메뉴 건너뛰기




Volumn 23, Issue 12, 2014, Pages 2975-2987

New insights into the evolutionary history of Plasmodium falciparum from mitochondrial genome sequence analyses of Indian isolates

Author keywords

evolutionary history; India; mitochondrial genome; Plasmodium falciparum; single nucleotide polymorphisms

Indexed keywords

PLASMODIUM FALCIPARUM; PRIMATES;

EID: 84902544507     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12800     Document Type: Article
Times cited : (14)

References (58)
  • 1
    • 1442300135 scopus 로고    scopus 로고
    • Plasmodium falciparum isolates in India exhibit a progressive increase in mutations associated with sulfadoxine-pyrimethamine resistance
    • Ahmed A, Bararia D, Vinayak S, et al,. (2004) Plasmodium falciparum isolates in India exhibit a progressive increase in mutations associated with sulfadoxine-pyrimethamine resistance. Antimicrobial Agents and Chemotherapy, 48, 879-889.
    • (2004) Antimicrobial Agents and Chemotherapy , vol.48 , pp. 879-889
    • Ahmed, A.1    Bararia, D.2    Vinayak, S.3
  • 2
    • 84870706630 scopus 로고    scopus 로고
    • Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites
    • Amambua-Ngwa A, Tetteh KKA, Manske M, et al,. (2012) Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites. PLoS Genetics, 8, e1002992.
    • (2012) PLoS Genetics , vol.8
    • Amambua-Ngwa, A.1    Tetteh, K.K.A.2    Manske, M.3
  • 3
    • 65449128553 scopus 로고    scopus 로고
    • Mapping the spread of malaria drug resistance
    • Anderson T, (2009) Mapping the spread of malaria drug resistance. PLoS Medicine, 6, e1000054.
    • (2009) PLoS Medicine , vol.6
    • Anderson, T.1
  • 4
    • 84890353889 scopus 로고    scopus 로고
    • Genetics of chloroquine-resistant malaria: A haplotypic view
    • Awasthi G, Das A, (2013) Genetics of chloroquine-resistant malaria: a haplotypic view. Memorias Do Instituto Oswaldo Cruz, 108, 947-961.
    • (2013) Memorias Do Instituto Oswaldo Cruz , vol.108 , pp. 947-961
    • Awasthi, G.1    Das, A.2
  • 5
    • 7244251635 scopus 로고    scopus 로고
    • Chloroquine resistance in Plasmodium vivax
    • Baird JK, (2004) Chloroquine resistance in Plasmodium vivax. Antimicrobial Agents and Chemotherapy, 48, 4075-4083.
    • (2004) Antimicrobial Agents and Chemotherapy , vol.48 , pp. 4075-4083
    • Baird, J.K.1
  • 7
    • 0035793887 scopus 로고    scopus 로고
    • Genetic clues to dispersal in human populations: Retracing the past from the present
    • Cann RL, (2001) Genetic clues to dispersal in human populations: retracing the past from the present. Science, 291, 1742-1748.
    • (2001) Science , vol.291 , pp. 1742-1748
    • Cann, R.L.1
  • 8
    • 84867826577 scopus 로고    scopus 로고
    • Genomic sequencing of Plasmodium falciparum malaria parasites from senegal reveals the demographic history of the population
    • Chang HH, Park DJ, Galinsky KJ, et al,. (2012) Genomic sequencing of Plasmodium falciparum malaria parasites from senegal reveals the demographic history of the population. Molecular Biology and Evolution, 29, 3427-3439.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 3427-3439
    • Chang, H.H.1    Park, D.J.2    Galinsky, K.J.3
  • 9
    • 84887217106 scopus 로고    scopus 로고
    • Analyses of genetic variations at microsatellite loci present in-and-around the Pfcrt gene in Indian Plasmodium falciparum
    • Chauhan K, Pande V, Das A, (2013) Analyses of genetic variations at microsatellite loci present in-and-around the Pfcrt gene in Indian Plasmodium falciparum. Infection, Genetics and Evoluton, 20, 476-487.
    • (2013) Infection, Genetics and Evoluton , vol.20 , pp. 476-487
    • Chauhan, K.1    Pande, V.2    Das, A.3
  • 10
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall K, (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
    • (2000) Molecular Ecology , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 11
  • 12
    • 79851503966 scopus 로고    scopus 로고
    • Sequence analysis of coding DNA fragments of pfcrt and pfmdr-1 genes in Plasmodium falciparum isolates from Odisha, India
    • Das Sutar SK, Gupta B, Ranjit M, Kar SK, Das A, (2011) Sequence analysis of coding DNA fragments of pfcrt and pfmdr-1 genes in Plasmodium falciparum isolates from Odisha, India. Memorias Do Instituto Oswaldo Cruz, 106, 78-84.
    • (2011) Memorias Do Instituto Oswaldo Cruz , vol.106 , pp. 78-84
    • Das Sutar, S.K.1    Gupta, B.2    Ranjit, M.3    Kar, S.K.4    Das, A.5
  • 13
    • 11244264493 scopus 로고    scopus 로고
    • Inferring the population structure and demography of Drosophila ananassae from multilocus data
    • Das A, Mohanty S, Stephan W, (2004) Inferring the population structure and demography of Drosophila ananassae from multilocus data. Genetics, 168, 1975-1985.
    • (2004) Genetics , vol.168 , pp. 1975-1985
    • Das, A.1    Mohanty, S.2    Stephan, W.3
  • 15
    • 84861001803 scopus 로고    scopus 로고
    • Ape Plasmodium parasites as a source of human outbreaks
    • Duval L, Ariey F, (2012) Ape Plasmodium parasites as a source of human outbreaks. Clinical Microbiology and Infection, 18, 528-532.
    • (2012) Clinical Microbiology and Infection , vol.18 , pp. 528-532
    • Duval, L.1    Ariey, F.2
  • 17
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL, (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 18
    • 67649761105 scopus 로고    scopus 로고
    • Genetic polymorphism in msp-2, ama-1 and csp genes in Plasmodium falciparum field isolates from north and north-western India
    • Farooq U, Malla N, Dubey ML, (2009) Genetic polymorphism in msp-2, ama-1 and csp genes in Plasmodium falciparum field isolates from north and north-western India. Journal of Vector Borne Diseases, 46, 109-116.
    • (2009) Journal of Vector Borne Diseases , vol.46 , pp. 109-116
    • Farooq, U.1    Malla, N.2    Dubey, M.L.3
  • 19
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH, (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 20
    • 6444233186 scopus 로고    scopus 로고
    • Origin of agriculture and domestication of plants and animals linked to early Holocene climate amelioration
    • Gupta AK, (2004) Origin of agriculture and domestication of plants and animals linked to early Holocene climate amelioration. Current Science, 87, 54-59.
    • (2004) Current Science , vol.87 , pp. 54-59
    • Gupta, A.K.1
  • 21
    • 84859111268 scopus 로고    scopus 로고
    • Inferring the evolutionary history of Indian Plasmodium vivax from population genetic analyses of multilocus nuclear DNA fragments
    • Gupta B, Srivastava N, Das A, (2012) Inferring the evolutionary history of Indian Plasmodium vivax from population genetic analyses of multilocus nuclear DNA fragments. Molecular Ecology, 21, 1597-1616.
    • (2012) Molecular Ecology , vol.21 , pp. 1597-1616
    • Gupta, B.1    Srivastava, N.2    Das, A.3
  • 22
    • 0028484009 scopus 로고
    • Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution
    • Harpending HC, (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591-600.
    • (1994) Human Biology , vol.66 , pp. 591-600
    • Harpending, H.C.1
  • 23
    • 79953771276 scopus 로고    scopus 로고
    • Highly conserved gene arrangement of the mitochondrial genomes of 23 Plasmodium species
    • Hikosaka K, Watanabe Y-I, Kobayashi F, et al,. (2011) Highly conserved gene arrangement of the mitochondrial genomes of 23 Plasmodium species. Parasitology International, 60, 175-180.
    • (2011) Parasitology International , vol.60 , pp. 175-180
    • Hikosaka, K.1    Watanabe, Y.-I.2    Kobayashi, F.3
  • 24
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson RR, Kaplan NL, (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics, 111, 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 25
    • 0034619822 scopus 로고    scopus 로고
    • Mitochondrial genome variation and the origin of modern humans
    • Ingman M, Kaessmann H, Pääbo S, Gyllensten U, (2000) Mitochondrial genome variation and the origin of modern humans. Nature, 408, 708-713.
    • (2000) Nature , vol.408 , pp. 708-713
    • Ingman, M.1    Kaessmann, H.2    Pääbo, S.3    Gyllensten, U.4
  • 27
    • 34250346968 scopus 로고    scopus 로고
    • Genetic structure of Plasmodium falciparum field isolates in eastern and north-eastern India
    • Joshi H, Valecha N, Verma A, et al,. (2007) Genetic structure of Plasmodium falciparum field isolates in eastern and north-eastern India. Malaria Journal, 6, 60.
    • (2007) Malaria Journal , vol.6 , pp. 60
    • Joshi, H.1    Valecha, N.2    Verma, A.3
  • 28
    • 0037432740 scopus 로고    scopus 로고
    • Early origin and recent expansion of Plasmodium falciparum
    • Joy DA, Feng X, Mu J, et al,. (2003) Early origin and recent expansion of Plasmodium falciparum. Science, 300, 318-321.
    • (2003) Science , vol.300 , pp. 318-321
    • Joy, D.A.1    Feng, X.2    Mu, J.3
  • 29
    • 34547365034 scopus 로고    scopus 로고
    • Genetic diversity and population history of Plasmodium falciparum and Plasmodium vivax
    • Joy DA, Mu J, Jiang H, Su X, (2006) Genetic diversity and population history of Plasmodium falciparum and Plasmodium vivax. Parassitologia, 48, 561-566.
    • (2006) Parassitologia , vol.48 , pp. 561-566
    • Joy, D.A.1    Mu, J.2    Jiang, H.3    Su, X.4
  • 31
    • 77649266431 scopus 로고    scopus 로고
    • On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos
    • Krief S, Escalante AA, Pacheco MA, et al,. (2010) On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos. PLoS Pathogens, 6, e1000765.
    • (2010) PLoS Pathogens , vol.6
    • Krief, S.1    Escalante, A.A.2    Pacheco, M.A.3
  • 32
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 33
    • 77957134091 scopus 로고    scopus 로고
    • Origin of the human malaria parasite Plasmodium falciparum in gorillas
    • Liu W, Li Y, Learn GH, et al,. (2010) Origin of the human malaria parasite Plasmodium falciparum in gorillas. Nature, 467, 420-425.
    • (2010) Nature , vol.467 , pp. 420-425
    • Liu, W.1    Li, Y.2    Learn, G.H.3
  • 34
    • 79957991110 scopus 로고    scopus 로고
    • The transit phase of migration: Circulation of malaria and its multidrug-resistant forms in Africa
    • Lynch C, Roper C, (2011) The transit phase of migration: circulation of malaria and its multidrug-resistant forms in Africa. PLoS Medicine, 8, e1001040.
    • (2011) PLoS Medicine , vol.8
    • Lynch, C.1    Roper, C.2
  • 35
    • 84881234087 scopus 로고    scopus 로고
    • Microsatellite analysis of chloroquine resistance associated alleles and neutral loci reveal genetic structure of Indian Plasmodium falciparum
    • Mallick PK, Sutton PL, Singh R, et al,. (2013) Microsatellite analysis of chloroquine resistance associated alleles and neutral loci reveal genetic structure of Indian Plasmodium falciparum. Infection, Genetics and Evoluton, 19, 164-175.
    • (2013) Infection, Genetics and Evoluton , vol.19 , pp. 164-175
    • Mallick, P.K.1    Sutton, P.L.2    Singh, R.3
  • 36
    • 84863982076 scopus 로고    scopus 로고
    • Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
    • Manske M, Miotto O, Campino S, et al,. (2012) Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature, 487, 375-379.
    • (2012) Nature , vol.487 , pp. 375-379
    • Manske, M.1    Miotto, O.2    Campino, S.3
  • 38
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M, (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature, 351, 652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 39
    • 44449145387 scopus 로고    scopus 로고
    • Discordant patterns of genetic variation at two chloroquine resistance loci in worldwide populations of the malaria parasite Plasmodium falciparum
    • Mehlotra RK, Mattera G, Bockarie MJ, et al,. (2008) Discordant patterns of genetic variation at two chloroquine resistance loci in worldwide populations of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy, 52, 2212-2222.
    • (2008) Antimicrobial Agents and Chemotherapy , vol.52 , pp. 2212-2222
    • Mehlotra, R.K.1    Mattera, G.2    Bockarie, M.J.3
  • 40
    • 0004275709 scopus 로고
    • Columbia University Press, New York City, New York.
    • Nei M, (1987) Molecular Evolutionary Genetics. Columbia University Press, New York City, New York.
    • (1987) Molecular Evolutionary Genetics
    • Nei, M.1
  • 41
    • 0034978958 scopus 로고    scopus 로고
    • Predicting nuclear gene coalenscence from mitochondrial data: The three- times rule
    • Palumbi SR, Cipriano F, Hare MP, (2001) Predicting nuclear gene coalenscence from mitochondrial data: the three- times rule. Evolution, 55, 859-868.
    • (2001) Evolution , vol.55 , pp. 859-868
    • Palumbi, S.R.1    Cipriano, F.2    Hare, M.P.3
  • 42
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • Posada D, (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256.
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 44
    • 79952235617 scopus 로고    scopus 로고
    • A fresh look at the origin of Plasmodium falciparum, the most malignant malaria agent
    • Prugnolle F, Durand P, Ollomo B, et al,. (2011a) A fresh look at the origin of Plasmodium falciparum, the most malignant malaria agent. PLoS Pathogens, 7, e1001283.
    • (2011) PLoS Pathogens , vol.7
    • Prugnolle, F.1    Durand, P.2    Ollomo, B.3
  • 46
  • 47
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending H, (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
    • (1992) Molecular Biology and Evolution , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 49
  • 50
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 51
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, et al,. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3
  • 52
    • 78049530040 scopus 로고    scopus 로고
    • Plasmodium falciparum accompanied the human expansion out of Africa
    • Tanabe K, Mita T, Jombart T, et al,. (2010) Plasmodium falciparum accompanied the human expansion out of Africa. Current Biology, 20, 1283-1289.
    • (2010) Current Biology , vol.20 , pp. 1283-1289
    • Tanabe, K.1    Mita, T.2    Jombart, T.3
  • 53
    • 84895800463 scopus 로고    scopus 로고
    • Whole mitochondrial genome sequence of an Indian Plasmodium falciparum field isolate
    • Tyagi S, Pande V, Das A, (2014a) Whole mitochondrial genome sequence of an Indian Plasmodium falciparum field isolate. Korean Journal of Parasitology, 52, 99-103.
    • (2014) Korean Journal of Parasitology , vol.52 , pp. 99-103
    • Tyagi, S.1    Pande, V.2    Das, A.3
  • 54
    • 84902538690 scopus 로고    scopus 로고
    • Mitochondrial genome sequence diversity of Indian Plasmodium falciparum isolates
    • in press, doi: 10.1590/0074-0276130531.
    • Tyagi S, Pande V, Das A, (2014b) Mitochondrial genome sequence diversity of Indian Plasmodium falciparum isolates. Memorias do Instituto Oswaldo Cruz, 109, in press, doi: 10.1590/0074-0276130531.
    • (2014) Memorias Do Instituto Oswaldo Cruz , vol.109
    • Tyagi, S.1    Pande, V.2    Das, A.3
  • 55
    • 40949091938 scopus 로고    scopus 로고
    • Insertion-deletion polymorphisms (indels) as genetic markers in natural populations
    • Väli Ü, Brandström M, Johansson M, Ellegren H, (2008) Insertion-deletion polymorphisms (indels) as genetic markers in natural populations. BMC Genetics, 9, 8.
    • (2008) BMC Genetics , vol.9 , pp. 8
    • Väli, Ü.1    Brandström, M.2    Johansson, M.3    Ellegren, H.4
  • 56
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA, (1975) On the number of segregating sites in genetical models without recombination. Theoretical Population Biology, 7, 256-276.
    • (1975) Theoretical Population Biology , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 57
    • 33645229840 scopus 로고    scopus 로고
    • Estimating diversifying selection and functional constraint in the presence of recombination
    • Wilson DJ, McVean G, (2006) Estimating diversifying selection and functional constraint in the presence of recombination. Genetics, 172, 1411-1425.
    • (2006) Genetics , vol.172 , pp. 1411-1425
    • Wilson, D.J.1    McVean, G.2
  • 58
    • 84902538691 scopus 로고    scopus 로고
    • World Malaria Report WHO (factsheet)
    • World Malaria Report WHO 2013 (factsheet). Available from http://www.who.int/malaria/media/world-malaria-report-2013/en/index.html.
    • (2013)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.