Origins and genetic conservation of tropical trees in agroforestry systems: A case study from the Peruvian Amazon

Conservation Genetics

Volumn 9, Issue 2, 2008, Pages 361-372

  Dawson, Ian K ^a   Hollingsworth, Peter M ^b   Doyle, Jeff J ^c   Kresovich, Steve ^c   Weber, John C ^a   Sotelo Montes, Carmen ^a,e   Pennington, Terrence D ^d   Pennington, R Toby ^b  

^a WORLD AGROFORESTRY CENTRE ICRAF   (Kenya)

^b ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^c Department of Molecular Biology and Genetics   (United States)

^d ROYAL BOTANIC GARDENS   (United Kingdom)

^e UNIVERSITÉ LAVAL   (Canada)

Author keywords

DHPLC; Inga edulis; On farm tree conservation; Peruvian Amazon; SSR

Indexed keywords

AGROFORESTRY; BIODIVERSITY; CONSERVATION GENETICS; EVERGREEN TREE; GENETIC DIFFERENTIATION; NATIVE SPECIES; SPECIES CONSERVATION;

AMAZONIA; PERU; SOUTH AMERICA;

INGA EDULIS;

EID: 43349106930     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-007-9348-5     Document Type: Article

References (51)

1. Adin A, Weber JC, Sotelo Montes C, Vidaurre H, Vosman B, Smulders MJM (2004) Genetic differentiation and trade among populations of peach palm (Bactris gasipaes Kunth) in the Peruvian Amazon - implications for genetic resource management. Theor Appl Genet 108:1564-1573
2. Boshier DH (2000) Mating systems. In: Young A, Boshier D, Boyle T (eds) Forest conservation genetics: principles and practice. CSIRO Publishing, Melbourne, Australia, pp 63-79
3. Brodie AW, Labarta-Chávarri RA, Weber JC (1997) Tree germplasm management and use on-farm in the Peruvian Amazon: a case study from the Ucayali Region, Peru. Research report. Overseas Development Institute, London, United Kingdom and International Centre for Research in Agroforestry, Nairobi, Kenya
4. Clement CR (1989) A center of crop genetic diversity in western Amazonia. BioScience 39:624-631
5. Clement CR (1999) 1492 and the loss of Amazonian crop genetic resources. I. The relation between domestication and human population decline. Econ Bot 53:188-202
6. Clement CR, Villachica H (1994) Amazonian fruits and nuts: potential for domestication in various agroecosystems. In: Leakey RRB, Newton AC (eds) Tropical trees: the potential for domestication and the rebuilding of forest resources. HMSO, London, UK, pp 230-238
7. Clement CR, Aradhya MK, Manshardt RM (1997) Allozyme variation in spineless pejibaye (Bactris gasipaes Palmae). Econ Bot 51:149-157
8. Dawson IK, Simons AJ, Waugh R, Powell W (1996) Detection and pattern of interspecific hybridisation between Gliricidia sepium and G. maculata in Meso-America revealed by PCR-based assays. Mol Ecol 5:89-98
9. Doyle JJ, Doyle JL (1987) CTAB DNA extraction in plants. Phytochem Bull 19:11-15
10. Emmerson P, Maynard J, Jones S, Butler R, Sampson JR, Cheadle JP (2003) Characterizing mutations in samples with low-level mosaicism by collection and analysis of DHPLC fractionated heteroduplexes. Hum Mutat 21:112-115
11. FAO (2001) Global forest resource assessment 2000. Main report. FAO Forestry Paper 140. Food and Agriculture Organization, Rome, Italy
12. Goudet J (2002) FSTAT, a program to estimate and test gene diversities and fixation indices, version 2.9.3.2. Available at: http://www2.unil.ch/izea/ softwares/fstat.html
13. Hammer O, Harper DAT, Ryan PD (2002) PAST - palaeontological statistics, version 0.82. Palaeontological Museum, University of Oslo, Oslo, Norway
14. Hollingsworth PM, Dawson IK, Goodall-Copestake WP, Richardson JE, Weber JC, Sotelo Montes C, Pennington RT (2005) Do farmers reduce genetic diversity when they domesticate tropical trees? A case study from Amazonia. Mol Ecol 14:497-501
15. Jamnadass R, Hanson J, Poole J, Hanotte O, Simons AJ, Dawson IK (2005) High differentiation among populations of the woody legume Sesbania sesban in sub-Saharan Africa: implications for conservation and cultivation during germplasm introduction into agroforestry systems. For Ecol Manage 210:225-238
16. Jana S, Pietzrak LN (1988) Comparative assessment of genetic diversity in wild and primitive cultivated barley in a centre of diversity. Genetics 119:981-990
17. Jin L, Underhill PA, Doctor V, Davis RW, Shen P, Cavalli-Sforza LL, Oefner PJ (1999) Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations. Proc Natl Acad Sci USA 96:3796-3800
18. Kindt R (2002) Methodology for tree species diversification planning in African agro-ecosystems. PhD Thesis, University of Gent, Gent, Belgium
19. Kindt R, Lengkeek AG (1999) Tree diversity on farm - use it or lose it. In: Agricultural biodiversity conservation. Intermediate Technology Development Group East Africa, Nairobi, Kenya, pp 75-85
20. Koptur S (1984) Outcrossing and pollinator limitation on fruit set: breeding systems of neotropical Inga trees (Fabaceae: Mimosoideae). Evolution 38:1130-1143
21. Kota R, Wolf M, Michalek W, Graner A (2001) Application of denaturing high-performance liquid chromatography for mapping of single nucleotide polymorphisms in barley (Hordeum vulgare L). Genome 44:523-528
22. Lengkeek AG (2003) Diversity makes a difference: farmers managing inter- and intra-specific tree species diversity in Meru Kenya. PhD Thesis, Wageningen University, Wageningen, The Netherlands
23. Lengkeek AG, Dawson IK, Jaenicke H (2005) Genetic bottlenecks in agroforestry systems: results of tree nursery surveys in East Africa. Agroforest Syst 63:149-155
24. Lentz DL (2000) Anthropocentric food webs in the Precolumbian Americas. In: Lentz DL (ed) Imperfect balance: landscape transformations in the pre-Columbian Americas. Historical ecology series. Columbia University Press, New York, USA, pp 89-119
25. León J (1998) History of the utilization of Inga as fruit trees in Mesoamerica and Peru. In: Pennington TD, Fernandes ECM (eds) The genus Inga: utilization. The Royal Botanic Gardens, Kew, London, United Kingdom, pp 5-13
26. McBreen K, Cruzan MB (2004) A case of recent long-distance dispersal in the Piriqueta caroliniana complex. J Hered 95:356-361
27. McCauley DE (1994) Contrasting the contribution of chloroplast DNA and allozyme polymorphism among local populations of Silene alba: implications for studies of gene flow in plants. Proc Natl Acad Sci USA 91:8127-8131
28. Miller RP, Nair PKR (2006) Indigenous agroforestry systems in Amazonia: from prehistory to today. Agroforest Syst 66:151-164
29. Miller A, Schaal B (2005) Domestication of a Mesoamerican cultivated fruit tree, Spondias purpurea. Proc Natl Acad Sci USA 102:12801-12806
30. Miller AJ, Schaal BA (2006) Domestication and the distribution of genetic variation in wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea L. (Anacardiaceae). Mol Ecol 15:1467-1480
31. Mora-Urpí J, Weber JC, Clement CR (1997) Peach palm. Bactris gasipaes Kunth. Promoting the conservation and use of underutilized and neglected crops, No. 20. Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany and International Plant Genetic Resources Institute, Rome, Italy
32. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
33. Oefner PJ, Underhill PA (1998) DNA mutation detection using denaturing high-performance liquid chromatography (DHPLC). In: Dracopoli NC, Haines JL, Korf BR et al (eds) Current protocols in human genetics, supplement 19. Wiley and Sons, New York, USA, pp 7.10.1-7.10.2
34. Olsen KM (2004) SNPs, SSRs and inferences on cassava's origin. Plant Mol Biol 56:517-526
35. Olsen KM, Schaal BA (2001) Microsatellite variation in cassava (Manihot esculenta, Euphorbiaceae) and its wild relatives: further evidence for a southern Amazonian origin of domestication. Am J Bot 88:131-142
36. O'Neill GA, Dawson IK, Sotelo-Montes C, Guarino L, Guariguata M, Current D, Weber JC (2001) Strategies for genetic conservation of trees in the Peruvian Amazon. Biodiver Conserv 10:837-850
37. Pennington TD (1997) The genus Inga. The Royal Botanic Gardens, Kew, London, United Kingdom
38. Pennington TD (1998) Inga management. In: Pennington TD, Fernandes ECM (eds) The genus Inga: utilization. The Royal Botanic Gardens, Kew, London, United Kingdom, pp 159-167
39. Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D, Vendramin GG (2005) Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol Ecol 14:689-701
40. Reynel C, Pennington RT, Pennington TD, Flores C, Daza A (2003) Arboles útiles de la Amazonía Peruana: un manual con apuntes de identificación, ecología y propagación de las especies. Universidad Nacional Agraria La Molina, Lima, Perú
41. Richardson JE, Pennington RT, Pennington TD, Hollingsworth PM (2001) Rapid diversification of a species-rich genus of neotropical rain forest trees. Science 293:2242-2245
42. Rodrigues DP, Astolfi Filho S, Clement CR (2004) Molecular marker-mediated validation of morphologically defined landraces of Pejibaye (Bactris gasipaes) and their phylogenetic relationships. Genet Res Crop Evol 51:871-882
43. Schneider S, Roessli D, Excoffier L (2000) Arlequin, version 2.000: a software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland
44. Simons AJ, MacQueen DJ, Stewart JL (1994) Strategic concepts in the domestication of non-industrial trees. In: Leakey RRB, Newton AC (eds) Tropical trees: the potential for domestication and the rebuilding of forest resources. HMSO, London, United Kingdom, pp 91-102
45. Simons AJ, Jaenicke H, Tchoundjeu Z, Dawson I, Kindt R, Oginosako Z, Lengkeek A, De Grande A (2000) The future of trees is on farm: tree domestication in Africa. In: Krishnapillay B, Soepadmo E, Lotfy Arshad N et al (eds) Forests and society: the role of research, sub-plenary sessions, 1. Proceedings of the XXIst IUFRO World Congress. IUFRO Secretariat, Vienna, Austria and the Forest Research Institute Malaysia, Kuala Lumpur, Malaysia, pp 752-760
46. Sotelo Montes C, Weber JC (1997) Priorización de especies arbóreas para sistemas agroforestales en la selva baja del Perú. Agroforest Amér 4:12-17
47. Weber JC, Labarta Chávarri RL, Sotelo Montes C, Brodie AW, Cromwell E, Schreckenberg K, Simons AJ (1997) Farmers' use and management of tree germplasm: case studies from the Peruvian Amazon Basin. In: Simons AJ, Kindt R, Place F (eds) Policy aspects of tree germplasm demand and supply, proceedings of an international workshop. International Centre for Research in Agroforestry, Nairobi, Kenya, pp 57-63
48. Weber JC, Sotelo-Montes C, Vidaurre H, Dawson IK, Simons AJ (2001) Participatory domestication of agroforestry trees: an example from the Peruvian Amazon. Dev Prac 11:425-433
49. Williams DA, Overholt WA, Cuda JP, Hughes CR (2005) Chloroplast and microsatellite DNA diversities reveal the introduction history of Brazilian peppertree (Schinus terebinthifolius) in Florida. Mol Ecol 14:3643-3656
50. Yeh FC, Yang R-C, Boyle T (1999) POPGENE, version 1.31. University of Alberta, Alberta, Canada
51. Zhang D-X, Hewitt GM (2003) Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol Ecolgy 12:563-584