메뉴 건너뛰기




Volumn 288, Issue 11, 2013, Pages 639-649

The choice of reference gene set for assessing gene expression in barley (Hordeum vulgare L.) under low temperature and drought stress

Author keywords

Crowns; Drought; Leaves; Low temperature; Normalization; Real time RT PCR

Indexed keywords

ADENOSYLMETHIONINE DECARBOXYLASE; CYCLOPHILIN; ELONGATION FACTOR 1ALPHA; HEAT SHOCK PROTEIN 70; HEAT SHOCK PROTEIN 90;

EID: 84889879261     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-013-0774-4     Document Type: Article
Times cited : (56)

References (34)
  • 1
    • 57749113512 scopus 로고    scopus 로고
    • The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing della proteins via its effect on gibberellin metabolism
    • 18757556 1:CAS:528:DC%2BD1cXht1Clsb3O 10.1105/tpc.108.058941
    • Achard P, Gong F, Cheminant S, Alioua M, Hedden P, Genschik P (2008) The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism. Plant Cell 20:2117-2129
    • (2008) Plant Cell , vol.20 , pp. 2117-2129
    • Achard, P.1    Gong, F.2    Cheminant, S.3    Alioua, M.4    Hedden, P.5    Genschik, P.6
  • 2
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • 15289330 1:CAS:528:DC%2BD2cXmtF2mtbg%3D 10.1158/0008-5472.CAN-04-0496
    • Andersen CL, Jensen JL, Orntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64:5245-5250
    • (2004) Cancer Res , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 3
    • 0842307342 scopus 로고    scopus 로고
    • The CesA gene family of barley. Quantitative analysis of transcripts reveals two groups of co-expressed genes
    • 14701917 1:CAS:528:DC%2BD2cXhtVagu74%3D 10.1104/pp.103.032904
    • Burton RA, Shirley NJ, King BJ, Harvey AJ, Fincher GB (2004) The CesA gene family of barley. Quantitative analysis of transcripts reveals two groups of co-expressed genes. Plant Physiol 134:224-236
    • (2004) Plant Physiol , vol.134 , pp. 224-236
    • Burton, R.A.1    Shirley, N.J.2    King, B.J.3    Harvey, A.J.4    Fincher, G.B.5
  • 4
    • 0031662843 scopus 로고    scopus 로고
    • Molecular assessment of tumour stage and disease recurrence using PCR-based assays
    • 9791862 1:CAS:528:DyaK1cXmsVKmu7s%3D 10.1016/S1357-4310(98)01324-0
    • Bustin SA, Dorudi S (1998) Molecular assessment of tumour stage and disease recurrence using PCR-based assays. Mol Med Today 4:389-396
    • (1998) Mol Med Today , vol.4 , pp. 389-396
    • Bustin, S.A.1    Dorudi, S.2
  • 5
    • 80052872902 scopus 로고    scopus 로고
    • BnHO1, a haem oxygenase-1 gene from Brassica napus, is required for salinity and osmotic stress-induced lateral root formation
    • 21673093 1:CAS:528:DC%2BC3MXhtFKisbzE 10.1093/jxb/err190
    • Cao ZY, Geng BB, Xu S, Xuan W, Nie L, Shen WB, Liang YC, Guan RZ (2011) BnHO1, a haem oxygenase-1 gene from Brassica napus, is required for salinity and osmotic stress-induced lateral root formation. J Exp Bot 62:4675-4689
    • (2011) J Exp Bot , vol.62 , pp. 4675-4689
    • Cao, Z.Y.1    Geng, B.B.2    Xu, S.3    Xuan, W.4    Nie, L.5    Shen, W.B.6    Liang, Y.C.7    Guan, R.Z.8
  • 6
    • 44849085483 scopus 로고    scopus 로고
    • Exercise induced stress in horses: Selection of the most stable reference genes for quantitative RT-PCR normalization
    • 18489742 10.1186/1471-2199-9-49
    • Cappelli K, Felicetti M, Capomaccio S, Spinsanti G, Silvestrelli M, Supplizi AV (2008) Exercise induced stress in horses: selection of the most stable reference genes for quantitative RT-PCR normalization. BMC Mol Biol 9:49
    • (2008) BMC Mol Biol , vol.9 , pp. 49
    • Cappelli, K.1    Felicetti, M.2    Capomaccio, S.3    Spinsanti, G.4    Silvestrelli, M.5    Supplizi, A.V.6
  • 7
    • 84858866950 scopus 로고    scopus 로고
    • Validation of reference genes for gene expression studies in peanut by quantitative real-time RT-PCR
    • 22203160 1:CAS:528:DC%2BC38Xht1WksbY%3D 10.1007/s00438-011-0665-5
    • Chi X, Hu R, Yang Q, Zhang X, Pan L, Chen N, Chen M, Yang Z, Wang T, He Y, Yu S (2012) Validation of reference genes for gene expression studies in peanut by quantitative real-time RT-PCR. Mol Genet Genomics 287:167-176
    • (2012) Mol Genet Genomics , vol.287 , pp. 167-176
    • Chi, X.1    Hu, R.2    Yang, Q.3    Zhang, X.4    Pan, L.5    Chen, N.6    Chen, M.7    Yang, Z.8    Wang, T.9    He, Y.10    Yu, S.11
  • 8
    • 1942475192 scopus 로고    scopus 로고
    • Real-time RT-PCR profiling of over 1,400 Arabidopsis transcription factors: Unprecedented sensitivity reveals novel root- and shoot-specific genes
    • 15078338 1:CAS:528:DC%2BD2cXkt1KksLg%3D 10.1111/j.1365-313X.2004.02051.x
    • Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK (2004) Real-time RT-PCR profiling of over 1,400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J 38:366-379
    • (2004) Plant J , vol.38 , pp. 366-379
    • Czechowski, T.1    Bari, R.P.2    Stitt, M.3    Scheible, W.R.4    Udvardi, M.K.5
  • 9
    • 79955940628 scopus 로고    scopus 로고
    • Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data
    • 21589908 1:CAS:528:DC%2BC3MXmtlKluro%3D 10.1371/journal.pone.0019434
    • Demidenko NV, Logacheva MD, Penin AA (2011) Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data. PLoS One 6:e19434
    • (2011) PLoS One , vol.6 , pp. 19434
    • Demidenko, N.V.1    Logacheva, M.D.2    Penin, A.A.3
  • 10
    • 33847321126 scopus 로고    scopus 로고
    • A combined strategy of "in silico" transcriptome analysis and web search engine optimization allows an agile identification of reference genes suitable for normalization in gene expression studies
    • 17143578 1:CAS:528:DC%2BD2sXitFKmsL0%3D 10.1007/s11103-006-9116-9
    • Faccioli P, Ciceri GP, Provero P, Stanca AM, Morcia C, Terzi V (2007) A combined strategy of "in silico" transcriptome analysis and web search engine optimization allows an agile identification of reference genes suitable for normalization in gene expression studies. Plant Mol Biol 63:679-688
    • (2007) Plant Mol Biol , vol.63 , pp. 679-688
    • Faccioli, P.1    Ciceri, G.P.2    Provero, P.3    Stanca, A.M.4    Morcia, C.5    Terzi, V.6
  • 11
    • 84889883404 scopus 로고    scopus 로고
    • FAO Food and Agriculture Organization of the United Nations, Land Resources last accessed 19th June 2013
    • FAO Food and Agriculture Organization of the United Nations, Land Resources. http://www.fao.org/economic/ess/ess-home/en/#.UcF1tY3E-Tp. last accessed 19th June 2013
  • 12
    • 57049155443 scopus 로고    scopus 로고
    • Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR
    • 18992143 10.1186/1471-2229-8-112
    • Hong SY, Seo PJ, Yang MS, Xiang F, Park CM (2008) Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR. BMC Plant Biol 8:112
    • (2008) BMC Plant Biol , vol.8 , pp. 112
    • Hong, S.Y.1    Seo, P.J.2    Yang, M.S.3    Xiang, F.4    Park, C.M.5
  • 13
    • 79958152743 scopus 로고    scopus 로고
    • Transcriptional responses of winter barley to cold indicate nucleosome remodelling as a specific feature of crown tissues
    • 21360135 10.1007/s10142-011-0213-8
    • Janská A, Aprile A, Zámečník J, Cattivelli L, Ovesná J (2011) Transcriptional responses of winter barley to cold indicate nucleosome remodelling as a specific feature of crown tissues. Funct Integr Genomics 11:307-325
    • (2011) Funct Integr Genomics , vol.11 , pp. 307-325
    • Janská, A.1    Aprile, A.2    Zámečník, J.3    Cattivelli, L.4    Ovesná, J.5
  • 14
    • 61649093336 scopus 로고    scopus 로고
    • Real-time PCR quantification and live-cell imaging of endophytic colonization of barley (Hordeum vulgare) roots by Fusarium equiseti and Pochonia chlamydosporia
    • 19170898 10.1111/j.1469-8137.2008.02743.x
    • Maciá-Vicente JG, Jansson HB, Talbot NJ, Lopez-Llorca LV (2009) Real-time PCR quantification and live-cell imaging of endophytic colonization of barley (Hordeum vulgare) roots by Fusarium equiseti and Pochonia chlamydosporia. New Phytol 182:213-228
    • (2009) New Phytol , vol.182 , pp. 213-228
    • Maciá-Vicente, J.G.1    Jansson, H.B.2    Talbot, N.J.3    Lopez-Llorca, L.V.4
  • 15
    • 54949145747 scopus 로고    scopus 로고
    • Evaluation of reference genes for quantitative RT-PCR in Lolium perenne
    • 1:CAS:528:DC%2BD1cXht1Omt7vJ 10.2135/cropsci2007.10.0597
    • Martin RC, Hollenbeck VG, Dombrowski JE (2008) Evaluation of reference genes for quantitative RT-PCR in Lolium perenne. Crop Sci 48:1881-1887
    • (2008) Crop Sci , vol.48 , pp. 1881-1887
    • Martin, R.C.1    Hollenbeck, V.G.2    Dombrowski, J.E.3
  • 16
    • 80052265445 scopus 로고    scopus 로고
    • Identification of suitable reference genes for studying gene expression in cucumber plants subjected to abiotic stress and growth regulators
    • 10.1007/s11032-010-9487-0
    • Migocka M, Papierniak A (2011) Identification of suitable reference genes for studying gene expression in cucumber plants subjected to abiotic stress and growth regulators. Mol Breeding 28:343-357
    • (2011) Mol Breeding , vol.28 , pp. 343-357
    • Migocka, M.1    Papierniak, A.2
  • 17
    • 33845358954 scopus 로고    scopus 로고
    • Relationships between an Italian strawberry ecotype and its ancestor using RAPD markers
    • 1:CAS:528:DC%2BD2sXhs1Wnsr4%3D 10.1007/s10722-005-1405-7
    • Milella L, Saluzzi D, Lapelosa M, Martelli G, Greco I (2006) Relationships between an Italian strawberry ecotype and its ancestor using RAPD markers. Genet Res Crop Evol 53:1715-1720
    • (2006) Genet Res Crop Evol , vol.53 , pp. 1715-1720
    • Milella, L.1    Saluzzi, D.2    Lapelosa, M.3    Martelli, G.4    Greco, I.5
  • 18
    • 79952993786 scopus 로고    scopus 로고
    • Total phenolic content, RAPDs, AFLPs and morphological traits for the analysis of variability in Smallanthus sonchifolius
    • 1:CAS:528:DC%2BC3MXjsFylt7k%3D 10.1007/s10722-010-9597-x
    • Milella L, Martelli G, Salava J, Fernandez E, Ovesná J, Greco I (2011) Total phenolic content, RAPDs, AFLPs and morphological traits for the analysis of variability in Smallanthus sonchifolius. Genet Res Crop Evol 58:545-551
    • (2011) Genet Res Crop Evol , vol.58 , pp. 545-551
    • Milella, L.1    Martelli, G.2    Salava, J.3    Fernandez, E.4    Ovesná, J.5    Greco, I.6
  • 19
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • 16188960 1:CAS:528:DC%2BD2MXhtFCjt7jJ 10.1093/jxb/eri285
    • Nicot N, Hausman J-F, Hoffmann L, Evers D (2005) Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J Exp Bot 56:2907-2914
    • (2005) J Exp Bot , vol.56 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.-F.2    Hoffmann, L.3    Evers, D.4
  • 20
    • 84864492310 scopus 로고    scopus 로고
    • Validation of the b-amy1 transcription profiling assay and selection of reference genes suited for a RT-qpcr assay in developing barley caryopsis
    • 22860024 1:CAS:528:DC%2BC38XhtFGgsbbN 10.1371/journal.pone.0041886
    • Ovesna J, Kucera L, Vaculova K, Strymplova K, Svobodova I, Milella L (2012) Validation of the b-amy1 transcription profiling assay and selection of reference genes suited for a RT-qpcr assay in developing barley caryopsis. PLoS One 7:e41886
    • (2012) PLoS One , vol.7 , pp. 41886
    • Ovesna, J.1    Kucera, L.2    Vaculova, K.3    Strymplova, K.4    Svobodova, I.5    Milella, L.6
  • 21
    • 79960411257 scopus 로고    scopus 로고
    • Diversity of S-alk(en)yl cysteine sulphoxide content within a putative core collection of garlic (Allium sativum L.) and its association with morphological and genetic background assessed by AFLP
    • 10.1016/j.scienta.2011.06.009
    • Ovesná J, Kučera L, Horníčková J, Svobodová L, Stavělíková H, Velíšek J, Milella L (2011) Diversity of S-alk(en)yl cysteine sulphoxide content within a putative core collection of garlic (Allium sativum L.) and its association with morphological and genetic background assessed by AFLP. Scie Hortic 129:541-547
    • (2011) Scie Hortic , vol.129 , pp. 541-547
    • Ovesná, J.1    Kučera, L.2    Horníčková, J.3    Svobodová, L.4    Stavělíková, H.5    Velíšek, J.6    Milella, L.7
  • 22
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • 15127793 1:CAS:528:DC%2BD2cXhvF2mtLk%3D 10.1023/B:BILE.0000019559.84305. 47
    • Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnol Lett 26:509-515
    • (2004) Biotechnol Lett , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 23
    • 84865516609 scopus 로고    scopus 로고
    • Internal standards for quantitative RT-PCR studies of gene expression under drought treatment in barley (Hordeum vulgare L.): The effects of developmental stage and leaf age
    • 1:CAS:528:DC%2BC3sXpvFeqsr0%3D 10.1007/s11738-012-0967-1
    • Rapacz M, Stepien A, Skorupa K (2012) Internal standards for quantitative RT-PCR studies of gene expression under drought treatment in barley (Hordeum vulgare L.): the effects of developmental stage and leaf age. Acta Physiol Plant 34:1723-1733
    • (2012) Acta Physiol Plant , vol.34 , pp. 1723-1733
    • Rapacz, M.1    Stepien, A.2    Skorupa, K.3
  • 24
    • 0034694128 scopus 로고    scopus 로고
    • Effect of experimental treatment on housekeeping gene expression: Validation by real-time, quantitative RT-PCR
    • 11086195 1:CAS:528:DC%2BD3cXot12rt78%3D 10.1016/S0165-022X(00)00129-9
    • Schmittgen TD, Zakrajsek BA (2000) Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Meth 46:69-81
    • (2000) J Biochem Biophys Meth , vol.46 , pp. 69-81
    • Schmittgen, T.D.1    Zakrajsek, B.A.2
  • 25
    • 84857006809 scopus 로고    scopus 로고
    • Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64
    • 22102215 1:CAS:528:DC%2BC38Xmtl2i 10.1007/s00438-011-0659-3
    • Sharoni AM, Nuruzzaman M, Satoh K, Moumeni A, Attia K, Venuprasad R, Serraj R, Kumar A, Leung H, Islam AKMR, Kikuchi S (2012) Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64. Mol Genet Genomics 287:1-19
    • (2012) Mol Genet Genomics , vol.287 , pp. 1-19
    • Sharoni, A.M.1    Nuruzzaman, M.2    Satoh, K.3    Moumeni, A.4    Attia, K.5    Venuprasad, R.6    Serraj, R.7    Kumar, A.8    Leung, H.9    Islam, A.10    Kikuchi, S.11
  • 26
    • 68749118527 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizantha
    • 19573233 10.1186/1471-2229-9-84
    • Silveira ED, Alves-Ferreira M, Guimaraes LA, da Silva FR, Carneiro VTD (2009) Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizantha. BMC Plant Biol 9:84
    • (2009) BMC Plant Biol , vol.9 , pp. 84
    • Silveira, E.D.1    Alves-Ferreira, M.2    Guimaraes, L.A.3    Da Silva, F.R.4    Carneiro, V.T.D.5
  • 27
    • 77951157022 scopus 로고    scopus 로고
    • A quantitative real-time PCR method for monitoring Clostridium botulinum type A in rice samples
    • 20377957 1:CAS:528:DC%2BC3cXlslemu7w%3D
    • Takahashi H, Takakura C, Kimura B (2010) A quantitative real-time PCR method for monitoring Clostridium botulinum type A in rice samples. J Food Prot 73:688-694
    • (2010) J Food Prot , vol.73 , pp. 688-694
    • Takahashi, H.1    Takakura, C.2    Kimura, B.3
  • 28
    • 77954564638 scopus 로고    scopus 로고
    • Identification and validation of reference genes for gene expression studies in water buffalo
    • 22444257 1:CAS:528:DC%2BC3cXlsVOgt7g%3D 10.1017/S1751731110000042
    • Terzi V, Morcia C, Spini M, Tudisco R, Cutrignelli MI, Infascellia F, Stanca AM, Faccioli P (2010) Identification and validation of reference genes for gene expression studies in water buffalo. Animal 4:853-860
    • (2010) Animal , vol.4 , pp. 853-860
    • Terzi, V.1    Morcia, C.2    Spini, M.3    Tudisco, R.4    Cutrignelli, M.I.5    Infascellia, F.6    Stanca, A.M.7    Faccioli, P.8
  • 30
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034.1-research0034.11
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3(7): research0034.1-research0034.11
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 31
    • 17044385046 scopus 로고    scopus 로고
    • Recent advances in engineering plant tolerance to abiotic stress: Achievements and limitations
    • 15831376 1:CAS:528:DC%2BD2MXjtlamu74%3D 10.1016/j.copbio.2005.02.001
    • Vinocur B, Altman A (2005) Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations. Curr Opin Biotechol 16:123-132
    • (2005) Curr Opin Biotechnol. , vol.16 , pp. 123-132
    • Vinocur, B.1    Altman, A.2
  • 32
    • 24944534978 scopus 로고    scopus 로고
    • Real-time PCR for mRNA quantitation
    • 10.2144/05391BF01
    • Wong ML, Medrano JF (2005) Real-time PCR for mRNA quantitation. Biotechniques 39:1-11
    • (2005) Biotechniques , vol.39 , pp. 1-11
    • Wong, M.L.1    Medrano, J.F.2
  • 33
    • 77249119389 scopus 로고    scopus 로고
    • Validation of suitable internal control genes for expression studies in aging
    • 20038437 1:CAS:528:DC%2BC3cXitVKjt70%3D 10.1016/j.mad.2009.12.005
    • Zampieri M, Ciccarone F, Guastafierro T, Bacalini MG, Calabrese R et al (2010) Validation of suitable internal control genes for expression studies in aging. Mech Ageing Dev 131:89-95
    • (2010) Mech Ageing Dev , vol.131 , pp. 89-95
    • Zampieri, M.1    Ciccarone, F.2    Guastafierro, T.3    Bacalini, M.G.4    Calabrese, R.5
  • 34
    • 79952698987 scopus 로고    scopus 로고
    • Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions
    • 21301853 1:CAS:528:DC%2BC3MXjtFagtL0%3D 10.1007/s00299-010-0992-8
    • Zhong H-Y, Chen J-W, Li C-Q, Chen L, Wu J-Y, Chen JY, Lu WJ, Li JG (2011) Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions. Plant Cell Rep 30:641-653
    • (2011) Plant Cell Rep , vol.30 , pp. 641-653
    • Zhong, H.-Y.1    Chen, J.-W.2    Li, C.-Q.3    Chen, L.4    Wu, J.-Y.5    Chen, J.Y.6    Lu, W.J.7    Li, J.G.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.