Functional DNA-containing nanomaterials: Cellular applications in biosensing, imaging, and targeted therapy

Accounts of Chemical Research

Volumn 47, Issue 6, 2014, Pages 1891-1901

  Liang, Hao ^a   Zhang, Xiao Bing ^a   Lv, Yifan ^a   Gong, Liang ^a   Wang, Ruowen ^a   Zhu, Xiaoyan ^a   Yang, Ronghua ^a   Tan, Weihong ^a,b  

^a HUNAN UNIVERSITY   (China)

^b University of Florida   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; DNA; GRAPHITE; MAGNETITE NANOPARTICLE; NANOMATERIAL; SINGLE STRANDED DNA;

CATALYSIS; CHEMISTRY; COLORIMETRY; DIAGNOSTIC IMAGING; DRUG DELIVERY SYSTEM; GENETIC PROCEDURES; HUMAN; MOLECULARLY TARGETED THERAPY; NANOTECHNOLOGY; PROCEDURES;

BIOSENSING TECHNIQUES; CARBON; CATALYSIS; COLORIMETRY; DIAGNOSTIC IMAGING; DNA; DNA, SINGLE-STRANDED; DRUG DELIVERY SYSTEMS; GRAPHITE; HUMANS; MAGNETITE NANOPARTICLES; MOLECULAR TARGETED THERAPY; NANOSTRUCTURES; NANOTECHNOLOGY;

EID: 84902594395     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/ar500078f     Document Type: Article

References (44)

1. Teller, C.; Willner, I. Functional nucleic acid nanostructures and DNA machines Curr. Opin. Biotechnol. 2010, 21, 376-391
2. Ellington, A. D.; Szostak, J. W. In vitro selection of RNA molecules that bind specific ligands Nature 1990, 346, 818-822
3. Liu, J.; Cao, Z.; Lu, Y. Functional nucleic acid sensors Chem. Rev. 2009, 109, 1948-1998
4. Willner, I.; Zayats, M. Electronic aptamer-based sensors Angew. Chem., Int. Ed. 2007, 46, 6408-6418
5. Eltzov, E.; Cosnier, S.; Marks, R. S. Biosensors based on combined optical and electrochemical transduction for molecular diagnostics Expert Rev. Mol. Diagn. 2011, 11, 533-546
6. 2+ ion as a cofactor for a novel RNA-cleaving deoxyribozyme Angew. Chem., Int. Ed. 1996, 35, 2837-2841
7. Cuenoud, B.; Szostak, J. W. A DNA metalloenzyme with DNA ligase activity Nature 1995, 375, 611-614
8. Li, Y.; Breaker, R. R. Phosphorylating DNA with DNA Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 2746-2751
9. Li, Y.; Sen, D. A catalytic DNA for porphyrin metallation Nat. Struct. Mol. Biol. 1996, 3, 743-747
10. 2+-ligation DNAzyme-driven enzymatic and nonenzymatic cascades for the amplified detection of DNA J. Am. Chem. Soc. 2012, 134, 10651-10658
11. Liu, J.; Brown, A. K.; Meng, X.; Cropek, D. M.; Istok, J. D.; Watson, D. B.; Lu, Y. A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and million fold selectivity Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 2056-2061
12. Mei, S. H.; Liu, Z.; Brennan, J. D.; Li, Y. An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling J. Am. Chem. Soc. 2003, 125, 412-420
13. Santoro, S. W.; Joyce, G. F.; Sakthivel, K.; Gramatikova, S.; Barbas, C. F. RNA cleavage by a DNA enzyme with extended chemical functionality J. Am. Chem. Soc. 2000, 122, 2433-2439
14. Choi, C. H.; Hao, L.; Narayan, S. P.; Auyeung, E.; Mirkin, C. A. Mechanism for the endocytosis of spherical nucleic acid nanoparticle conjugates Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 7625-7630
15. Rosi, N. L.; Giljohann, D. A.; Thaxton, C. S.; Lytton-Jean, A. K.; Han, M. S.; Mirkin, C. A. Oligonucleotide-modified gold nanoparticles for intracellular gene regulation Science 2006, 312, 1027-1030
16. Pavlov, V.; Xiao, Y.; Shlyahovsky, B.; Willner, I. Aptamer-functionalized Au nanoparticles for the amplified optical detection of thrombin J. Am. Chem. Soc. 2004, 126, 11768-11769
17. Slowing, I. I.; Vivero-Escoto, J. L.; Wu, C. W.; Lin, V. S. Y. Mesoporous silica nanoparticles as controlled release drug delivery and gene transfection carriers Adv. Drug Delivery Rev. 2008, 60, 1278-1288
18. Lu, A. H.; Salabas, E. L.; Schüth, F. Magnetic nanoparticles: Synthesis, protection, functionalization, and application Angew. Chem., Int. Ed. 2007, 46, 1222-1244
19. Gao, L.; Cui, Y.; He, Q.; Yang, Y.; Fei, J.; Li, J. Selective recognition of co-assembled thrombin aptamer and docetaxel on mesoporous silica nanoparticles against tumor cell proliferation Chem.-Eur. J. 2011, 17, 13170-13174
20. Lytton-Jean, A. K.; Mirkin, C. A. A thermodynamic investigation into the binding properties of DNA functionalized gold nanoparticle probes and molecular fluorophore probes J. Am. Chem. Soc. 2005, 127, 12754-12755
21. Sheng, W.; Chen, T.; Tan, W.; Fan, Z. H. Multivalent DNA nanospheres for enhanced capture of cancer cells in microfluidic devices ACS Nano 2013, 7, 7067-7076
22. Seferos, D. S.; Prigodich, A. E.; Giljohann, D. A.; Patel, P. C.; Mirkin, C. A. Polyvalent DNA nanoparticle conjugates stabilize nucleic acids Nano Lett. 2009, 9, 308-311
23. Giljohann, D. A.; Seferos, D. S.; Patel, P. C.; Millstone, J. E.; Rosi, N. L.; Mirkin, C. A. Oligonucleotide loading determines cellular uptake of DNA-modified gold nanoparticles Nano Lett. 2007, 7, 3818-3821
24. Yang, R.; Jin, J.; Chen, Y.; Shao, N.; Kang, H.; Xiao, Z.; Tang, Z.; Wu, Y.; Zhu, Z.; Tan, W. Carbon nanotube-quenched fluorescent oligonucleotides: Probes that fluoresce upon hybridization J. Am. Chem. Soc. 2008, 130, 8351-8358
25. Yang, R.; Tang, Z.; Yan, J.; Kang, H.; Kim, Y.; Zhu, Z.; Tan, W. Noncovalent assembly of carbon nanotubes and single-stranded DNA: An effective sensing platform for probing biomolecular interactions Anal. Chem. 2008, 80, 7408-7413
26. Wang, Y.; Li, Z.; Hu, D.; Lin, C.-T.; Li, J.; Lin, Y. Aptamer/graphene oxide nanocomplex for in situ molecular probing in living cells J. Am. Chem. Soc. 2010, 132, 9274-9276
27. Kim, Y.; Cao, Z.; Tan, W. Molecular assembly for high-performance bivalent nucleic acid inhibitor Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 5664-5669
28. Wu, Y.; Sefah, K.; Liu, H.; Wang, R.; Tan, W. DNA aptamer-micelle as an efficient detection/delivery vehicle toward cancer cells Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 5-10
29. Fan, C.; Wang, S.; Hong, J. W.; Bazan, G. C.; Plaxco, K. W.; Heeger, A. J. Beyond superquenching: Hyper-efficient energy transfer from conjugated polymers to gold nanoparticles Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 6297-6301
30. Zheng, D.; Seferos, D. S.; Giljohann, D. A.; Patel, P. C.; Mirkin, C. A. Aptamer nano-flares for molecular detection in living cells Nano Lett. 2009, 9, 3258-3261
31. Zheng, J.; Zhu, G.; Li, Y.; Li, C.; You, M.; Chen, T.; Song, E.; Yang, R.; Tan, W. A spherical nucleic acid platform based on self-assembled DNA biopolymer for high-performance cancer therapy ACS Nano 2013, 7, 6545-6554
32. Wu, P.; Hwang, K.; Lan, T.; Lu, Y. A DNAzyme-gold nanoparticle probe for uranyl ion in living cells J. Am. Chem. Soc. 2013, 135, 5254-5257
33. Srivastava, S.; Frankamp, B. L.; Rotello, V. M. Controlled plasmon resonance of gold nanoparticles self-assembled with PAMAM dendrimers Chem. Mater. 2005, 17, 487-490
34. Medley, C. D.; Smith, J. E.; Tang, Z.; Wu, Y.; Bamrungsap, S.; Tan, W. Gold nanoparticle-based colorimetric assay for the direct detection of cancerous cells Anal. Chem. 2008, 80, 1067-1072
35. Wang, J.; Sefah, K.; Altman, M. B.; Chen, T.; You, M.; Zhao, Z.; Huang, C. Z.; Tan, W. Aptamer-conjugated nanorods for targeted photothermal therapy of prostate cancer stem cells Chem.-Asian J. 2013, 8, 2417-2422
36. Wang, J.; Zhu, G.; You, M.; Song, E.; Shukoor, M. I.; Zhang, K.; Altman, M. B.; Chen, Y.; Zhu, Z.; Huang, C. Z. Assembly of aptamer switch probes and photosensitizer on gold nanorods for targeted photothermal and photodynamic cancer therapy ACS Nano 2012, 6, 5070-5077
37. Yasun, E.; Gulbakan, B.; Ocsoy, I.; Yuan, Q.; Shukoor, M. I.; Li, C.; Tan, W. Enrichment and detection of rare proteins with aptamer-conjugated gold nanorods Anal. Chem. 2012, 84, 6008-6015
38. 3+ complex and aptamer-wrapped carbon nanotubes Anal. Chem. 2011, 83, 782-789
39. Weissleder, R.; Moore, A.; Mahmood, U.; Bhorade, R.; Benveniste, H.; Chiocca, E. A.; Basilion, J. P. In vivo magnetic resonance imaging of transgene expression Nat. Med. 2000, 6, 351-354
40. Bamrungsap, S.; Chen, T.; Shukoor, M. I.; Chen, Z.; Sefah, K.; Chen, Y.; Tan, W. Pattern recognition of cancer cells using aptamer-conjugated magnetic nanoparticles ACS Nano 2012, 6, 3974-3981
41. Chen, T.; Shukoor, M. I.; Wang, R.; Zhao, Z.; Yuan, Q.; Bamrungsap, S.; Xiong, X.; Tan, W. Smart multifunctional nanostructure for targeted cancer chemotherapy and magnetic resonance imaging ACS Nano 2011, 5, 7866-7873
42. Wu, C.; Han, D.; Chen, T.; Peng, L.; Zhu, G.; You, M.; Qiu, L.; Sefah, K.; Zhang, X.; Tan, W. Building a multifunctional aptamer-based DNA nanoassembly for targeted cancer therapy J. Am. Chem. Soc. 2013, 135, 18644-18650
43. Zhu, G.; Hu, R.; Zhao, Z.; Chen, Z.; Zhang, X.; Tan, W. Noncanonical self-assembly of multifunctional DNA nanoflowers for biomedical applications J. Am. Chem. Soc. 2013, 135, 16438-16445
44. Wu, C.; Chen, T.; Han, D.; You, M.; Peng, L.; Cansiz, S.; Zhu, G.; Li, C.; Xiong, X.; Jimenez, E. Engineering of switchable aptamer micelle flares for molecular imaging in living cells ACS Nano 2013, 7, 5724-5731