Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum

Plant Journal

Volumn 79, Issue 1, 2014, Pages 162-172

  Grativol, Clícia ^a   Regulski, Michael ^b   Bertalan, Marcelo ^c   McCombie, W Richard ^b   Da Silva, Felipe Rodrigues ^d   Zerlotini Neto, Adhemar ^d   Vicentini, Renato ^e   Farinelli, Laurent ^f   Hemerly, Adriana Silva ^a   Martienssen, Robert A ^b   Ferreira, Paulo Cavalcanti Gomes ^a  

^a Cidade Universitária   (Brazil)

^b Simons Center for Quantitative Biology   (United States)

^c Institute of Biological Psychiatry MHC Sct Hans Mental Health Devices Copenhagen   (Denmark)

^d EMBRAPA INFORMÁTICA AGROPECUÁRIA   (Brazil)

^e UNIVERSITY OF CAMPINAS   (Brazil)

^f FASTERIS SA   (Switzerland)

Author keywords

de novo assembly; gene rich regions; methylation filtration; Saccharum spp; sugarcane

Indexed keywords

ALKYLATION; CROPS; DATA PROCESSING; METHYLATION; RNA; SCAFFOLDS; SUGAR CANE;

BACTERIAL ARTIFICIAL CHROMOSOMES; DE NOVO ASSEMBLIES; EXPRESSED SEQUENCE TAGS; GENE-RICH REGIONS; METHYLATION FILTRATIONS; SACCHARUM SPP; SINGLE NUCLEOTIDE POLYMORPHISMS; WHOLE-GENOME SHOTGUN;

GENES;

BACTERIA (MICROORGANISMS); SACCHARUM; SACCHARUM OFFICINARUM; SACCHARUM SPONTANEUM; SORGHUM (GENUS);

MICRORNA; PLANT DNA; PLANT RNA; VEGETABLE PROTEIN;

BACTERIAL ARTIFICIAL CHROMOSOME; CROP; DNA METHYLATION; EXPRESSED SEQUENCE TAG; GENE LIBRARY; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; NUCLEOTIDE REPEAT; PLANT CHROMOSOME; PLANT GENOME; PLANT LEAF; PROCEDURES; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SORGHUM; SUGARCANE;

CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, PLANT; CROPS, AGRICULTURAL; DNA METHYLATION; DNA, PLANT; EXPRESSED SEQUENCE TAGS; GENE LIBRARY; GENOME, PLANT; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MICRORNAS; PLANT LEAVES; PLANT PROTEINS; POLYMORPHISM, SINGLE NUCLEOTIDE; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA, PLANT; SACCHARUM; SEQUENCE ANALYSIS; SORGHUM;

EID: 84903277942     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12539     Document Type: Article

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