
    • Enzyme co-localization in the pea leaf cytosol: 3-P-glycerate kinase, glyceraldehyde-3-P dehydrogenase, triose-P isomerase and aldolase
    • Anderson L.E., Carol A.A. Enzyme co-localization in the pea leaf cytosol: 3-P-glycerate kinase, glyceraldehyde-3-P dehydrogenase, triose-P isomerase and aldolase. Plant Sci. 2005, 169:620-628.
    • (2005) Plant Sci. , vol.169 , pp. 620-628
    • Anderson, L.E.1    Carol, A.A.2
  • 3
    • 77954588784 scopus 로고    scopus 로고
    • Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data
    • Artico S., Nardeli S.M., Brilhante O., Grossi-de-Sa M.F., Alves-Ferreira M. Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data. BMC Plant Biol. 2010, 10:49.
    • (2010) BMC Plant Biol. , vol.10 , pp. 49
    • Artico, S.1    Nardeli, S.M.2    Brilhante, O.3    Grossi-de-Sa, M.F.4    Alves-Ferreira, M.5
  • 4
    • 84903483549 scopus 로고    scopus 로고
    • Studies on compatibility of interspecific hybridization between Iris lactea Pall. var. chinensis Koidz. and I. sanguinea Hormen
    • Bi X., Lou Q., Zheng Y. Studies on compatibility of interspecific hybridization between Iris lactea Pall. var. chinensis Koidz. and I. sanguinea Hormen. Acta Hortic. Sin. 2011, 5:977-984.
    • (2011) Acta Hortic. Sin. , vol.5 , pp. 977-984
    • Bi, X.1    Lou, Q.2    Zheng, Y.3
  • 5
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    • Bustin S.A. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J. Mol. Endocrinol. 2000, 25:169-193.
    • (2000) J. Mol. Endocrinol. , vol.25 , pp. 169-193
    • Bustin, S.A.1
  • 7
    • 85027928183 scopus 로고    scopus 로고
    • Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions
    • Chen L., Zhong H.Y., Kuang J.F., Li J.G., Lu W.J., Chen J.Y. Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions. Planta 2011, 234:377-390.
    • (2011) Planta , vol.234 , pp. 377-390
    • Chen, L.1    Zhong, H.Y.2    Kuang, J.F.3    Li, J.G.4    Lu, W.J.5    Chen, J.Y.6
  • 9
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T., Stitt M., Altmann T., Udvardi M.K., Scheible W.-R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 2005, 139:5-17.
    • (2005) Plant Physiol. , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.-R.5
  • 10
    • 84874422608 scopus 로고    scopus 로고
    • Identification of reference genes for expression studies using quantitative RT-PCR in spathe tissue of Anthurium andraeanum (Hort.)
    • Gopaulchan D., Lennon A.M., Umaharan P. Identification of reference genes for expression studies using quantitative RT-PCR in spathe tissue of Anthurium andraeanum (Hort.). Sci. Hortic.-Amsterdam 2013, 153:1-7.
    • (2013) Sci. Hortic.-Amsterdam , vol.153 , pp. 1-7
    • Gopaulchan, D.1    Lennon, A.M.2    Umaharan, P.3
  • 11
    • 84856016873 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR in Chrysanthemum subjected to biotic and abiotic stress
    • Gu C., Chen S., Liu Z., Shan H., Luo H., Guan Z., Chen F. Reference gene selection for quantitative real-time PCR in Chrysanthemum subjected to biotic and abiotic stress. Mol. Biotechnol. 2011, 49:192-197.
    • (2011) Mol. Biotechnol. , vol.49 , pp. 192-197
    • Gu, C.1    Chen, S.2    Liu, Z.3    Shan, H.4    Luo, H.5    Guan, Z.6    Chen, F.7
  • 13
    • 53249153473 scopus 로고    scopus 로고
    • Tolerance and accumulation of lead by species of Iris L
    • Han Y.L., Huang S.Z., Gu J.G., Qiu S., Chen J.M. Tolerance and accumulation of lead by species of Iris L. Ecotoxicology 2008, 17:853-859.
    • (2008) Ecotoxicology , vol.17 , pp. 853-859
    • Han, Y.L.1    Huang, S.Z.2    Gu, J.G.3    Qiu, S.4    Chen, J.M.5
  • 14
    • 0001864081 scopus 로고
    • The water-culture method for growing plants without soil
    • California Agricultural Experiment Station
    • Hoagland D.R., Arnon D.I. The water-culture method for growing plants without soil. Circular 1950, 347:1-32. California Agricultural Experiment Station.
    • (1950) Circular , vol.347 , pp. 1-32
    • Hoagland, D.R.1    Arnon, D.I.2
  • 15
    • 57049155443 scopus 로고    scopus 로고
    • Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR
    • Hong S.-Y., Seo P.J., Yang M.-S., Xiang F., Park C.-M. Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR. BMC Plant Biol. 2008, 8:112.
    • (2008) BMC Plant Biol. , vol.8 , pp. 112
    • Hong, S.-Y.1    Seo, P.J.2    Yang, M.-S.3    Xiang, F.4    Park, C.-M.5
  • 16
    • 70449337110 scopus 로고    scopus 로고
    • Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR
    • Hu R., Fan C., Li H., Zhang Q., Fu Y.-F. Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR. BMC Mol. Biol. 2009, 10:93.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 93
    • Hu, R.1    Fan, C.2    Li, H.3    Zhang, Q.4    Fu, Y.-F.5
  • 17
    • 77950946491 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.)
    • Huis R., Hawkins S., Neutelings G. Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.). BMC Plant Biol. 2010, 10:71.
    • (2010) BMC Plant Biol. , vol.10 , pp. 71
    • Huis, R.1    Hawkins, S.2    Neutelings, G.3
  • 18
  • 19
    • 84874670036 scopus 로고    scopus 로고
    • Reference gene selection for qPCR analysis in cineraria developing flowers
    • Jin X., Fu J., Dai S., Sun Y., Hong Y. Reference gene selection for qPCR analysis in cineraria developing flowers. Sci. Hortic.-Amsterdam 2013, 153:64-70.
    • (2013) Sci. Hortic.-Amsterdam , vol.153 , pp. 64-70
    • Jin, X.1    Fu, J.2    Dai, S.3    Sun, Y.4    Hong, Y.5
  • 21
    • 84884205112 scopus 로고    scopus 로고
    • Defining reference genes for qPCR normalization to study biotic and abiotic stress responses in Vigna mungo
    • Kundu A., Patel A., Pal A. Defining reference genes for qPCR normalization to study biotic and abiotic stress responses in Vigna mungo. Plant Cell Rep. 2013, 32:1647-1658.
    • (2013) Plant Cell Rep. , vol.32 , pp. 1647-1658
    • Kundu, A.1    Patel, A.2    Pal, A.3
  • 22
    • 61849089336 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
    • Løvdal T., Lillo C. Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress. Anal. Biochem. 2009, 387:238-242.
    • (2009) Anal. Biochem. , vol.387 , pp. 238-242
    • Løvdal, T.1    Lillo, C.2
  • 23
    • 77649341683 scopus 로고    scopus 로고
    • Reference gene selection for qPCR analysis during somatic embryogenesis in longan tree
    • Lin Y.L., Lai Z.X. Reference gene selection for qPCR analysis during somatic embryogenesis in longan tree. Plant Sci. 2010, 178:359-365.
    • (2010) Plant Sci. , vol.178 , pp. 359-365
    • Lin, Y.L.1    Lai, Z.X.2
  • 24
    • 84858705769 scopus 로고    scopus 로고
    • Heterologous expression of a Nelumbo nucifera phytochelatin synthase gene enhances cadmium tolerance in Arabidopsis thaliana
    • Liu Z., Gu C., Chen F., Yang D., Wu K., Chen S., Jiang J., Zhang Z. Heterologous expression of a Nelumbo nucifera phytochelatin synthase gene enhances cadmium tolerance in Arabidopsis thaliana. Appl. Biochem. Biotechnol. 2012, 166:722-734.
    • (2012) Appl. Biochem. Biotechnol. , vol.166 , pp. 722-734
    • Liu, Z.1    Gu, C.2    Chen, F.3    Yang, D.4    Wu, K.5    Chen, S.6    Jiang, J.7    Zhang, Z.8
  • 26
    • 84878031556 scopus 로고    scopus 로고
    • Identification and validation of reference genes for gene expression studies in postharvest rose flower (Rosa hybrida)
    • Meng Y., Li N., Tian J., Gao J., Zhang C. Identification and validation of reference genes for gene expression studies in postharvest rose flower (Rosa hybrida). Sci. Hortic.-Amsterdam 2013, 158:16-21.
    • (2013) Sci. Hortic.-Amsterdam , vol.158 , pp. 16-21
    • Meng, Y.1    Li, N.2    Tian, J.3    Gao, J.4    Zhang, C.5
  • 27
    • 80052265445 scopus 로고    scopus 로고
    • Identification of suitable reference genes for studying gene expression in cucumber plants subjected to abiotic stress and growth regulators
    • Migocka M., Papierniak A. Identification of suitable reference genes for studying gene expression in cucumber plants subjected to abiotic stress and growth regulators. Mol. Breed. 2011, 28:343-357.
    • (2011) Mol. Breed. , vol.28 , pp. 343-357
    • Migocka, M.1    Papierniak, A.2
  • 28
    • 34948893564 scopus 로고    scopus 로고
    • Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
    • Nygard A.-B., Jørgensen C.B., Cirera S., Fredholm M. Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. BMC Mol. Biol. 2007, 8:67.
    • (2007) BMC Mol. Biol. , vol.8 , pp. 67
    • Nygard, A.-B.1    Jørgensen, C.B.2    Cirera, S.3    Fredholm, M.4
  • 29
  • 30
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C., Ruijter J., Deprez R., Moorman A. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci. Lett. 2003, 339:62-66.
    • (2003) Neurosci. Lett. , vol.339 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.2    Deprez, R.3    Moorman, A.4
  • 31
    • 42149126123 scopus 로고    scopus 로고
    • Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations
    • Remans T., Smeets K., Opdenakker K., Mathijsen D., Vangronsveld J., Cuypers A. Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. Planta 2008, 227:1343-1349.
    • (2008) Planta , vol.227 , pp. 1343-1349
    • Remans, T.1    Smeets, K.2    Opdenakker, K.3    Mathijsen, D.4    Vangronsveld, J.5    Cuypers, A.6
  • 32
    • 84870293063 scopus 로고    scopus 로고
    • Reference gene selection for qPCR gene expression analysis of rust-infected wheat
    • Scholtz J.J., Visser B. Reference gene selection for qPCR gene expression analysis of rust-infected wheat. Physiol. Mol. Plant Pathol. 2013, 81:22-25.
    • (2013) Physiol. Mol. Plant Pathol. , vol.81 , pp. 22-25
    • Scholtz, J.J.1    Visser, B.2
  • 33
    • 84878760746 scopus 로고    scopus 로고
    • Relationship between the leaf tissue characteristic and drought resistance of Iris lactea Pall. var. chinensis (Fisch.)
    • Shi X., Zhang G., Meng L., Mao P., Liu Z. Relationship between the leaf tissue characteristic and drought resistance of Iris lactea Pall. var. chinensis (Fisch.). B. Bot. Res. 2008, 28:584-588.
    • (2008) B. Bot. Res. , vol.28 , pp. 584-588
    • Shi, X.1    Zhang, G.2    Meng, L.3    Mao, P.4    Liu, Z.5
  • 34
    • 0034807289 scopus 로고    scopus 로고
    • Control genes in quantitative molecular biological techniques: the variability of invariance
    • Stürzenbaum S.R., Kille P. Control genes in quantitative molecular biological techniques: the variability of invariance. Comp. Biochem. Physiol. B: Biochem. Mol. Biol. 2001, 130:281-289.
    • (2001) Comp. Biochem. Physiol. B: Biochem. Mol. Biol. , vol.130 , pp. 281-289
    • Stürzenbaum, S.R.1    Kille, P.2
  • 36
    • 84897011733 scopus 로고    scopus 로고
    • Effects of salt stress on the growth, photosynthetic pigments and structure of two halophytes, Iris halophila and I. lactea var. chinensis
    • Tong H., Gu C., Yuan H., Huang C. Effects of salt stress on the growth, photosynthetic pigments and structure of two halophytes, Iris halophila and I. lactea var. chinensis. Fresenius Environ. Bull. 2014, 23:84-90.
    • (2014) Fresenius Environ. Bull. , vol.23 , pp. 84-90
    • Tong, H.1    Gu, C.2    Yuan, H.3    Huang, C.4
  • 37
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • (research0034)
    • Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3. (research0034).
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 38
    • 77049088223 scopus 로고    scopus 로고
    • Selection of appropriate reference genes for gene expression studies by quantitative real-time polymerase chain reaction in cucumber
    • Wan H., Zhao Z., Qian C., Sui Y., Malik A.A., Chen J. Selection of appropriate reference genes for gene expression studies by quantitative real-time polymerase chain reaction in cucumber. Anal. Biochem. 2010, 399:257-261.
    • (2010) Anal. Biochem. , vol.399 , pp. 257-261
    • Wan, H.1    Zhao, Z.2    Qian, C.3    Sui, Y.4    Malik, A.A.5    Chen, J.6
  • 39
    • 84903455838 scopus 로고    scopus 로고
    • Effect of drought stress on physiological indexes in seedlings of Iris
    • Wang B., Dong R. Effect of drought stress on physiological indexes in seedlings of Iris. North. Hortic. 2012, 16:72-75.
    • (2012) North. Hortic. , vol.16 , pp. 72-75
    • Wang, B.1    Dong, R.2
  • 40
    • 84884207668 scopus 로고    scopus 로고
    • Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)
    • Wang M., Wang Q., Zhang B. Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.). Gene 2013, 530:44-50.
    • (2013) Gene , vol.530 , pp. 44-50
    • Wang, M.1    Wang, Q.2    Zhang, B.3
  • 41
    • 34248575089 scopus 로고    scopus 로고
    • Effect of Cu stress on Cu accumulation and other nutrient element absorption of Iris pseudacaorus and I. lactea var. chinensis
    • Zhang K., Tong H., Huang S., Yuan H. Effect of Cu stress on Cu accumulation and other nutrient element absorption of Iris pseudacaorus and I. lactea var. chinensis. J. Plant Res. Environ. 2007, 16:18-22.
    • (2007) J. Plant Res. Environ. , vol.16 , pp. 18-22
    • Zhang, K.1    Tong, H.2    Huang, S.3    Yuan, H.4
  • 42
    • 79952698987 scopus 로고    scopus 로고
    • Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions
    • Zhong H.-Y., Chen J.-W., Li C.-Q., Chen L., Wu J.-Y., Chen J.-Y., Lu W.-J., Li J.-G. Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions. Plant Cell Rep. 2011, 30:641-653.
    • (2011) Plant Cell Rep. , vol.30 , pp. 641-653
    • Zhong, H.-Y.1    Chen, J.-W.2    Li, C.-Q.3    Chen, L.4    Wu, J.-Y.5    Chen, J.-Y.6    Lu, W.-J.7    Li, J.-G.8
  • 43
    • 84871752794 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in Caragana intermedia under different abiotic stress conditions
    • Zhu J., Zhang L., Li W., Han S., Yang W., Qi L. Reference gene selection for quantitative real-time PCR normalization in Caragana intermedia under different abiotic stress conditions. PLoS One 2013, 8:e53196.
    • (2013) PLoS One , vol.8
    • Zhu, J.1    Zhang, L.2    Li, W.3    Han, S.4    Yang, W.5    Qi, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.