-
1
-
-
26944459614
-
Structure and mechanism of Escherichia coli RecA ATPase
-
Bell, C.E. (2005) Structure and mechanism of Escherichia coli RecA ATPase. Mol. Microbiol., 58, 358-366.
-
(2005)
Mol. Microbiol.
, vol.58
, pp. 358-366
-
-
Bell, C.E.1
-
2
-
-
44349162159
-
Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures
-
Chen, Z., Yang, H. and Pavletich, N.P. (2008) Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature, 453, 489-484.
-
(2008)
Nature
, vol.453
, pp. 489-484
-
-
Chen, Z.1
Yang, H.2
Pavletich, N.P.3
-
3
-
-
84868615392
-
Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA
-
Bell, J.C., Plank, J.L., Dombrowski, C.C. and Kowalczykowski, S.C. (2012) Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA. Nature, 491, 274-278.
-
(2012)
Nature
, vol.491
, pp. 274-278
-
-
Bell, J.C.1
Plank, J.L.2
Dombrowski, C.C.3
Kowalczykowski, S.C.4
-
4
-
-
33746713745
-
Real-time observation of RecA filament dynamics with single monomer resolution
-
Joo, C., McKinney, S.A., Nakamura, M., Rasnik, I., Myong, S. and Ha, T. (2006) Real-time observation of RecA filament dynamics with single monomer resolution. Cell, 126, 515-527.
-
(2006)
Cell
, vol.126
, pp. 515-527
-
-
Joo, C.1
McKinney, S.A.2
Nakamura, M.3
Rasnik, I.4
Myong, S.5
Ha, T.6
-
5
-
-
0029620927
-
Photocross-links between single-stranded DNA and Escherichia coli RecA protein map to loops L1 (amino acid residues 157-164) and L2 (amino acid residues 195-209)
-
Malkov, V.A. and Camerini-Otero, R.D. (1995) Photocross-links between single-stranded DNA and Escherichia coli RecA protein map to loops L1 (amino acid residues 157-164) and L2 (amino acid residues 195-209). J. Biol. Chem., 270, 30230-30233.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 30230-30233
-
-
Malkov, V.A.1
Camerini-Otero, R.D.2
-
6
-
-
0030664070
-
An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing
-
Aihara, H., Ito, Y., Kurumizaka, H., Terada, T., Yokoyama, S. and Shibata, T. (1997) An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing. J. Mol. Biol., 274, 213-221.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 213-221
-
-
Aihara, H.1
Ito, Y.2
Kurumizaka, H.3
Terada, T.4
Yokoyama, S.5
Shibata, T.6
-
7
-
-
0034716934
-
Mutations in the N-terminal region of RecA that disrupt the stability of free protein oligomers but not RecA-DNA complexes
-
Eldin, S., Forget, A.L., Lindenmuth, D.M., Logan, K.M. and Knight, K.L. (2000) Mutations in the N-terminal region of RecA that disrupt the stability of free protein oligomers but not RecA-DNA complexes. J. Mol. Biol., 299, 91-101.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 91-101
-
-
Eldin, S.1
Forget, A.L.2
Lindenmuth, D.M.3
Logan, K.M.4
Knight, K.L.5
-
8
-
-
54049101177
-
Bacillus subtilis RecO nucleates RecA onto SsbA-coated single-stranded DNA
-
Manfredi, C., Carrasco, B., Ayora, S. and Alonso, J.C. (2008) Bacillus subtilis RecO nucleates RecA onto SsbA-coated single-stranded DNA. J. Biol. Chem., 283, 24837-24847.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 24837-24847
-
-
Manfredi, C.1
Carrasco, B.2
Ayora, S.3
Alonso, J.C.4
-
9
-
-
84867406977
-
RecFOR proteins target RecA protein to a DNA gap with either DNA or RNA at the 5' terminus: Implication for repair of stalled replication forks
-
Morimatsu, K., Wu, Y. and Kowalczykowski, S.C. (2012) RecFOR proteins target RecA protein to a DNA gap with either DNA or RNA at the 5' terminus: Implication for repair of stalled replication forks. J. Biol. Chem., 287, 35621-35630.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 35621-35630
-
-
Morimatsu, K.1
Wu, Y.2
Kowalczykowski, S.C.3
-
10
-
-
84873456473
-
RecA-promoted, RecFOR-independent progressive disassembly of replisomes stalled by helicase inactivation
-
Lia, G., Rigato, A., Long, E., Chagneau, C., Le Masson, M., Allemand, J.F. and Michel, B. (2013) RecA-promoted, RecFOR-independent progressive disassembly of replisomes stalled by helicase inactivation. Mol. Cell, 49, 547-557.
-
(2013)
Mol. Cell
, vol.49
, pp. 547-557
-
-
Lia, G.1
Rigato, A.2
Long, E.3
Chagneau, C.4
Le Masson, M.5
Allemand, J.F.6
Michel, B.7
-
11
-
-
84859005256
-
The role of Deinococcus radiodurans RecFOR proteins in homologous recombination
-
Satoh, K., Kikuchi, M., Ishaque, A.M., Ohba, H., Yamada, M., Tejima, K., Onodera, T. and Narumi, I. (2012) The role of Deinococcus radiodurans RecFOR proteins in homologous recombination. DNA Repair (Amst.), 11, 410-418.
-
(2012)
DNA Repair (Amst.)
, vol.11
, pp. 410-418
-
-
Satoh, K.1
Kikuchi, M.2
Ishaque, A.M.3
Ohba, H.4
Yamada, M.5
Tejima, K.6
Onodera, T.7
Narumi, I.8
-
12
-
-
76749109918
-
A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans
-
Bentchikou, E., Servant, P., Coste, G. and Sommer, S. (2010) A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans. PLoS Genet., 6, e1000774.
-
(2010)
PLoS Genet.
, vol.6
-
-
Bentchikou, E.1
Servant, P.2
Coste, G.3
Sommer, S.4
-
14
-
-
34447325120
-
A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA
-
Mortier-Barriere, I., Velten, M., Dupaigne, P., Mirouze, N., Pietrement, O., McGovern, S., Fichant, G., Martin, B., Noirot, P., Le Cam, E. et al. (2007) A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA. Cell, 130, 824-836.
-
(2007)
Cell
, vol.130
, pp. 824-836
-
-
Mortier-Barriere, I.1
Velten, M.2
Dupaigne, P.3
Mirouze, N.4
Pietrement, O.5
McGovern, S.6
Fichant, G.7
Martin, B.8
Noirot, P.9
Le Cam, E.10
-
15
-
-
0142125292
-
Transformation of Streptococcus pneumoniae relies on DprA-and RecA-dependent protection of incoming DNA single strands
-
Berge, M., Mortier-Barriere, I., Martin, B. and Claverys, J.P. (2003) Transformation of Streptococcus pneumoniae relies on DprA-and RecA-dependent protection of incoming DNA single strands. Mol. Microbiol., 50, 527-536.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 527-536
-
-
Berge, M.1
Mortier-Barriere, I.2
Martin, B.3
Claverys, J.P.4
-
16
-
-
84881257566
-
Bacillus subtilis DprA recruits RecA onto ssDNA and mediates annealing of complementary ssDNA strands coated by SsbB and SsbA
-
Yadav, T., Carrasco, B., Hejna, J., Suzuki, Y., Takeyasu, K. and Alonso, J.C. (2013) Bacillus subtilis DprA recruits RecA onto ssDNA and mediates annealing of complementary ssDNA strands coated by SsbB and SsbA. J. Biol. Chem., 288, 22437-22450.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 22437-22450
-
-
Yadav, T.1
Carrasco, B.2
Hejna, J.3
Suzuki, Y.4
Takeyasu, K.5
Alonso, J.C.6
-
17
-
-
84862157578
-
Genetic recombination in Bacillus subtilis: A division of labor between two single-strand DNA-binding proteins
-
Yadav, T., Carrasco, B., Myers, A.R., George, N.P., Keck, J.L. and Alonso, J.C. (2012) Genetic recombination in Bacillus subtilis: A division of labor between two single-strand DNA-binding proteins. Nucleic Acids Res., 40, 5546-5559.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5546-5559
-
-
Yadav, T.1
Carrasco, B.2
Myers, A.R.3
George, N.P.4
Keck, J.L.5
Alonso, J.C.6
-
18
-
-
84866295476
-
Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation
-
Quevillon-Cheruel, S., Campo, N., Mirouze, N., Mortier-Barriere, I., Brooks, M.A., Boudes, M., Durand, D., Soulet, A.L., Lisboa, J., Noirot, P. et al. (2012) Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation. Proc. Natl. Acad. Sci. U.S.A., 109, E2466-E2475.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
-
-
Quevillon-Cheruel, S.1
Campo, N.2
Mirouze, N.3
Mortier-Barriere, I.4
Brooks, M.A.5
Boudes, M.6
Durand, D.7
Soulet, A.L.8
Lisboa, J.9
Noirot, P.10
-
19
-
-
84888818673
-
Scoring functions for protein-protein interactions
-
Moal, I.H., Moretti, R., Baker, D. and Fernandez-Recio, J. (2013) Scoring functions for protein-protein interactions. Curr. Opin. Struct. Biol., 23, 862-867.
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 862-867
-
-
Moal, I.H.1
Moretti, R.2
Baker, D.3
Fernandez-Recio, J.4
-
20
-
-
84861015413
-
InterEvol database: Exploring the structure and evolution of protein complex interfaces
-
Faure, G., Andreani, J. and Guerois, R. (2012) InterEvol database: Exploring the structure and evolution of protein complex interfaces. Nucleic Acids Res., 40, D847-D856.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Faure, G.1
Andreani, J.2
Guerois, R.3
-
21
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede, T., Kopp, J., Guex, N. and Peitsch, M.C. (2003) SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res., 31, 3381-3385.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
22
-
-
79551613290
-
Toward the estimation of the absolute quality of individual protein structure models
-
Benkert, P., Biasini, M. and Schwede, T. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27, 343-350.
-
(2011)
Bioinformatics
, vol.27
, pp. 343-350
-
-
Benkert, P.1
Biasini, M.2
Schwede, T.3
-
23
-
-
35449008122
-
Integrating statistical pair potentials into protein complex prediction
-
Mintseris, J., Pierce, B., Wiehe, K., Anderson, R., Chen, R. and Weng, Z. (2007) Integrating statistical pair potentials into protein complex prediction. Proteins, 69, 511-520.
-
(2007)
Proteins
, vol.69
, pp. 511-520
-
-
Mintseris, J.1
Pierce, B.2
Wiehe, K.3
Anderson, R.4
Chen, R.5
Weng, Z.6
-
24
-
-
34248513078
-
ZRANK: Reranking protein docking predictions with an optimized energy function
-
Pierce, B. and Weng, Z. (2007) ZRANK: Reranking protein docking predictions with an optimized energy function. Proteins, 67, 1078-1086.
-
(2007)
Proteins
, vol.67
, pp. 1078-1086
-
-
Pierce, B.1
Weng, Z.2
-
25
-
-
0033614004
-
Asparagine and glutamine: Using hydrogen atom contacts in the choice of side-chain amide orientation
-
Word, J.M., Lovell, S.C., Richardson, J.S. and Richardson, D.C. (1999) Asparagine and glutamine: Using hydrogen atom contacts in the choice of side-chain amide orientation. J. Mol. Biol., 285, 1735-1747.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1735-1747
-
-
Wword, J.M.1
Lovell, S.C.2
Richardson, J.S.3
Richardson, D.C.4
-
26
-
-
84880245822
-
Inter EvScore: A novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution
-
Andreani, J., Faure, G. and Guerois, R. (2013) InterEvScore: A novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution. Bioinformatics, 29, 1742-1749.
-
(2013)
Bioinformatics
, vol.29
, pp. 1742-1749
-
-
Andreani, J.1
Faure, G.2
Guerois, R.3
-
27
-
-
0033556236
-
Peptide folding: When simulation meets experiment
-
Daura, X., Gademann, K., Jaun, B., Seebach, D., van Gunsteren, W.F. and Mark, A.E. (1999) Peptide folding: When simulation meets experiment. Angew. Chem. Int. Ed., 38, 236-240.
-
(1999)
Angew. Chem. Int. Ed.
, vol.38
, pp. 236-240
-
-
Daura, X.1
Gademann, K.2
Jaun, B.3
Seebach, D.4
Van Gunsteren, W.F.5
Mark, A.E.6
-
28
-
-
36748998784
-
HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets
-
de Vries, S.J., van Dijk, A.D., Krzeminski, M., van Dijk, M., Thureau, A., Hsu, V., Wassenaar, T. and Bonvin, A.M. (2007) HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets. Proteins, 69, 726-733.
-
(2007)
Proteins
, vol.69
, pp. 726-733
-
-
De Vries, S.J.1
Van Dijk, A.D.2
Krzeminski, M.3
Van Dijk, M.4
Thureau, A.5
Hsu, V.6
Wassenaar, T.7
Bonvin, A.M.8
-
29
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez, C., Boelens, R. and Bonvin, A.M. (2003) HADDOCK: A protein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc., 125, 1731-1737.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
30
-
-
0030455820
-
Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
-
James, P., Halladay, J. and Craig, E.A. (1996) Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics, 144, 1425-1436.
-
(1996)
Genetics
, vol.144
, pp. 1425-1436
-
-
James, P.1
Halladay, J.2
Craig, E.A.3
-
31
-
-
4143051195
-
Comparison of site-specific rate-inference methods for protein sequences: Empirical Bayesian methods are superior
-
Mayrose, I., Graur, D., Ben-Tal, N. and Pupko, T. (2004) Comparison of site-specific rate-inference methods for protein sequences: Empirical Bayesian methods are superior. Mol. Biol. Evol., 21, 1781-1791.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1781-1791
-
-
Mayrose, I.1
Graur, D.2
Ben-Tal, N.3
Pupko, T.4
-
32
-
-
0038526303
-
ZDOCK: An initial-stage protein-docking algorithm
-
Chen, R., Li, L. and Weng, Z. (2003) ZDOCK: An initial-stage protein-docking algorithm. Proteins, 52, 80-87.
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
33
-
-
64549106038
-
Convergence and combination of methods in protein-protein docking
-
Vajda, S. and Kozakov, D. (2009) Convergence and combination of methods in protein-protein docking. Curr. Opin. Struct. Biol., 19, 164-170.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 164-170
-
-
Vajda, S.1
Kozakov, D.2
-
34
-
-
4444308700
-
Crystal structures of Escherichia coli RecA in a compressed helical filament
-
Xing, X. and Bell, C.E. (2004) Crystal structures of Escherichia coli RecA in a compressed helical filament. J. Mol. Biol., 342, 1471-1485.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1471-1485
-
-
Xing, X.1
Bell, C.E.2
-
35
-
-
84898953641
-
Structural insights into the unique single-stranded DNA-binding mode of Helicobacter pylori DprA
-
Wang, W., Ding, J., Zhang, Y., Hu, Y. and Wang, D.C. (2013) Structural insights into the unique single-stranded DNA-binding mode of Helicobacter pylori DprA. Nucleic Acids Res., 42 , 3478-3491.
-
(2013)
Nucleic Acids Res.
, vol.42
, pp. 3478-3491
-
-
Wang, W.1
Ding, J.2
Zhang, Y.3
Hu, Y.4
Wang, D.C.5
-
36
-
-
33847778234
-
Motoring along with the bacterial RecA protein
-
Cox, M.M. (2007) Motoring along with the bacterial RecA protein. Nat. Rev. Mol. Cell Biol., 8, 127-138.
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 127-138
-
-
Cox, M.M.1
-
37
-
-
84866108547
-
Versatility and invariance in the evolution of homologous heteromeric interfaces
-
Andreani, J., Faure, G. and Guerois, R. (2012) Versatility and invariance in the evolution of homologous heteromeric interfaces. PLoS Comput. Biol., 8, e1002677.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Andreani, J.1
Faure, G.2
Guerois, R.3
|