Effects of crowding on the stability of a surface-tethered biopolymer: An experimental study of folding in a highly crowded regime

Journal of the American Chemical Society

Volumn 136, Issue 25, 2014, Pages 8923-8927

  Watkins, Herschel M ^a   Simon, Anna J ^a   Ricci, Francesco ^b   Plaxco, Kevin W ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF ROME TOR VERGATA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTROSTATICS; MOLECULES;

CROWDING EFFECTS; DESTABILIZING EFFECT; ELECTROSTATIC EFFECT; ELECTROSTATIC REPULSION; HIGH PACKING DENSITY; HOMOGENEOUS SOLUTIONS; MACROSCOPIC SURFACES; STABILIZING EFFECTS;

BIOMOLECULES;

BIOPOLYMER; DNA;

ARTICLE; BASE PAIRING; CIRCULAR DICHROISM; DNA STRAND; GEOMETRY; HYBRIDIZATION; MOLECULAR CROWDING; OXIDATION REDUCTION POTENTIAL; REDUCTION; SURFACE PROPERTY; CHEMISTRY; THERMODYNAMICS;

BIOPOLYMERS; DNA; SURFACE PROPERTIES; THERMODYNAMICS;

EID: 84903291570     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja411486g     Document Type: Article

References (34)

1. Watkins, H. M.; Vallée-Bélisle, A.; Ricci, F.; Makarov, D. E.; Plaxco, K. W. J. Am. Chem. Soc. 2012, 134, 2120
2. Dill, K. A. Biochemistry 1990, 29, 7133
3. Abu-Lail, N. I.; Camesano, T. A. Biomacromolecules 2003, 4, 1000
4. Zhuang, Z.; Jewett, A. I.; Kuttimalai, S.; Bellesia, G.; Gnanakaran, S.; Shea, J.-E. Biophys. J. 2011, 100, 1306
5. Ricci, F.; Lai, R. Y.; Heeger, A. J.; Plaxco, K. W.; Sumner, J. J. Langmuir 2007, 23, 6827
6. Sarkar, M.; Li, C.; Pielak, G. J. Biophys. Rev. 2013, 5, 187
7. Zhou, H.-X. J. Mol. Recognit. 2004, 17, 368
8. Friedel, M.; Sheeler, D. J.; Shea, J.-E. J. Chem. Phys. 2003, 118, 8106
9. Mittal, J.; Best, R. B. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 20233
10. Kinjo, A. R.; Takada, S. Phys. Rev. E 2002, 66, 051902
11. Knowles, D. B.; LaCroix, A. S.; Deines, N. F.; Shkel, I.; Record, M. T. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12699
12. Wang, Y.; Sarkar, M.; Smith, A. E.; Krois, A. S.; Pielak, G. J. J. Am. Chem. Soc. 2012, 134, 16614
13. Harada, R.; Tochio, N.; Kigawa, T.; Sugita, Y.; Feig, M. J. Am. Chem. Soc. 2013, 135, 3696
14. Nakano, S.; Miyoshi, D.; Sugimoto, N. Chem. Rev. 2014, 114, 2733
15. Pegram, L. M.; Wendorff, T.; Erdmann, R.; Shkel, I.; Bellissimo, D.; Felitsky, D. J.; Record, M. T. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 7716
16. Ren, Y.; Gao, J.; Xu, J.; Ge, W.; Li, J. Particuology 2012, 10, 105
17. Qin, S.; Zhou, H.-X. Biophys. J. 2009, 97, 12
18. Mittal, J.; Best, R. B. Biophys. J. 2010, 98, 315
19. White, R. J.; Phares, N.; Lubin, A. A.; Xiao, Y.; Plaxco, K. W. Langmuir 2008, 24, 10513
20. Chatake, T.; Sazaki, G.; Kikkou, T.; Fujiwara, S.; Ishikawa, T.; Matsumoto, O.; Morimoto, Y. Cryst. Growth Des. 2010, 10, 1090
21. Deoxyribonucleic acid sodium salt from salmon testes (Sigma-Aldrich); http://www.sigmaaldrich.com/catalog/product/sigma/d1626?lang=en®ion=US (accessed Mar 16, 2013).
22. Kastantin, M.; Tirrell, M. Macromolecules 2011, 44, 4977
23. Elcock, A. H. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 2340
24. Esteban Fernández de ávila, B.; Watkins, H. M.; Pingarrón, J. M.; Plaxco, K. W.; Palleschi, G.; Ricci, F. Anal. Chem. 2013, 85, 6593
25. Rant, U.; Arinaga, K.; Fujita, S.; Yokoyama, N.; Abstreiter, G.; Tornow, M. Langmuir 2004, 20, 10086
26. Pace, C. N. In Methods in Enzymology; Hirs, C. H. W.; Timasheff, S. N., Eds.; Academic Press: New York, 1986; Vol. 131, pp 266-280.
27. Vallée-Bélisle, A.; Ricci, F.; Plaxco, K. W. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 13802
28. Aguilar, X.; Weise, C. F.; Sparrman, T.; Wolf-Watz, M.; Wittung-Stafshede, P. Biochemistry 2011, 50, 3034
29. Miklos, A. C.; Sarkar, M.; Wang, Y.; Pieak, G. J. J. Am. Chem. Soc. 2011, 133, 7116
30. Tokuriki, N.; Kinjo, M.; Negi, S.; Hoshino, M.; Goto, Y.; Urabe, I.; Yomo, T. Protein Sci. 2004, 13, 125
31. Qu, Y.; Bolen, D. Biophys. Chem. 2002, 101-102, 155
32. Myers, J. K.; Pace, C. N.; Scholtz, J. M. Protein Sci. 1995, 4, 2138
33. Ghaemmaghami, S.; Oas, T. G. Nat. Struct. Mol. Biol. 2001, 8, 879
34. Steel, A. B.; Herne, T. M.; Tarlov, M. J. Anal. Chem. 1998, 70, 4670