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Volumn 14, Issue 1, 2013, Pages

Haplotype analysis of sucrose synthase gene family in three Saccharum species

Author keywords

Haplotype; Saccharum officinarum; Saccharum robustum; Saccharum spontaneum; Single nucleotide polymorphisms; Sucrose synthase

Indexed keywords

SUCROSE SYNTHASE;

EID: 84877270766     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-314     Document Type: Article
Times cited : (56)

References (47)
  • 2
    • 0032908341 scopus 로고    scopus 로고
    • Saccharum species as horticultural classes
    • Irvine JE. Saccharum species as horticultural classes. Theor Appl Genet 1999, 98(2):186-194.
    • (1999) Theor Appl Genet , vol.98 , Issue.2 , pp. 186-194
    • Irvine, J.E.1
  • 4
    • 1942446361 scopus 로고    scopus 로고
    • Genome remodelling in three modern S-officinarumxS-spontaneum sugarcane cultivars
    • 10.1093/jxb/erh093, 14990623
    • Cuadrado A, Acevedo R, de la Espina SMD, Jouve N, de la Torre C. Genome remodelling in three modern S-officinarumxS-spontaneum sugarcane cultivars. J Exp Bot 2004, 55(398):847-854. 10.1093/jxb/erh093, 14990623.
    • (2004) J Exp Bot , vol.55 , Issue.398 , pp. 847-854
    • Cuadrado, A.1    Acevedo, R.2    de la Espina, S.M.D.3    Jouve, N.4    de la Torre, C.5
  • 5
    • 0029670023 scopus 로고    scopus 로고
    • Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics
    • D'Hont A, Grivet L, Feldmann P, Rao S, Berding N, Glaszmann JC. Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics. Mol Gen Genet 1996, 250(4):405-413.
    • (1996) Mol Gen Genet , vol.250 , Issue.4 , pp. 405-413
    • D'Hont, A.1    Grivet, L.2    Feldmann, P.3    Rao, S.4    Berding, N.5    Glaszmann, J.C.6
  • 7
    • 33644897887 scopus 로고    scopus 로고
    • The plant energy-dissipating mitochondrial systems: depicting the genomic structure and the expression profiles of the gene families of uncoupling protein and alternative oxidase in monocots and dicots
    • 10.1093/jxb/erj070, 16473895
    • Borecky J, Nogueira FTS, de Oliveira KAP, Maia IG, Vercesi AE, Arruda P. The plant energy-dissipating mitochondrial systems: depicting the genomic structure and the expression profiles of the gene families of uncoupling protein and alternative oxidase in monocots and dicots. J Exp Bot 2006, 57(4):849-864. 10.1093/jxb/erj070, 16473895.
    • (2006) J Exp Bot , vol.57 , Issue.4 , pp. 849-864
    • Borecky, J.1    Nogueira, F.T.S.2    de Oliveira, K.A.P.3    Maia, I.G.4    Vercesi, A.E.5    Arruda, P.6
  • 11
    • 0031474754 scopus 로고    scopus 로고
    • Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize
    • Guimaraes CT, Sills GR, Sobral BWS. Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize. P Natl Acad Sci USA 1997, 94(26):14261-14266.
    • (1997) P Natl Acad Sci USA , vol.94 , Issue.26 , pp. 14261-14266
    • Guimaraes, C.T.1    Sills, G.R.2    Sobral, B.W.S.3
  • 12
    • 0031791086 scopus 로고    scopus 로고
    • Detailed alignment of Saccharum and Sorghum chromosomes: Comparative organization of closely related diploid and polyploid genomes
    • 1460436, 9832541
    • Ming R, Liu SC, Lin YR, da Silva J, Wilson W, Braga D, van Deynze A, Wenslaff TF, Wu KK, Moore PH. Detailed alignment of Saccharum and Sorghum chromosomes: Comparative organization of closely related diploid and polyploid genomes. Genetics 1998, 150(4):1663-1682. 1460436, 9832541.
    • (1998) Genetics , vol.150 , Issue.4 , pp. 1663-1682
    • Ming, R.1    Liu, S.C.2    Lin, Y.R.3    da Silva, J.4    Wilson, W.5    Braga, D.6    van Deynze, A.7    Wenslaff, T.F.8    Wu, K.K.9    Moore, P.H.10
  • 13
    • 34248561466 scopus 로고    scopus 로고
    • Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome
    • 10.1111/j.1365-313X.2007.03082.x, 17425713
    • Jannoo N, Grivet L, Chantret N, Garsmeur O, Glaszmann JC, Arruda P, D'Hont A. Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome. Plant J 2007, 50(4):574-585. 10.1111/j.1365-313X.2007.03082.x, 17425713.
    • (2007) Plant J , vol.50 , Issue.4 , pp. 574-585
    • Jannoo, N.1    Grivet, L.2    Chantret, N.3    Garsmeur, O.4    Glaszmann, J.C.5    Arruda, P.6    D'Hont, A.7
  • 14
    • 77951143508 scopus 로고    scopus 로고
    • Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes
    • 10.1186/1471-2164-11-261, 2882929, 20416060
    • Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC Genomics 2010, 11:261. 10.1186/1471-2164-11-261, 2882929, 20416060.
    • (2010) BMC Genomics , vol.11 , pp. 261
    • Wang, J.1    Roe, B.2    Macmil, S.3    Yu, Q.4    Murray, J.E.5    Tang, H.6    Chen, C.7    Najar, F.8    Wiley, G.9    Bowers, J.10
  • 15
    • 0031706068 scopus 로고    scopus 로고
    • Genetic evidence that the two isozymes of sucrose synthase present in developing maize endosperm are critical, one for cell wall integrity and the other for starch biosynthesis
    • 10.1007/s004380050792, 9738884
    • Chourey PS, Taliercio EW, Carlson SJ, Ruan YL. Genetic evidence that the two isozymes of sucrose synthase present in developing maize endosperm are critical, one for cell wall integrity and the other for starch biosynthesis. Mol Gen Genet 1998, 259(1):88-96. 10.1007/s004380050792, 9738884.
    • (1998) Mol Gen Genet , vol.259 , Issue.1 , pp. 88-96
    • Chourey, P.S.1    Taliercio, E.W.2    Carlson, S.J.3    Ruan, Y.L.4
  • 16
    • 0001733176 scopus 로고    scopus 로고
    • Sugar and metabolic regulation of genes for sucrose metabolism: potential influence of maize sucrose synthase and soluble invertase responses on carbon partitioning and sugar sensing
    • 10.1093/jxb/47.Special_Issue.1179, 21245246
    • Koch KE, Wu Y, Xu J. Sugar and metabolic regulation of genes for sucrose metabolism: potential influence of maize sucrose synthase and soluble invertase responses on carbon partitioning and sugar sensing. J Exp Bot 1996, 47:1179-1185. 10.1093/jxb/47.Special_Issue.1179, 21245246.
    • (1996) J Exp Bot , vol.47 , pp. 1179-1185
    • Koch, K.E.1    Wu, Y.2    Xu, J.3
  • 17
    • 0032825140 scopus 로고    scopus 로고
    • Starch synthesis in tomato remains constant throughout fruit development and is dependent on sucrose supply and sucrose synthase activity
    • N'tchobo H, Dali N, Nguyen-Quoc B, Foyer CH, Yelle S. Starch synthesis in tomato remains constant throughout fruit development and is dependent on sucrose supply and sucrose synthase activity. J Exp Bot 1999, 50(338):1457-1463.
    • (1999) J Exp Bot , vol.50 , Issue.338 , pp. 1457-1463
    • N'tchobo, H.1    Dali, N.2    Nguyen-Quoc, B.3    Foyer, C.H.4    Yelle, S.5
  • 18
    • 0036679367 scopus 로고    scopus 로고
    • Seasonal changes of sucrose-phosphate synthase and sucrose synthase activities in poplar wood (Populus x canadensis Moench < robusta >) and their possible role in carbohydrate metabolism
    • Schrader S, Sauter JJ. Seasonal changes of sucrose-phosphate synthase and sucrose synthase activities in poplar wood (Populus x canadensis Moench < robusta >) and their possible role in carbohydrate metabolism. J Plant Physiol 2002, 159(8):833-843.
    • (2002) J Plant Physiol , vol.159 , Issue.8 , pp. 833-843
    • Schrader, S.1    Sauter, J.J.2
  • 19
    • 0032906010 scopus 로고    scopus 로고
    • Sugar metabolism during growth and development in sugarcane internodes
    • Lingle SE. Sugar metabolism during growth and development in sugarcane internodes. Crop Sci 1999, 39(2):480-486.
    • (1999) Crop Sci , vol.39 , Issue.2 , pp. 480-486
    • Lingle, S.E.1
  • 20
    • 0034092953 scopus 로고    scopus 로고
    • Sucrose phosphate synthase and sucrose synthase activity during maturation of internodal tissue in sugarcane
    • Botha FC, Black KG. Sucrose phosphate synthase and sucrose synthase activity during maturation of internodal tissue in sugarcane. Aust J Plant Physiol 2000, 27(1):81-85.
    • (2000) Aust J Plant Physiol , vol.27 , Issue.1 , pp. 81-85
    • Botha, F.C.1    Black, K.G.2
  • 21
    • 0035125328 scopus 로고    scopus 로고
    • Cloning and expression of sucrose synthase-1 cDNA from sugarcane
    • Lingle SE, Dyer JM. Cloning and expression of sucrose synthase-1 cDNA from sugarcane. J Plant Physiol 2001, 158(1):129-131.
    • (2001) J Plant Physiol , vol.158 , Issue.1 , pp. 129-131
    • Lingle, S.E.1    Dyer, J.M.2
  • 22
    • 0036010764 scopus 로고    scopus 로고
    • Gene expression studies on developing kernels of maize sucrose synthase (SuSy) mutants show evidence for a third SuSy gene
    • 10.1023/A:1014457901992, 12008896
    • Carlson SJ, Chourey PS, Helentjaris T, Datta R. Gene expression studies on developing kernels of maize sucrose synthase (SuSy) mutants show evidence for a third SuSy gene. Plant Mol Biol 2002, 49(1):15-29. 10.1023/A:1014457901992, 12008896.
    • (2002) Plant Mol Biol , vol.49 , Issue.1 , pp. 15-29
    • Carlson, S.J.1    Chourey, P.S.2    Helentjaris, T.3    Datta, R.4
  • 23
    • 33747851344 scopus 로고    scopus 로고
    • The three maize sucrose synthase Isoforms differ in distribution, localization, and phosphorylation
    • 10.1093/pcp/pcj068, 16760218
    • Duncan KA, Hardin SC, Huber SC. The three maize sucrose synthase Isoforms differ in distribution, localization, and phosphorylation. Plant Cell Physiol 2006, 47(7):959-971. 10.1093/pcp/pcj068, 16760218.
    • (2006) Plant Cell Physiol , vol.47 , Issue.7 , pp. 959-971
    • Duncan, K.A.1    Hardin, S.C.2    Huber, S.C.3
  • 24
    • 41149097461 scopus 로고    scopus 로고
    • An expression analysis profile for the entire sucrose synthase gene family in rice
    • Hirose T, Scofield GN, Terao T. An expression analysis profile for the entire sucrose synthase gene family in rice. Plant Sci 2008, 174(5):534-543.
    • (2008) Plant Sci , vol.174 , Issue.5 , pp. 534-543
    • Hirose, T.1    Scofield, G.N.2    Terao, T.3
  • 26
    • 77958575245 scopus 로고    scopus 로고
    • Genome-Wide Analysis of WOX Gene Family in Rice, Sorghum, Maize, Arabidopsis and Poplar
    • 10.1111/j.1744-7909.2010.00982.x, 20977659
    • Zhang X, Zong J, Liu JH, Yin JY, Zhang DB. Genome-Wide Analysis of WOX Gene Family in Rice, Sorghum, Maize, Arabidopsis and Poplar. J Integr Plant Biol 2010, 52(11):1016-1026. 10.1111/j.1744-7909.2010.00982.x, 20977659.
    • (2010) J Integr Plant Biol , vol.52 , Issue.11 , pp. 1016-1026
    • Zhang, X.1    Zong, J.2    Liu, J.H.3    Yin, J.Y.4    Zhang, D.B.5
  • 27
    • 84974799760 scopus 로고    scopus 로고
    • Structure, expression profile and subcellular localisation of four different sucrose synthase genes from barley
    • 10.1007/s00425-011-1408-x, 21505865
    • Barrero-Sicilia C, Hernando-Amado S, Gonzalez-Melendi P, Carbonero P. Structure, expression profile and subcellular localisation of four different sucrose synthase genes from barley. Planta 2011, 234(2):391-403. 10.1007/s00425-011-1408-x, 21505865.
    • (2011) Planta , vol.234 , Issue.2 , pp. 391-403
    • Barrero-Sicilia, C.1    Hernando-Amado, S.2    Gonzalez-Melendi, P.3    Carbonero, P.4
  • 28
    • 0036261805 scopus 로고    scopus 로고
    • Genes expressed in sugarcane maturing internodal tissue
    • Carson DL, Botha FC. Genes expressed in sugarcane maturing internodal tissue. Plant Cell Rep 2002, 20(11):1075-1081.
    • (2002) Plant Cell Rep , vol.20 , Issue.11 , pp. 1075-1081
    • Carson, D.L.1    Botha, F.C.2
  • 31
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • 10.1093/molbev/msm088, 17483113
    • Yang ZH. PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591. 10.1093/molbev/msm088, 17483113.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.H.1
  • 32
    • 77955695587 scopus 로고    scopus 로고
    • Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants
    • 10.1104/pp.110.157396, 2923894, 20522724
    • Zhang PF, Dreher K, Karthikeyan A, Chi A, Pujar A, Caspi R, Karp P, Kirkup V, Latendresse M, Lee C. Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants. Plant Physiol 2010, 153(4):1479-1491. 10.1104/pp.110.157396, 2923894, 20522724.
    • (2010) Plant Physiol , vol.153 , Issue.4 , pp. 1479-1491
    • Zhang, P.F.1    Dreher, K.2    Karthikeyan, A.3    Chi, A.4    Pujar, A.5    Caspi, R.6    Karp, P.7    Kirkup, V.8    Latendresse, M.9    Lee, C.10
  • 33
    • 0036006863 scopus 로고    scopus 로고
    • Analysis of sucrose synthase genes in citrus suggests different roles and phylogenetic relationships
    • 10.1093/jexbot/53.366.61, 11741042
    • Komatsu A, Moriguchi T, Koyama K, Omura M, Akihama T. Analysis of sucrose synthase genes in citrus suggests different roles and phylogenetic relationships. J Exp Bot 2002, 53(366):61-71. 10.1093/jexbot/53.366.61, 11741042.
    • (2002) J Exp Bot , vol.53 , Issue.366 , pp. 61-71
    • Komatsu, A.1    Moriguchi, T.2    Koyama, K.3    Omura, M.4    Akihama, T.5
  • 34
    • 2442517979 scopus 로고    scopus 로고
    • Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    • 10.1007/s00239-003-2564-9, 15114421
    • Chaw SM, Chang CC, Chen HL, Li WH. Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. J Mol Evol 2004, 58(4):424-441. 10.1007/s00239-003-2564-9, 15114421.
    • (2004) J Mol Evol , vol.58 , Issue.4 , pp. 424-441
    • Chaw, S.M.1    Chang, C.C.2    Chen, H.L.3    Li, W.H.4
  • 35
    • 64749112341 scopus 로고    scopus 로고
    • Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing
    • 10.1111/j.1467-7652.2009.00401.x, 19386042
    • Bundock PC, Eliott FG, Ablett G, Benson AD, Casu RE, Aitken KS, Henry RJ. Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing. Plant Biotechnol J 2009, 7(4):347-354. 10.1111/j.1467-7652.2009.00401.x, 19386042.
    • (2009) Plant Biotechnol J , vol.7 , Issue.4 , pp. 347-354
    • Bundock, P.C.1    Eliott, F.G.2    Ablett, G.3    Benson, A.D.4    Casu, R.E.5    Aitken, K.S.6    Henry, R.J.7
  • 36
    • 33646538701 scopus 로고    scopus 로고
    • Characterisation of single nucleotide polymorphisms in sugarcane ESTs
    • 10.1007/s00122-006-0300-8, 16791699
    • Cordeiro GM, Eliott F, McIntyre CL, Casu RE, Henry RJ. Characterisation of single nucleotide polymorphisms in sugarcane ESTs. Theor Appl Genet 2006, 113(2):331-343. 10.1007/s00122-006-0300-8, 16791699.
    • (2006) Theor Appl Genet , vol.113 , Issue.2 , pp. 331-343
    • Cordeiro, G.M.1    Eliott, F.2    McIntyre, C.L.3    Casu, R.E.4    Henry, R.J.5
  • 37
    • 84869051880 scopus 로고    scopus 로고
    • Purifying Selection Modulates the Estimates of Population Differentiation and Confounds Genome-Wide Comparisons across Single-Nucleotide Polymorphisms
    • 10.1093/molbev/mss187, 22826460
    • Maruki T, Kumar S, Kim Y. Purifying Selection Modulates the Estimates of Population Differentiation and Confounds Genome-Wide Comparisons across Single-Nucleotide Polymorphisms. Mol Biol Evol 2012, 29(12):3617-3623. 10.1093/molbev/mss187, 22826460.
    • (2012) Mol Biol Evol , vol.29 , Issue.12 , pp. 3617-3623
    • Maruki, T.1    Kumar, S.2    Kim, Y.3
  • 38
    • 0024268520 scopus 로고
    • A Cladistic-Analysis of Phenotype Associations with Haplotypes Inferred from Restriction Endonuclease Mapping.2. The Analysis of Natural-Populations
    • 1203577, 3147219
    • Templeton AR, Sing CF, Kessling A, Humphries S. A Cladistic-Analysis of Phenotype Associations with Haplotypes Inferred from Restriction Endonuclease Mapping.2. The Analysis of Natural-Populations. Genetics 1988, 120(4):1145-1154. 1203577, 3147219.
    • (1988) Genetics , vol.120 , Issue.4 , pp. 1145-1154
    • Templeton, A.R.1    Sing, C.F.2    Kessling, A.3    Humphries, S.4
  • 39
    • 0032533518 scopus 로고    scopus 로고
    • Identification of a human gene encoding a homologue of Saccharomyces cerevisiae EXO1, an exonuclease implicated in mismatch repair and recombination
    • Tishkoff DX, Amin NS, Viars CS, Arden KC, Kolodner RD. Identification of a human gene encoding a homologue of Saccharomyces cerevisiae EXO1, an exonuclease implicated in mismatch repair and recombination. Cancer Res 1998, 58(22):5027-5031.
    • (1998) Cancer Res , vol.58 , Issue.22 , pp. 5027-5031
    • Tishkoff, D.X.1    Amin, N.S.2    Viars, C.S.3    Arden, K.C.4    Kolodner, R.D.5
  • 40
    • 77952275086 scopus 로고    scopus 로고
    • Analysis of clonal germplasm from five Saccharum species: S. barberi, S. robustum, S. officinarum, S. sinense and S. spontaneum. A study of inter- and intra species relationships using microsatellite markers
    • Brown JS, Schnell RJ, Power EJ, Douglas SL, Kuhn DN. Analysis of clonal germplasm from five Saccharum species: S. barberi, S. robustum, S. officinarum, S. sinense and S. spontaneum. A study of inter- and intra species relationships using microsatellite markers. Genet Resour Crop Ev 2007, 54(3):627-648.
    • (2007) Genet Resour Crop Ev , vol.54 , Issue.3 , pp. 627-648
    • Brown, J.S.1    Schnell, R.J.2    Power, E.J.3    Douglas, S.L.4    Kuhn, D.N.5
  • 42
    • 84862811115 scopus 로고
    • Sao Paulo: ISSCT, Proceedings of International Soceity of Sugarcane Technologists XX Congress: 1989
    • Moore PH, Nagai C, Fitch M. Production and Evaluation of Sugarcane Hybrids 1989, 599-601. Sao Paulo: ISSCT, Proceedings of International Soceity of Sugarcane Technologists XX Congress: 1989.
    • (1989) Production and Evaluation of Sugarcane Hybrids , pp. 599-601
    • Moore, P.H.1    Nagai, C.2    Fitch, M.3
  • 43
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • 10.1006/jmbi.1997.0951, 9149143
    • Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol 1997, 268(1):78-94. 10.1006/jmbi.1997.0951, 9149143.
    • (1997) J Mol Biol , vol.268 , Issue.1 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 44
    • 77949512406 scopus 로고    scopus 로고
    • Tablet-next generation sequence assembly visualization
    • 10.1093/bioinformatics/btp666, 2815658, 19965881
    • Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. Tablet-next generation sequence assembly visualization. Bioinformatics 2010, 26(3):401-402. 10.1093/bioinformatics/btp666, 2815658, 19965881.
    • (2010) Bioinformatics , vol.26 , Issue.3 , pp. 401-402
    • Milne, I.1    Bayer, M.2    Cardle, L.3    Shaw, P.4    Stephen, G.5    Wright, F.6    Marshall, D.7
  • 45
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page RDM. TreeView: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996, 12(4):357-358.
    • (1996) Comput Appl Biosci , vol.12 , Issue.4 , pp. 357-358
    • Page, R.D.M.1
  • 47
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
    • 10.1093/nar/gkl315, 1538804, 16845082
    • Suyama M, Torrents D, Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 2006, 34:W609-W612. 10.1093/nar/gkl315, 1538804, 16845082.
    • (2006) Nucleic Acids Res , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3


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