Dispersal capacity predicts both population genetic structure and species richness in reef fishes

American Naturalist

Volumn 184, Issue 1, 2014, Pages 52-64

  Riginos, Cynthia ^a   Buckley, Yvonne M ^a,b   Blomberg, Simon P ^a   Treml, Eric A ^a,c  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b TRINITY COLLEGE DUBLIN   (Ireland)

^c UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

Dispersal; Diversification; Key innovation; Life history traits; Planktonic larvae; Population genetic structure; Species richness

Indexed keywords

DISPERSAL; FISH; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; LARVA; PARENTAL INVESTMENT; PHYLOGENETICS; REEF; SPECIATION (BIOLOGY); SPECIES RICHNESS;

ANIMAL; ANIMAL DISPERSAL; CORAL REEF; EVOLUTION; FISH; GENETICS; LARVA; PHYLOGENY; POPULATION GENETICS; REPRODUCTION;

ANIMAL DISTRIBUTION; ANIMALS; BIOLOGICAL EVOLUTION; CORAL REEFS; FISHES; GENETICS, POPULATION; LARVA; PHYLOGENY; REPRODUCTION;

EID: 84902665806     PISSN: 00030147     EISSN: None     Source Type: Journal    
DOI: 10.1086/676505     Document Type: Article

References (90)

1. Arnold, R. J. 2010. Evolutionary history of the teleost family Antennariidae (order Lophiiformes): evidence from DNA, reproduction, and geographic distribution, with notes on conservation implications. MSc thesis. University of Washington.
2. Barraclough, T. G., and V. Savolainen. 2001. Evolutionary rates and species diversity in flowering plants. Evolution 55:677-683.
3. Belliure, J., G. Sorci, A. P. Møller, and J. Clobert. 2000. Dispersal distances predict subspecies richness in birds. Journal of Evolutionary Biology 13:480-487.
4. Betancur R. R., R. E. Broughton, E. O. Wiley, K. Carpenter, J. A. López, C. Li, N. I. Holcroft, et al. 2013. The tree of life and a new classification of bony fishes. PLoS Currents Tree of Life. Accessed April 18, 2013, edition 1. doi:10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288.
5. Bilton, D. T., J. R. Freeland, and B. Okamura. 2001. Dispersal in freshwater invertebrates. Annual Review of Ecology and Systematics 32:159-181.
6. Blomberg, S. P., J. G. Lefevre, J. A. Wells, and M. Waterhouse. 2012. Independent contrasts and PGLS regression estimators are equivalent. Systematic Biology 61:382-391.
7. Bohonak, A. J. 1999. Dispersal, gene flow, and population structure. Quarterly Review of Biology 74:21-45.
8. Bolmgren, K., and O. Eriksson. 2005. Fleshy fruits: origins, niche shifts, and diversification. Oikos 109:255-272.
9. Bradbury, I. R., B. Laurel, P. V. R. Snelgrove, P. Bentzen, and S. E. Campana. 2008. Global patterns in marine dispersal estimates: the influence of geography, taxonomic category and life history. Proceedings of the Royal Society B: Biological Sciences 275:1803-1809.
10. Burney, C. W., and R. T. Brumfield. 2009. Ecology predicts levels of genetic differentiation in Neotropical birds. American Naturalist 174:358-368.
11. Claramunt, S., E. P. Derryberry, J. V. Remsen, and R. T. Brumfield. 2012. High dispersal ability inhibits speciation in a continental radiation of passerine birds. Proceedings of the Royal Society B: Biological Sciences 279:1567-1574.
12. Clutton-Brock, T. H., and D. Lukas. 2012. The evolution of social philopatry and dispersal in female mammals. Molecular Ecology 21:472-492.
13. Cowen, R. K., and S. Sponaugle. 1997. Relationships between early life history traits and recruitment among coral reef fishes. Pages 421-449 in R. Chambers and E. A. Trippel, eds. Early life history and recruitment in fish populations. Chapman & Hall, London.
14. Coyne, J. A., and H. A. Orr. 2004. Speciation. Sinauer, Sunderland, MA.
15. Dawson, M. N., C. G. Hays, R. K. Grosberg, and P. T. Raimondi. Forthcoming. Dispersal potential and population genetic structure in the marine intertidal of the eastern North Pacific. Ecological Monographs. http://dx.doi.org/10.1890/13-0871.1.
16. Dobzhansky, T. 1940. Speciation as a stage in evolutionary divergence. American Naturalist 74:312-321.
17. Dodd, M. E., J. Silvertown, and M. W. Chase. 1999. Phylogenetic analysis of trait evolution and species diversity variation among angiosperm families. Evolution 53:732-744.
18. Duchene, D., and L. Bromham. 2013. Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae. BMC Evolutionary Biology 13:65.
19. Duminil, J., S. Fineschi, A. Hampe, P. Jordano, D. Salvini, G. G. Vendramin, and R. J. Petit. 2007. Can population genetic structure be predicted from life-history traits? American Naturalist 169:662-672.
20. Eo, S. H., and J. A. DeWoody. 2010. Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles. Proceedings of the Royal Society B: Biological Sciences 277:3587-3592.
21. Eriksson, O., and B. Bremer. 1992. Pollination systems, dispersal modes, life forms, and diversification rates in angiosperm families. Evolution 46:258-266.
22. Eschmeyer, W. N., and J. D. Fong. 2009. Species of fishes by family/subfamily. Version December 1, 2009. http://research.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp.
23. Felsenstein, J. 1993. PHYLIP (phylogeny inference package), version 3.573c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
24. Garland, T., Jr., and R. Díaz-Uriarte. 1999. Polytomies and phylogenetically independent contrasts: examination of the bounded degrees of freedom approach. Systematic Biology 48:547-558.
25. Garland, T., Jr., A. W. Dickerman, C. M. Janis, and J. A. Jones. 1993. Phylogenetic analysis of covariance by computer simulation. Systematic Biology 42:265-292.
26. Gaston, K. J., and S. L. Chown. 1999. Geographic range size and speciation. Pages 236-259 in A. E. Magurran and R. M. May, eds. Evolution of biological diversity. Oxford University Press, Oxford.
27. Givnish, T. J. 2010. Ecology of plant speciation. Taxon 59:1326-1366.
28. Grafen, A. 1989. The phylogenetic regression. Philosophical Transactions of the Royal Society B: Biological Sciences 326:119-154.
29. Greenwood, P. J. 1980. Mating systems, philopatry and dispersal in birds and mammals. Animal Behaviour 28:1140-1162.
30. Hamrick, J. L., and M. J. W. Godt. 1996. Effects of life history traits on genetic diversity in plant species. Philosophical Transactions of the Royal Society B: Biological Sciences 351:1291-1298.
31. Hansen, T. A. 1980. Influence of larval dispersal and geographic distribution on species longevity in neogastropods. Paleobiology 6:193-207.
32. Harmon, L. J., J. T. Weir, C. D. Brock, R. E. Glor, and W. Challenger. 2008. Geiger: investigating evolutionary raditaions. Bioinformatics 24:129-131. http://cran.r-project.org/web/packages/geiger/index.html.
33. Heard, S. B., and D. L. Hauser. 1995. Key evolutionary innovations and their ecological mechanisms. Historical Biology 10:151-173.
34. Helfmann, G. S., B. B. Collette, D. E. Facey, and B. W. Bowen. 2009. The diversity of fishes. Wiley-Blackwell, Hoboken, NJ.
35. Isaac, J. B., P.-M. Apagow, P. H. Harvey, and A. Purvis. 2003. Phylogenetically nested comparisons for testing correlates of species richness: a simulation study of continuous variables. Evolution 57: 18-26.
36. Ives, A. R., and T. Garland Jr. 2010. Phylogenetic logistic regression for binary dependent variables. Systematic Biology 59:9-26.
37. Jablonski, D. 1986. Larval ecology and macroevolution in marine invertebrates. Bulletin of Marine Science 39:565-587.
38. Jablonski, D. 1987. Heritability at the species level: analysis of geographic ranges of Cretaceous mollusks. Science 238:360-363.
39. Jablonski, D. 2008. Species selection: theory and data. Annual Review of Ecology Evolution and Systematics 39:501-524.
40. Jablonski, D., and G. Hunt. 2006. Larval ecology, geographic range, and species survivorship in Cretaceous mollusks: organismic versus species-level explanations. American Naturalist 168:556-564.
41. Jablonski, D., and K. Roy. 2003. Geographical range and speciation in fossil and living molluscs. Proceedings of the Royal Society B: Biological Sciences 270:401-406.
42. Kelly, R. P., and S. R. Palumbi. 2010. Genetic structure among 50 species of the northeastern Pacific rocky intertidal community. PLoS ONE 5:e8594.
43. Kisel, A. C. Moreno-Letelier, D. Bogarín, M. P. Powell, M. W. Chase, and T. G. Barraclough. 2012. Testing the link between population genetic differentiation and clade diversification in Costa Rican orchids. Evolution 66:3035-3052.
44. Kisel, Y., and T. G. Barraclough. 2010. Speciation has a spatial scale that depends on levels of gene flow. American Naturalist 175:316-334.
45. Lanfear, R., S. Y. W. Ho, D. Love, and L. Bromham. 2010. Mutation rate is linked to diversification in birds. Proceedings of theNational Academy of Sciences of the USA 107:20423-20428.
46. Larkin, M. A., G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, et al. 2007. ClustalWand Clustal X, version 2.0. Bioinformatics 23:2947-2948.
47. Leis, J. M. 1991. The pelagic stage of reef fishes: the larval biology of coral reef fishes. Pages 183-230 in P. F. Sale, ed. The ecology of fishes on coral reefs. Academic Press, San Diego, CA.
48. Leis, J. M., and J. M. Miller. 1976. Offshore distributional patterns of Hawaiian fish larvae. Marine Biology 36:359-367.
49. Leis, J. M., T. Trnski, P. J. Doherty, and V. Dufour. 1998. Replenishment of fish populations in the enclosed lagoon of Taiaro Atoll: (Tuamotu Archipelago, French Polynesia) evidence from eggs and larvae. Coral Reefs 17:1-8.
50. Leis, J. M., T. Trnski, V. Dufour, M. Harmelin-Vivien, J.-P. Renon, and R. Galzin. 2003. Local completion of the pelagic larval stage of coastal fishes in coral-reef lagoons of the Society and Tuamotu Islands. Coral Reefs 22:271-290.
51. Lengyel, S., A. D. Gove, A. M. Latimer, J. D. Majer, and R. R. Dunn. 2009. Ants sow the seeds of global diversification in flowering plants. PLoS ONE 4:e5480.
52. Li, B., A. Dettaï, C. Cruaud, A. Couloux, M. Desoutter-Meniger, and G. Lecointre. 2009. RNF213, a new nuclear marker for acanthomorph phylogeny. Molecular Phylogenetics and Evolution 50:345-363.
53. Li, W.-H., and M. Nei. 1975. Drift variances of heterozygosity and genetic distance in transient states. Genetic Research 25:220-248.
54. Loveless, M. D., and J. L. Hamrick. 1984. Ecological determinants of genetic structure in plant populations. Annual Review of Ecology and Systematics 15:65-95.
55. Marie Curie Speciation Network. 2012. What do we need to know about speciation? Trends in Ecology and Evolution 27:27-39.
56. Mayr, E. 1963. Animal species and evolution. Harvard University Press, Cambridge, MA.
57. Near, T. J., A. Dornburg, R. I. Eytan, B. P. Keck, W. L. Smith, K. L. Kuhn, J. A. Moore, et al. 2013. Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes. Proceedings of the National Academy of Sciences of the USA 110:12738-12743.
58. Nelson, J. S. 1994. Fishes of the world. Wiley, New York.
59. Owens, I. P. F., P. M. Bennett, and P. H. Harvey. 1999. Species richness among birds: body size, life history, sexual selection or ecology? Proceedings of the Royal Society B: Biological Sciences 266:933-939.
60. Pagel, M. 1999. The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Systematic Biology 48:612-622.
61. Paradis, E., and J. Claude. 2002. Analysis of comparative data using generalized estimating equations. Journal of Theoretical Biology 218:175-185.
62. Paradis, E., J. Claude, and K. Strimmer. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290.
63. Paulay, G., and C. Meyer. 2006. Dispersal and divergence across the greatest ocean region: do larvae matter? Integrative and Comparative Biology 46:269-281.
64. Phillimore, A. B., R. P. Freckleton, C. D. L. Orme, and I. P. F. Owens. 2006. Ecology predicts large-scale patterns of phylogenetic diversification in birds. American Naturalist 168:220-229.
65. Price, J. P., and W. L. Wagner. 2004. Speciation in Hawaiian angiosperm lineages: cause, consequence, and mode. Evolution 58:2185-2200.
66. Purvis, A., and T. Garland Jr. 1993. Polytomies in comparative analyses of continuous characters. Systematic Biology 42:569-575.
67. R Development Core Team. 2009. R: a language and environment for statistical computing. Ver. 2.10.1. R Foundation for Statistical Computing, Vienna. http://www.R-project.org.
68. Rabosky, D. L. 2009. Ecological limits on clade diversification in higher taxa. American Naturalist 173:662-674.
69. Revell, L. J. 2010. Phylogenetic signal and linear regression on species data. Methods in Ecology and Evolution 1:319-329.
70. Ricklefs, R. E. 2007. History and diversity: explorations at the intersection of ecology and evolution. American Naturalist 170(suppl.):S56-S70.
71. Riginos, C., Y. M. Buckley, S. P. Blomberg, and E. A. Treml. 2014. Data from: Dispersal capacity predicts both population genetic structure and species richness in reef fishes. American Naturalist, Dryad Digital Repository, http://dx.doi.org/10.5061/dryad.522cm.
72. Riginos, C., K. E. Douglas, Y. Jin, D. F. Shanahan, and E. A. Treml. 2011. Effects of geography and life history traits on genetic differentiation in benthic marine fishes. Ecography 34:566-575.
73. Ronquist, F., and J. P. Huelsenbeck. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
74. Rosenzweig, M. L. 1995. Species diversity in space and time. Cambridge University Press, Cambridge.
75. Rousset, F. 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145:1219-1228.
76. Sanderson, M. J. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution 19:101-109.
77. Santini, F., L. J. Harmon, G. Carnevale, and M. E. Alfaro. 2009. Did genome duplication drive the origin of teleosts? a comparative study of diversification in ray-finned fishes. BMC Evolutionary Biology 9:194.
78. Selkoe, K. A., and R. J. Toonen. 2011. Marine connectivity: a new look at pelagic larval duration and genetic metrics of dispersal. Marine Ecology Progress Series 436:291-305.
79. Slatkin, M. 1987. Gene flow and the geographic structure of natural populations. Science 236:787-792.
80. Smith, J. F. 2001. High species diversity in fleshy-fruited tropical understory plants. American Naturalist 157:646-653.
81. Smith, W. L., and M. T. Craig. 2007. Casting the percomorph net widely: the importance of broad taxonomic sampling in the search for the placement of serranid and percid fishes. Copeia 2007:35-55.
82. Thresher, R. E. 1984. Reproduction in reef fishes. T. F. H., Neptune City, NJ.
83. Tiffney, B. H., and S. J. Mazer. 1995. Angiosperm growth habit, dispersal and diversification reconsidered. Evolutionary Ecology 9: 93-117.
84. Treml, E. A., J. J. Roberts, Y. Chao, P. N. Halpin, H. P. Possingham, and C. Riginos. 2012. Reproductive output and duration of the pelagic larval stage determine seascape-wide connectivity of marine populations. Integrative and Comparative Biology 52:525-537.
85. Venditti, C., and M. Pagel. 2010. Speciation as an active force in promoting genetic evolution. Trends in Ecology and Evolution 25: 14-20.
86. Waples, R. S. 1998. Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. Journal of Heredity 89:438-450.
87. Webster, A. J., R. J. H. Payne, and M. Pagel. 2003. Molecular phylogenies link rates of evolution and speciation. Science 301:478.
88. Westneat, M.W. 1993. Phylogenetic relationships of the tribe Cheilinini (Labridae: Perciformes). Bulletin of Marine Science 52:351-394.
89. ST doesn't equal 1/(4Nm+1). Heredity 82:117-125.
90. Wright, S. 1931. Evolution in Mendelian populations. Genetics 16: 97-159.