Mapping the continuous reciprocal space intensity distribution of X-ray serial crystallography

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 369, Issue 1647, 2014, Pages

  Yefanov, Oleksandr ^a   Gati, Cornelius ^a   Bourenkov, Gleb ^b   Kirian, Richard A ^a   White, Thomas A ^a   Spence, John C H ^c   Chapman, Henry N ^a,d   Barty, Anton ^a  

^a DESY   (Germany)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c ARIZONA STATE UNIVERSITY   (United States)

^d UNIVERSITY OF HAMBURG   (Germany)

Author keywords

Free electron laser; Serial crystallography; Three dimensional diffraction

Indexed keywords

ASYMMETRY; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DATA ACQUISITION; IONIZATION; LIGHT EFFECT;

CONFORMATION; ELECTRON; LASER; PROCEDURES; THREE DIMENSIONAL IMAGING; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

CRYSTALLOGRAPHY, X-RAY; ELECTRONS; IMAGING, THREE-DIMENSIONAL; LASERS; MOLECULAR CONFORMATION; X-RAY DIFFRACTION;

EID: 84902668992     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2013.0333     Document Type: Article

References (33)

1. Redecke L et al. 2013 Natively inhibited Trypanosoma brucei cathepsin B structure determined by using an X-ray laser. Science 339, 227-230. (doi: 10. 1126/science. 1229663).
2. Chapman HN et al. 2006 High-resolution ab initio three-dimensional X-ray diffraction microscopy. J. Opt. Soc. Am. A 23, 1179-1200. (doi: 10. 1364/JOSAA. 23. 001179).
3. Neutze R, Wouts R, van der Spoel D, Weckert E, Hajdu J. 2000 Potential for biomolecular imaging with femtosecond X-ray pulses. Nature 406, 752-757. (doi: 10. 1038/35021099).
4. Chapman HN, Caleman C, Timneanu N. 2014 Diffraction before destruction. Phil. Trans. R. Soc. B 369, 20130313. (doi: 10. 1098/rstb. 2013. 0313).
5. Chapman HN et al. 2011 Femtosecond X-ray protein nanocrystallography. Nature 470, 73-77. (doi: 10. 1038/nature09750).
6. Boutet S et al. 2012 High-resolution protein structure determination by serial femtosecond crystallography. Science 337, 362-364. (doi: 10. 1126/science. 1217737).
7. White TA, Kirian RA, Martin AV, Aquila A, Nass K, Barty A, Chapman HN. 2012 CRYSTFEL: a software suite for snapshot serial crystallography. J Appl. Crystallogr. 45, 335-341. (doi: 10. 1107/S00218 89812002312).
8. Spence JCH, Weierstall U, Chapman HN. 2012 X-ray lasers for structural and dynamic biology. Rep. Prog. Phys. 75, 102601. (doi: 10. 1088/0034-4885/75/10/102601).
9. Aquila A et al. 2012 Time-resolved protein nanocrystallography using an X-ray free-electron laser. Opt. Express 20, 2706-2716. (doi: 10. 1364/OE. 20. 002706).
10. Spence JCH et al. 2011 Phasing of coherent femtosecond X-ray diffraction from size-varying nanocrystals. Opt. Express 19, 2866-2873. (doi: 10. 1364/OE. 19. 002866).
11. Dilanian RA, Streltsov VA, Quiney HM, Nugent KA. 2012 Continuous X-ray diffractive field in protein nanocrystallography. Acta Crystalogr. A69, 108-118. (doi: 10. 1107/S0108767312042535).
12. Kirian RA et al. 2010 Femtosecond protein nanocrystallography-data analysis methods. Opt. Express 18, 5713-5723. (doi: 10. 1364/OE. 18. 005713).
13. Sayre D. 1952 Some implications of a theorem due to Shannon. Acta Crystallogr. 5, 843. (doi: 10. 1107/S0365110X52002276).
14. Elser V. 2013 Research papers: direct phasing of nanocrystal diffraction. Acta Crystallogr. A69, 559-569. (doi: 10. 1107/S0108767313023362).
15. Loh N-TD, Elser V. 2009 Reconstruction algorithm for single-particle diffraction imaging experiments. Phys. Rev. E 80, 026705. (doi: 10. 1103/PhysRevE. 80. 026705).
16. Giannakis D, Schwander P, Ourmazd A. 2012 The symmetries of image formation by scattering. I. Theoretical framework. Opt. Express 20, 12 799-12 826. (doi: 10. 1364/OE. 20. 012799).
17. Tegze M, Bortel G. 2012 Atomic structure of a single large biomolecule from diffraction patterns of random orientations. J. Struct. Biol. 179, 41-45. (doi: 10. 1016/j. jsb. 2012. 04. 014).
18. Yefanov OM, Vartanyants IA. 2013 Orientation determination in single-particle X-ray coherent diffraction imaging experiments. J. Phys. B 46, 164013. (doi: 10. 1088/0953-4075/46/16/164013).
19. Powell HR. 1999 The Rossmann Fourier autoindexing algorithm in MOSFLM. Acta Crystallogr. D Biol. Crystallogr. 55, 1690-1695. (doi: 10. 1107/S0907444999009506).
20. Kabsch W. 2010 XDS. Acta Crystallogr. D Biol. Crystallogr. 66, 125-132. (doi: 10. 1107/S0907444909047337).
21. Fung R, Shneerson V, Saldin DK, Ourmazd A. 2008 Structure from fleeting illumination of faint spinning objects in flight. Nat. Phys. 5, 64-67. (doi: 10. 1038/nphys1129).
22. Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H. 2010 Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy. Nature 466, 329-333. (doi: 10. 1038/nature09206).
23. Yefanov OM, Zozulya AV, Vartanyants IA, Stangl J, Mocuta C, Metzger TH, Bauer G, Boeck T, Schmidbauer M. 2009 Coherent diffraction tomography of nanoislands from grazing-incidence small-angle X-ray scattering. Appl. Phys. Lett. 94, 123104. (doi: 10. 1063/1. 3103246).
24. Rossmann MG. 1979 Processing oscillation diffraction data for very large unit cells with an automatic convolution technique and profile fitting. J. Appl. Crystallogr. 12, 225-238. (doi: 10. 1107/S0021889879012218).
25. Boutet S, Williams GJ. 2010 The coherent X-ray imaging (CXI) instrument at the Linac Coherent Light Source (LCLS). New J. Phys. 12, 035024. (doi: 10. 1088/1367-2630/12/3/035024).
26. Karplus PA, Diederichs K. 2012 Linking crystallographic model and data quality. Science 336, 1030-1033. (doi: 10. 1126/science. 1218231).
27. Murshudov GN, Skubák P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA. 2011 REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr. D Biol. Crystallogr. 67, 355-367. (doi: 10. 1107/S0907444911001314).
28. Emsley P, Lohkamp B, Scott WG, Cowtan K. 2010 Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501. (doi: 10. 1107/S0907444910007493).
29. Leslie AGW. 2005 The integration of macromolecular diffraction data. Acta Crystallogr. D Biol. Crystallogr. 62, 48-57. (doi: 10. 1107/S0907444905039107).
30. Rossmann MG, Erickson JW. 1983 Oscillation photography of radiation-sensitive crystals using a synchrotron source. J. Appl. Crystallogr. 16, 629-636. (doi: 10. 1107/S002188988 301119X).
31. Rossmann MG, Leslie AG, Abdel-Meguid SS, Tsukihara T. 1979 Processing and post-refinement of oscillation camera data. J. Appl. Crystallogr. 12, 570-581. (doi: 10. 1107/S00218898 79013273).
32. Schwander P, Fung R, Phillips Jr GN, Ourmazd A. 2010 Mapping the conformations of biological assemblies. New J. Phys. 12, 035007. (doi: 10. 1088/1367-2630/12/3/035007).
33. Williams G, Pfeifer M, Vartanyants I, Robinson I. 2003 Three-dimensional imaging of microstructure in Au nanocrystals. Phys. Rev. Lett. 90, 175501. (doi: 10. 1103/PhysRevLett. 90. 175501).