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Volumn 12, Issue 7, 2014, Pages 493-504

Functional long-range RNA-RNA interactions in positive-strand RNA viruses

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN; VIRUS RNA; MESSENGER RNA;

EID: 84902507049     PISSN: 17401526     EISSN: 17401534     Source Type: Journal    
DOI: 10.1038/nrmicro3288     Document Type: Review
Times cited : (104)

References (98)
  • 1
    • 79952626063 scopus 로고    scopus 로고
    • Subgenomic messenger RNAs: Mastering regulation of (+)-strand RNA virus life cycle
    • Sztuba-Solińska, J., Stollar, V. &Bujarski, J. J. Subgenomic messenger RNAs: mastering regulation of (+)-strand RNA virus life cycle. Virology 412, 245-255 (2011).
    • (2011) Virology , vol.412 , pp. 245-255
    • Sztuba-Solińska, J.1    Stollar, V.2    Bujarski, J.J.3
  • 2
    • 79954510568 scopus 로고    scopus 로고
    • Diverse roles of host RNA binding proteins in RNA virus replication
    • Li, Z. &Nagy, P. D. Diverse roles of host RNA binding proteins in RNA virus replication. RNA Biol. 8, 305-315 (2011).
    • (2011) RNA Biol , vol.8 , pp. 305-315
    • Li, Z.1    Nagy, P.D.2
  • 3
    • 71849107774 scopus 로고    scopus 로고
    • Cis-acting RNA elements in human and animal plus-strand RNA viruses
    • Liu, Y., Wimmer, E. &Paul, A. V. Cis-acting RNA elements in human and animal plus-strand RNA viruses. Biochim. Biophys. Acta 1789, 495-517 (2009).
    • (2009) Biochim. Biophys. Acta , vol.1789 , pp. 495-517
    • Liu, Y.1    Wimmer, E.2    Paul, A.V.3
  • 4
    • 33748945417 scopus 로고    scopus 로고
    • Long-distance RNA-RNA interactions in plant virus gene expression and replication
    • Miller, W. A. &White, K. A. Long-distance RNA-RNA interactions in plant virus gene expression and replication. Annu. Rev. Phytopathol. 44, 447-467 (2006).
    • (2006) Annu. Rev. Phytopathol , vol.44 , pp. 447-467
    • Miller, W.A.1    White, K.A.2
  • 5
    • 81755166232 scopus 로고    scopus 로고
    • 3′cap-independent translation enhancers of positive-strand RNA plant viruses
    • Nicholson, B. L. &White, K. A. 3′cap-independent translation enhancers of positive-strand RNA plant viruses. Curr. Opin. Virol. 1, 373-380 (2011).
    • (2011) Curr. Opin. Virol , vol.1 , pp. 373-380
    • Nicholson, B.L.1    White, K.A.2
  • 6
    • 84884522845 scopus 로고    scopus 로고
    • 3′cap-independent translation enhancers of plant viruses
    • Simon, A. E. &Miller, W. A. 3′cap-independent translation enhancers of plant viruses. Annu. Rev. Microbiol. 67, 21-42 (2013).
    • (2013) Annu. Rev. Microbiol , vol.67 , pp. 21-42
    • Simon, A.E.1    Miller, W.A.2
  • 7
    • 84887155360 scopus 로고    scopus 로고
    • Unmasking the information encoded as structural motifs of viral RNA genomes: A potential antiviral target
    • Romero-López, C. &Berzal-Herranz, A. Unmasking the information encoded as structural motifs of viral RNA genomes: a potential antiviral target. Rev. Med. Virol. 23, 340-354 (2013).
    • (2013) Rev. Med. Virol , vol.23 , pp. 340-354
    • Romero-López, C.1    Berzal-Herranz, A.2
  • 8
    • 0027207557 scopus 로고
    • Translational control by a long range RNA-RNA interaction; A basepair substitution analysis
    • van Himbergen, J., van Geffen, B. &van Duin, J. Translational control by a long range RNA-RNA interaction; a basepair substitution analysis. Nucleic Acids Res. 21, 1713-1717 (1993).
    • (1993) Nucleic Acids Res , vol.21 , pp. 1713-1717
    • Van Himbergen, J.1    Van Geffen, B.2    Van Duin, J.3
  • 9
    • 0032126551 scopus 로고    scopus 로고
    • Long-range translational coupling in single-stranded RNA bacteriophages: An evolutionary analysis
    • Licis, N., van Duin, J., Balklava, Z. &Berzins, V. Long-range translational coupling in single-stranded RNA bacteriophages: an evolutionary analysis. Nucleic Acids Res. 26, 3242-3246 (1998).
    • (1998) Nucleic Acids Res , vol.26 , pp. 3242-3246
    • Licis, N.1    Van Duin, J.2    Balklava, Z.3    Berzins, V.4
  • 10
    • 0028910588 scopus 로고    scopus 로고
    • Secondary structure model for the last two domains of single-stranded RNA phage Qβ
    • Beekwilder, M. J., Nieuwenhuizen, R. &van Duin, J. Secondary structure model for the last two domains of single-stranded RNA phage Qβ. J. Mol. Biol. 247, 903-917 (1996).
    • (1996) J. Mol. Biol , vol.247 , pp. 903-917
    • Beekwilder, M.J.1    Nieuwenhuizen, R.2    Van Duin, J.3
  • 11
    • 0031854886 scopus 로고    scopus 로고
    • A long-range interaction in Qβ RNA that bridges the thousand nucleotides between the M-site and the 3′end is required for replication
    • Klovins, J., Berzins, V. &van Duin, J. A long-range interaction in Qβ RNA that bridges the thousand nucleotides between the M-site and the 3′end is required for replication. RNA 4, 948-957 (1998).
    • (1998) RNA , vol.4 , pp. 948-957
    • Klovins, J.1    Berzins, V.2    Van Duin, J.3
  • 12
    • 84862642115 scopus 로고    scopus 로고
    • Non-canonical translation in RNA viruses
    • Firth, A. E. &Brierley, I. Non-canonical translation in RNA viruses. J. Gen. Virol. 93, 1385-1409 (2012).
    • (2012) J. Gen. Virol , vol.93 , pp. 1385-1409
    • Firth, A.E.1    Brierley, I.2
  • 13
    • 29144502178 scopus 로고    scopus 로고
    • Translational control in positive strand RNA plant viruses
    • Dreher, T. W. &Miller, W. A. Translational control in positive strand RNA plant viruses. Virology 344, 185-197 (2006).
    • (2006) Virology , vol.344 , pp. 185-197
    • Dreher, T.W.1    Miller, W.A.2
  • 15
    • 77953641910 scopus 로고    scopus 로고
    • Tombusvirus recruitment of host translational machinery via the 3′UTR
    • Nicholson, B. L., Wu, B., Chevtchenko, I. &White, K. A. Tombusvirus recruitment of host translational machinery via the 3′UTR. RNA 16, 1402-1419 (2010).
    • (2010) RNA , vol.16 , pp. 1402-1419
    • Nicholson, B.L.1    Wu, B.2    Chevtchenko, I.3    White, K.A.4
  • 16
    • 67649757046 scopus 로고    scopus 로고
    • Structure of a viral cap-independent translation element that functions via high affinity binding to the eIF4E subunit of eIF4F
    • Wang, Z., Treder, K. &Miller, W. A. Structure of a viral cap-independent translation element that functions via high affinity binding to the eIF4E subunit of eIF4F. J. Biol. Chem. 284, 14189-14202 (2009).
    • (2009) J. Biol. Chem , vol.284 , pp. 14189-14202
    • Wang, Z.1    Treder, K.2    Miller, W.A.3
  • 17
    • 79958100720 scopus 로고    scopus 로고
    • The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element
    • Wang, Z., Parisien, M., Scheets, K. &Miller, W. A. The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element. Structure 19, 868-880 (2011).
    • (2011) Structure , vol.19 , pp. 868-880
    • Wang, Z.1    Parisien, M.2    Scheets, K.3    Miller, W.A.4
  • 18
    • 50149094450 scopus 로고    scopus 로고
    • Structural domains within the 3′untranslated region of Turnip crinkle virus
    • McCormack, J. C. et al. Structural domains within the 3′untranslated region of Turnip crinkle virus. J. Virol. 82, 8706-8720 (2008).
    • (2008) J. Virol , vol.82 , pp. 8706-8720
    • McCormack, J.C.1
  • 19
    • 76549124254 scopus 로고    scopus 로고
    • Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3′UTR of turnip crinkle virus
    • Zuo, X. et al. Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3′UTR of turnip crinkle virus. Proc. Natl Acad. Sci. USA 107, 1385-1390 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 1385-1390
    • Zuo, X.1
  • 20
    • 1842741210 scopus 로고    scopus 로고
    • A novel interaction of cap-binding protein complexes eukaryotic initiation factor (eIF) 4F and eIF(iso)4F with a region in the 3′-untranslated region of satellite tobacco necrosis virus
    • Gazo, B. M., Murphy, P., Gatchel, J. R. &Browning, K. S. A novel interaction of cap-binding protein complexes eukaryotic initiation factor (eIF) 4F and eIF(iso)4F with a region in the 3′-untranslated region of satellite tobacco necrosis virus. J. Biol. Chem. 279, 13584-13592 (2004).
    • (2004) J. Biol. Chem , vol.279 , pp. 13584-13592
    • Gazo, B.M.1    Murphy, P.2    Gatchel, J.R.3    Browning, K.S.4
  • 21
    • 38049016441 scopus 로고    scopus 로고
    • The 3′cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation
    • Treder, K. et al. The 3′cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation. RNA 14, 134-147 (2008).
    • (2008) RNA , vol.14 , pp. 134-147
    • Treder, K.1
  • 22
    • 84873028638 scopus 로고    scopus 로고
    • Tombusvirus Y-shaped translational enhancer forms a complex with eIF4F and can be functionally replaced by heterologous translational enhancers
    • Nicholson, B. L., Zaslaver, O., Mayberry, L. K., Browning, K. S. &White, K. A. Tombusvirus Y-shaped translational enhancer forms a complex with eIF4F and can be functionally replaced by heterologous translational enhancers. J. Virol. 87, 1872-1883 (2013).
    • (2013) J. Virol , vol.87 , pp. 1872-1883
    • Nicholson, B.L.1    Zaslaver, O.2    Mayberry, L.K.3    Browning, K.S.4    White, K.A.5
  • 23
    • 55549137084 scopus 로고    scopus 로고
    • The 3′proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits
    • Stupina, V. A. et al. The 3′proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. RNA 14, 2379-2393 (2008).
    • (2008) RNA , vol.14 , pp. 2379-2393
    • Stupina, V.A.1
  • 24
    • 84866153393 scopus 로고    scopus 로고
    • A ribosome-binding, 3′translational enhancer has a T-shaped structure and engages in a long-distance RNA-RNA interaction
    • Gao, F., Kasprzak, W., Stupina, V. A., Shapiro, B. A. &Simon, A. E. A ribosome-binding, 3′translational enhancer has a T-shaped structure and engages in a long-distance RNA-RNA interaction. J. Virol. 86, 9828-9842 (2012).
    • (2012) J. Virol , vol.86 , pp. 9828-9842
    • Gao, F.1    Kasprzak, W.2    Stupina, V.A.3    Shapiro, B.A.4    Simon, A.E.5
  • 25
    • 0035947236 scopus 로고    scopus 로고
    • Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA
    • Guo, L., Allen, E. M. &Miller, W. A. Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA. Mol. Cell 7, 1103-1109 (2001).
    • (2001) Mol. Cell , vol.7 , pp. 1103-1109
    • Guo, L.1    Allen, E.M.2    Miller, W.A.3
  • 26
    • 3142660625 scopus 로고    scopus 로고
    • 5′-3′RNA-RNA interaction facilitates cap-and poly(A) tail-independent translation of tomato bushy stunt virus mRNA: A potential common mechanism for Tombusviridae
    • Fabian, M. R. &White, K. A. 5′-3′RNA-RNA interaction facilitates cap-and poly(A) tail-independent translation of tomato bushy stunt virus mRNA: a potential common mechanism for Tombusviridae. J. Biol. Chem. 279, 28862-28872 (2004).
    • (2004) J. Biol. Chem , vol.279 , pp. 28862-28872
    • Fabian, M.R.1    White, K.A.2
  • 27
    • 33745599882 scopus 로고    scopus 로고
    • Analysis of a 3′-translation enhancer in a tombusvirus: A dynamic model for RNA-RNA interactions of mRNA termini
    • Fabian, M. R. &White, K. A. Analysis of a 3′-translation enhancer in a tombusvirus: a dynamic model for RNA-RNA interactions of mRNA termini. RNA 12, 1304-1314 (2006).
    • (2006) RNA , vol.12 , pp. 1304-1314
    • Fabian, M.R.1    White, K.A.2
  • 28
    • 53249143968 scopus 로고    scopus 로고
    • Context-influenced cap-independent translation of Tombusvirus mRNAs in vitro
    • Nicholson, B. L. &White, K. A. Context-influenced cap-independent translation of Tombusvirus mRNAs in vitro. Virology 380, 203-212 (2008).
    • (2008) Virology , vol.380 , pp. 203-212
    • Nicholson, B.L.1    White, K.A.2
  • 29
    • 79960954238 scopus 로고    scopus 로고
    • Long-distance kissing loop interactions between a 3′proximal Y-shaped structure and apical loops of 5′hairpins enhance translation of Saguaro cactus virus
    • Chattopadhyay, M., Shi, K., Yuan, X. &Simon, A. E. Long-distance kissing loop interactions between a 3′proximal Y-shaped structure and apical loops of 5′hairpins enhance translation of Saguaro cactus virus. Virology 417, 113-125 (2011).
    • (2011) Virology , vol.417 , pp. 113-125
    • Chattopadhyay, M.1    Shi, K.2    Yuan, X.3    Simon, A.E.4
  • 30
    • 33749237734 scopus 로고    scopus 로고
    • Oscillating kissing stem-loop interactions mediate 5′scanning- dependent translation by a viral 3′-cap-independent translation element
    • Rakotondrafara, A. M., Polacek, C., Harris, E. &Miller, W. A. Oscillating kissing stem-loop interactions mediate 5′scanning-dependent translation by a viral 3′-cap-independent translation element. RNA 12, 1893-1906 (2006).
    • (2006) RNA , vol.12 , pp. 1893-1906
    • Rakotondrafara, A.M.1    Polacek, C.2    Harris, E.3    Miller, W.A.4
  • 31
    • 84886255546 scopus 로고    scopus 로고
    • The kl-TSS translational enhancer of PEMV can bind simultaneously to ribosomes and a 5′proximal hairpin
    • Gao, F. et al. The kl-TSS translational enhancer of PEMV can bind simultaneously to ribosomes and a 5′proximal hairpin. J. Virol. 87, 11987-12002 (2013).
    • (2013) J. Virol , vol.87 , pp. 11987-12002
    • Gao, F.1
  • 32
    • 0037109209 scopus 로고    scopus 로고
    • IRES-driven translation is stimulated separately by the FMDV 3′-NCR and poly(A) sequences
    • López de Quinto, S., Sáiz, M., de la Morena, D., Sobrino, F. &Martínez-Salas, E. IRES-driven translation is stimulated separately by the FMDV 3′-NCR and poly(A) sequences. Nucleic Acids Res. 30, 4398-4405 (2002).
    • (2002) Nucleic Acids Res , vol.30 , pp. 4398-4405
    • De López, Q.S.1    Sáiz, M.2    De La Morena, D.3    Sobrino, F.4    Martínez-Salas, E.5
  • 33
    • 33749069918 scopus 로고    scopus 로고
    • The 3′end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5′end region
    • Serrano, P., Pulido, M. R., Sáiz, M. &Martínez-Salas, E. The 3′end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5′end region. J. Gen. Virol. 87, 3013-3022 (2006).
    • (2006) J. Gen. Virol , vol.87 , pp. 3013-3022
    • Serrano, P.1    Pulido, M.R.2    Sáiz, M.3    Martínez-Salas, E.4
  • 34
    • 84863240725 scopus 로고    scopus 로고
    • The 3′-terminal hexamer sequence of classical swine fever virus RNA plays a role in negatively regulating the IRES-mediated translation
    • Huang, S. W., Chan, M. Y., Hsu, W. L., Huang, C. C. &Tsai, C. H. The 3′-terminal hexamer sequence of classical swine fever virus RNA plays a role in negatively regulating the IRES-mediated translation. PLoS ONE 7, e33764 (2012).
    • (2012) PLoS ONE , vol.7
    • Huang, S.W.1    Chan, M.Y.2    Hsu, W.L.3    Huang, C.C.4    Tsai, C.H.5
  • 35
    • 69049116216 scopus 로고    scopus 로고
    • A long-range RNA-RNA interaction between the 5′and 3′ends of the HCV genome
    • Romero-López, C. &Berzal-Herranz, A. A long-range RNA-RNA interaction between the 5′and 3′ends of the HCV genome. RNA 15, 1740-1752 (2009).
    • (2009) RNA , vol.15 , pp. 1740-1752
    • Romero-López, C.1    Berzal-Herranz, A.2
  • 36
    • 84856235423 scopus 로고    scopus 로고
    • The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation
    • Romero-López, C. &Berzal-Herranz, A. The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation. Cell. Mol. Life Sci. 69, 103-113 (2012).
    • (2012) Cell. Mol. Life Sci , vol.69 , pp. 103-113
    • Romero-López, C.1    Berzal-Herranz, A.2
  • 38
    • 50949115626 scopus 로고    scopus 로고
    • A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B
    • Diviney, S. et al. A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. J. Virol. 82, 9008-9022 (2008).
    • (2008) J. Virol , vol.82 , pp. 9008-9022
    • Diviney, S.1
  • 39
    • 84864951957 scopus 로고    scopus 로고
    • A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication
    • Tuplin, A., Struthers, M., Simmonds, P. &Evans, D. J. A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication. Nucleic Acids Res. 40, 6908-6921 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 6908-6921
    • Tuplin, A.1    Struthers, M.2    Simmonds, P.3    Evans, D.J.4
  • 40
    • 84879298640 scopus 로고    scopus 로고
    • Direct evidence for RNA-RNA interactions at the 3′end of the hepatitis C virus genome using surface plasmon resonance
    • Palau, W., Masante, C., Ventura, M. &Di Primo, C. Direct evidence for RNA-RNA interactions at the 3′end of the hepatitis C virus genome using surface plasmon resonance. RNA 19, 982-991 (2013).
    • (2013) RNA , vol.19 , pp. 982-991
    • Palau, W.1    Masante, C.2    Ventura, M.3    Di Primo, C.4
  • 41
    • 84876387453 scopus 로고    scopus 로고
    • Hepatitis C virus RNA: Molecular switches mediated by long-range RNA-RNA interactions?
    • Shetty, S., Stefanovic, S. &Mihailescu, M. R. Hepatitis C virus RNA: molecular switches mediated by long-range RNA-RNA interactions? Nucleic Acids Res. 41, 2526-2540 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 2526-2540
    • Shetty, S.1    Stefanovic, S.2    Mihailescu, M.R.3
  • 42
  • 43
    • 10644226734 scopus 로고    scopus 로고
    • Kissing-loop interaction in the 3′end of the hepatitis C virus genome essential for RNA replication
    • Friebe, P., Boudet, J., Simorre, J. P. &Bartenschlager, R. Kissing-loop interaction in the 3′end of the hepatitis C virus genome essential for RNA replication. J. Virol. 79, 380-392 (2005).
    • (2005) J. Virol , vol.79 , pp. 380-392
    • Friebe, P.1    Boudet, J.2    Simorre, J.P.3    Bartenschlager, R.4
  • 44
    • 33748967949 scopus 로고    scopus 로고
    • Role of the RNA2 3′non-translated region of Blackcurrant reversion nepovirus in translational regulation
    • Karetnikov, A., Keränen, M. &Lehto, K. Role of the RNA2 3′non-translated region of Blackcurrant reversion nepovirus in translational regulation. Virology 354, 178-191 (2006).
    • (2006) Virology , vol.354 , pp. 178-191
    • Karetnikov, A.1    Keränen, M.2    Lehto, K.3
  • 45
    • 33846142850 scopus 로고    scopus 로고
    • The RNA2 5′leader of Blackcurrant reversion virus mediates efficient in vivo translation through an internal ribosomal entry site mechanism
    • Karetnikov, A. &Lehto, K. J. The RNA2 5′leader of Blackcurrant reversion virus mediates efficient in vivo translation through an internal ribosomal entry site mechanism. J. Gen. Virol. 88, 286-297 (2007).
    • (2007) J. Gen. Virol , vol.88 , pp. 286-297
    • Karetnikov, A.1    Lehto, K.J.2
  • 46
    • 38649130986 scopus 로고    scopus 로고
    • Translation mechanisms involving long-distance base pairing interactions between the 5′and 3′non-translated regions and internal ribosomal entry are conserved for both genomic RNAs of Blackcurrant reversion nepovirus
    • Karetnikov, A. &Lehto, K. Translation mechanisms involving long-distance base pairing interactions between the 5′and 3′non-translated regions and internal ribosomal entry are conserved for both genomic RNAs of Blackcurrant reversion nepovirus. Virology 371, 292-308 (2008).
    • (2008) Virology , vol.371 , pp. 292-308
    • Karetnikov, A.1    Lehto, K.2
  • 47
    • 0037143642 scopus 로고    scopus 로고
    • A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA
    • Barry, J. K. &Miller, W. A. A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA. Proc. Natl Acad. Sci. USA 99, 11133-11138 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11133-11138
    • Barry, J.K.1    Miller, W.A.2
  • 48
    • 79960940357 scopus 로고    scopus 로고
    • A long-distance RNA-RNA interaction plays an important role in programmed -1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus
    • Tajima, Y., Iwakawa, H. O., Kaido, M., Mise, K. &Okuno, T. A long-distance RNA-RNA interaction plays an important role in programmed -1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus. Virology 417, 169-178 (2011).
    • (2011) Virology , vol.417 , pp. 169-178
    • Tajima, Y.1    Iwakawa, H.O.2    Kaido, M.3    Mise, K.4    Okuno, T.5
  • 49
    • 84876059462 scopus 로고    scopus 로고
    • RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus
    • Ishimaru, D. et al. RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus. Nucleic Acids Res. 41, 2594-2608 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 2594-2608
    • Ishimaru, D.1
  • 50
    • 84855273851 scopus 로고    scopus 로고
    • Multifaceted regulation of translational readthrough by RNA replication elements in a tombusvirus
    • Cimino, P. A., Nicholson, B. L., Wu, B., Xu, W. &White, K. A. Multifaceted regulation of translational readthrough by RNA replication elements in a tombusvirus. PLoS Pathog. 7, e1002423 (2011).
    • (2011) PLoS Pathog , vol.7
    • Cimino, P.A.1    Nicholson, B.L.2    Wu, B.3    Xu, W.4    White, K.A.5
  • 51
    • 59749084360 scopus 로고    scopus 로고
    • Genome cyclization as strategy for flavivirus RNA replication
    • Villordo, S. M. &Gamarnik, A. V. Genome cyclization as strategy for flavivirus RNA replication. Virus Res. 139, 230-239 (2009).
    • (2009) Virus Res , vol.139 , pp. 230-239
    • Villordo, S.M.1    Gamarnik, A.V.2
  • 52
    • 63449108614 scopus 로고    scopus 로고
    • A discontinuous RNA platform mediates RNA virus replication: Building an integrated model for RNA-based regulation of viral processes
    • Wu, B. et al. A discontinuous RNA platform mediates RNA virus replication: building an integrated model for RNA-based regulation of viral processes. PLoS Pathog. 5, e1000323 (2009).
    • (2009) PLoS Pathog , vol.5
    • Wu, B.1
  • 53
    • 0035844132 scopus 로고    scopus 로고
    • In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′-and 3′-terminal regions that influence RNA structure
    • You, S., Falgout, B., Markoff, L. &Padmanabhan, R. In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′-and 3′-terminal regions that influence RNA structure. J. Biol. Chem. 276, 15581-15591 (2001).
    • (2001) J. Biol. Chem , vol.276 , pp. 15581-15591
    • You, S.1    Falgout, B.2    Markoff, L.3    Padmanabhan, R.4
  • 54
    • 0034984219 scopus 로고    scopus 로고
    • Essential role of cyclization sequences in flavivirus RNA replication
    • Khromykh, A. A., Meka, H., Guyatt, K. J. &Westaway, E. G. Essential role of cyclization sequences in flavivirus RNA replication. J. Virol. 75, 6719-6728 (2001).
    • (2001) J. Virol , vol.75 , pp. 6719-6728
    • Khromykh, A.A.1    Meka, H.2    Guyatt, K.J.3    Westaway, E.G.4
  • 55
    • 0037303672 scopus 로고    scopus 로고
    • Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization
    • Corver, J. et al. Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization. J. Virol. 77, 2265-2270 (2003).
    • (2003) J. Virol , vol.77 , pp. 2265-2270
    • Corver, J.1
  • 57
    • 42749084987 scopus 로고    scopus 로고
    • Functional analysis of dengue virus cyclization sequences located at the 5′and 3′-UTRs
    • Alvarez, D. E., Filomatori, C. V. &Gamarnik, A. V. Functional analysis of dengue virus cyclization sequences located at the 5′and 3′-UTRs. Virology 375, 223-235 (2008).
    • (2008) Virology , vol.375 , pp. 223-235
    • Alvarez, D.E.1    Filomatori, C.V.2    Gamarnik, A.V.3
  • 58
    • 40649100035 scopus 로고    scopus 로고
    • West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions
    • Zhang, B., Dong, H., Stein, D. A., Iversen, P. L. &Shi, P. Y. West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions. Virology 373, 1-13 (2008).
    • (2008) Virology , vol.373 , pp. 1-13
    • Zhang, B.1    Dong, H.2    Stein, D.A.3    Iversen, P.L.4    Shi, P.Y.5
  • 59
    • 78149409349 scopus 로고    scopus 로고
    • Genetic analysis of West Nile virus containing a complete 3′-CSI RNA deletion
    • Zhang, B., Dong, H., Ye, H., Tilgner, M. &Shi, P. Y. Genetic analysis of West Nile virus containing a complete 3′-CSI RNA deletion. Virology 408, 138-145 (2010).
    • (2010) Virology , vol.408 , pp. 138-145
    • Zhang, B.1    Dong, H.2    Ye, H.3    Tilgner, M.4    Shi, P.Y.5
  • 60
    • 77952736780 scopus 로고    scopus 로고
    • Interplay of RNA elements in the dengue virus 5′and 3′ends required for viral RNA replication
    • Friebe, P. &Harris, E. Interplay of RNA elements in the dengue virus 5′and 3′ends required for viral RNA replication. J. Virol. 84, 6103-6118 (2010).
    • (2010) J. Virol , vol.84 , pp. 6103-6118
    • Friebe, P.1    Harris, E.2
  • 61
    • 78951475155 scopus 로고    scopus 로고
    • The 5′and 3′downstream AUG region elements are required for mosquito-borne flavivirus RNA replication
    • Friebe, P., Shi, P. Y. &Harris, E. The 5′and 3′downstream AUG region elements are required for mosquito-borne flavivirus RNA replication. J. Virol. 85, 1900-1905 (2011).
    • (2011) J. Virol , vol.85 , pp. 1900-1905
    • Friebe, P.1    Shi, P.Y.2    Harris, E.3
  • 62
    • 84877267759 scopus 로고    scopus 로고
    • Structural complexity of Dengue virus untranslated regions: Cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome
    • Sztuba-Solinska, J. et al. Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome. Nucleic Acids Res. 41, 5075-5089 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 5075-5089
    • Sztuba-Solinska, J.1
  • 63
    • 84863877179 scopus 로고    scopus 로고
    • Core protein-mediated 5′-3′annealing of the West Nile virus genomic RNA in vitro
    • Ivanyi-Nagy, R. &Darlix, J. L. Core protein-mediated 5′-3′annealing of the West Nile virus genomic RNA in vitro. Virus Res. 167, 226-235 (2012).
    • (2012) Virus Res , vol.167 , pp. 226-235
    • Ivanyi-Nagy, R.1    Darlix, J.L.2
  • 64
    • 84860491231 scopus 로고    scopus 로고
    • Novel ATP-independent RNA annealing activity of the dengue virus NS3 helicase
    • Gebhard, L. G., Kaufman, S. B. &Gamarnik, A. V. Novel ATP-independent RNA annealing activity of the dengue virus NS3 helicase. PLoS ONE 7, e36244 (2012).
    • (2012) PLoS ONE , vol.7
    • Gebhard, L.G.1    Kaufman, S.B.2    Gamarnik, A.V.3
  • 65
    • 33747344212 scopus 로고    scopus 로고
    • A 5′RNA element promotes dengue virus RNA synthesis on a circular genome
    • Filomatori, C. V. et al. A 5′RNA element promotes dengue virus RNA synthesis on a circular genome. Genes Dev. 20, 2238-2249 (2006).
    • (2006) Genes Dev , vol.20 , pp. 2238-2249
    • Filomatori, C.V.1
  • 66
    • 54049142396 scopus 로고    scopus 로고
    • Terminal structures of West Nile virus genomic RNA and their interactions with viral NS5 protein
    • Dong, H., Zhang, B. &Shi, P. Y. Terminal structures of West Nile virus genomic RNA and their interactions with viral NS5 protein. Virology 381, 123-135 (2008).
    • (2008) Virology , vol.381 , pp. 123-135
    • Dong, H.1    Zhang, B.2    Shi, P.Y.3
  • 67
    • 84878526763 scopus 로고    scopus 로고
    • Novel cis-acting element within the capsid-coding region enhances flavivirus viral-RNA replication by regulating genome cyclization
    • Liu, Z. Y. et al. Novel cis-acting element within the capsid-coding region enhances flavivirus viral-RNA replication by regulating genome cyclization. J. Virol. 87, 6804-6818 (2013).
    • (2013) J. Virol , vol.87 , pp. 6804-6818
    • Liu, Z.Y.1
  • 68
    • 78649681550 scopus 로고    scopus 로고
    • A balance between circular and linear forms of the dengue virus genome is crucial for viral replication
    • Villordo, S. M., Alvarez, D. E. &Gamarnik, A. V. A balance between circular and linear forms of the dengue virus genome is crucial for viral replication. RNA 16, 2325-2335 (2010).
    • (2010) RNA , vol.16 , pp. 2325-2335
    • Villordo, S.M.1    Alvarez, D.E.2    Gamarnik, A.V.3
  • 69
    • 84881225571 scopus 로고    scopus 로고
    • Differential RNA sequence requirement for dengue virus replication in mosquito and mammalian cells
    • Villordo, S. M. &Gamarnik, A. V. Differential RNA sequence requirement for dengue virus replication in mosquito and mammalian cells. J. Virol. 87, 9365-9372 (2013).
    • (2013) J. Virol , vol.87 , pp. 9365-9372
    • Villordo, S.M.1    Gamarnik, A.V.2
  • 70
    • 84879462314 scopus 로고    scopus 로고
    • Do RNA viruses require genome cyclisation for replication?
    • Lott, W. B. &Doran, M. R. Do RNA viruses require genome cyclisation for replication? Trends Biochem. Sci. 38, 350-355 (2013).
    • (2013) Trends Biochem. Sci , vol.38 , pp. 350-355
    • Lott, W.B.1    Doran, M.R.2
  • 71
    • 30844436615 scopus 로고    scopus 로고
    • Kinetics and functional studies on interaction between the replicase proteins of Tomato bushy stunt virus: Requirement of p33:p92 interaction for replicase assembly
    • Rajendran, K. S. &Nagy, P. D. Kinetics and functional studies on interaction between the replicase proteins of Tomato bushy stunt virus: requirement of p33:p92 interaction for replicase assembly. Virology 345, 270-279 (2006).
    • (2006) Virology , vol.345 , pp. 270-279
    • Rajendran, K.S.1    Nagy, P.D.2
  • 72
    • 16244383861 scopus 로고    scopus 로고
    • Specific binding of tombusvirus replication protein p33 to an internal replication element in the viral RNA is essential for replication
    • Pogany, J., White, K. A. &Nagy, P. D. Specific binding of tombusvirus replication protein p33 to an internal replication element in the viral RNA is essential for replication. J. Virol. 79, 4859-4869 (2005).
    • (2005) J. Virol , vol.79 , pp. 4859-4869
    • Pogany, J.1    White, K.A.2    Nagy, P.D.3
  • 73
    • 84855971702 scopus 로고    scopus 로고
    • Defining the roles of cis-acting RNA elements in tombusvirus replicase assembly in vitro
    • Pathak, K. B., Pogany, J., Xu, K., White, K. A. &Nagy, P. D. Defining the roles of cis-acting RNA elements in tombusvirus replicase assembly in vitro. J. Virol. 86, 156-171 (2012).
    • (2012) J. Virol , vol.86 , pp. 156-171
    • Pathak, K.B.1    Pogany, J.2    Xu, K.3    White, K.A.4    Nagy, P.D.5
  • 74
    • 84872867680 scopus 로고    scopus 로고
    • Internal RNA replication elements are prevalent in Tombusviridae
    • Nicholson, B. L., Lee, P. K. &White, K. A. Internal RNA replication elements are prevalent in Tombusviridae. Front. Microbiol. 3, 279 (2012).
    • (2012) Front. Microbiol , vol.3 , pp. 279
    • Nicholson, B.L.1    Lee, P.K.2    White, K.A.3
  • 76
    • 33845750075 scopus 로고    scopus 로고
    • A contemporary view of coronavirus transcription
    • Sawicki, S. G., Sawicki, D. L. &Siddell, S. G. A contemporary view of coronavirus transcription. J. Virol. 81, 20-29 (2007).
    • (2007) J. Virol , vol.81 , pp. 20-29
    • Sawicki, S.G.1    Sawicki, D.L.2    Siddell, S.G.3
  • 77
    • 41949095806 scopus 로고    scopus 로고
    • Identification of a coronavirus transcription enhancer
    • Moreno, J. L., Zúñiga, S., Enjuanes, L. &Sola, I. Identification of a coronavirus transcription enhancer. J. Virol. 82, 3882-3893 (2008).
    • (2008) J. Virol , vol.82 , pp. 3882-3893
    • Moreno, J.L.1    Zúñiga, S.2    Enjuanes, L.3    Sola, I.4
  • 78
    • 80052286760 scopus 로고    scopus 로고
    • Gene N proximal and distal RNA motifs regulate coronavirus nucleocapsid mRNA transcription
    • Mateos-Gómez, P. A., Zuñiga, S., Palacio, L., Enjuanes, L. &Sola, I. Gene N proximal and distal RNA motifs regulate coronavirus nucleocapsid mRNA transcription. J. Virol. 85, 8968-8980 (2011).
    • (2011) J. Virol , vol.85 , pp. 8968-8980
    • Mateos-Gómez, P.A.1    Zuñiga, S.2    Palacio, L.3    Enjuanes, L.4    Sola, I.5
  • 79
    • 84871951381 scopus 로고    scopus 로고
    • Long distance RNA-RNA interactions in the coronavirus genome form high-order structures promoting discontinuous RNA synthesis during transcription
    • Mateos-Gomez, P. A., Morales, L., Zuñiga, S., Enjuanes, L. &Sola, I. Long distance RNA-RNA interactions in the coronavirus genome form high-order structures promoting discontinuous RNA synthesis during transcription. J. Virol. 87, 177-186 (2013).
    • (2013) J. Virol , vol.87 , pp. 177-186
    • Mateos-Gomez, P.A.1    Morales, L.2    Zuñiga, S.3    Enjuanes, L.4    Sola, I.5
  • 80
    • 79954549751 scopus 로고    scopus 로고
    • Subgenomic mRNA transcription in Tombusviridae
    • Jiwan, S. D. &White, K. A. Subgenomic mRNA transcription in Tombusviridae. RNA Biol. 8, 287-294 (2011).
    • (2011) RNA Biol , vol.8 , pp. 287-294
    • Jiwan, S.D.1    White, K.A.2
  • 81
    • 0036479122 scopus 로고    scopus 로고
    • An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus
    • Choi, I. R. &White, K. A. An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus. J. Biol. Chem. 277, 3760-3766 (2002).
    • (2002) J. Biol. Chem , vol.277 , pp. 3760-3766
    • Choi, I.R.1    White, K.A.2
  • 82
    • 0035834784 scopus 로고    scopus 로고
    • Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription
    • Choi, I. R., Ostrovsky, M., Zhang, G. &White, K. A. Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription. J. Biol. Chem. 276, 41761-41768 (2001).
    • (2001) J. Biol. Chem , vol.276 , pp. 41761-41768
    • Choi, I.R.1    Ostrovsky, M.2    Zhang, G.3    White, K.A.4
  • 83
    • 4444303052 scopus 로고    scopus 로고
    • A complex network of RNA-RNA interactions controls subgenomic mRNA transcription in a tombusvirus
    • Lin, H. &White, K. A. A complex network of RNA-RNA interactions controls subgenomic mRNA transcription in a tombusvirus. EMBO J. 23, 3365-3374 (2004).
    • (2004) EMBO J , vol.23 , pp. 3365-3374
    • Lin, H.1    White, K.A.2
  • 84
    • 41949136964 scopus 로고    scopus 로고
    • Higher-order RNA structural requirements and small-molecule induction of tombusvirus subgenomic mRNA transcription
    • Wang, S., Mortazavi, L. &White, K. A. Higher-order RNA structural requirements and small-molecule induction of tombusvirus subgenomic mRNA transcription. J. Virol. 82, 3864-3871 (2008).
    • (2008) J. Virol , vol.82 , pp. 3864-3871
    • Wang, S.1    Mortazavi, L.2    White, K.A.3
  • 85
    • 0036200419 scopus 로고    scopus 로고
    • Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication
    • Lindenbach, B. D., Sgro, J. Y. &Ahlquist, P. Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication. J. Virol. 76, 3905-3919 (2002).
    • (2002) J. Virol , vol.76 , pp. 3905-3919
    • Lindenbach, B.D.1    Sgro, J.Y.2    Ahlquist, P.3
  • 86
    • 0032493916 scopus 로고    scopus 로고
    • RNA-mediated trans-activation of transcription from a viral RNA
    • Sit, T. L., Vaewhongs, A. A. &Lommel, S. A. RNA-mediated trans-activation of transcription from a viral RNA. Science 281, 829-832 (1998).
    • (1998) Science , vol.281 , pp. 829-832
    • Sit, T.L.1    Vaewhongs, A.A.2    Lommel, S.A.3
  • 87
    • 70349279947 scopus 로고    scopus 로고
    • RNA-based regulation of transcription and translation of aureusvirus subgenomic mRNA1
    • Xu, W. &White, K. A. RNA-based regulation of transcription and translation of aureusvirus subgenomic mRNA1. J. Virol. 83, 10096-10105 (2009).
    • (2009) J. Virol , vol.83 , pp. 10096-10105
    • Xu, W.1    White, K.A.2
  • 88
    • 80052026832 scopus 로고    scopus 로고
    • Subgenomic mRNA transcription in tobacco necrosis virus
    • Jiwan, S. D., Wu, B. &White, K. A. Subgenomic mRNA transcription in tobacco necrosis virus. Virology 418, 1-11 (2011).
    • (2011) Virology , vol.418 , pp. 1-11
    • Jiwan, S.D.1    Wu, B.2    White, K.A.3
  • 89
    • 77954532016 scopus 로고    scopus 로고
    • Evidence for a premature termination mechanism of subgenomic mRNA transcription in a carmovirus
    • Wu, B., Oliveri, S., Mandic, J. &White, K. A. Evidence for a premature termination mechanism of subgenomic mRNA transcription in a carmovirus. J. Virol. 84, 7904-7907 (2010).
    • (2010) J. Virol , vol.84 , pp. 7904-7907
    • Wu, B.1    Oliveri, S.2    Mandic, J.3    White, K.A.4
  • 90
    • 84894281794 scopus 로고    scopus 로고
    • Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions
    • Strulson, C. A., Boyer, J. A., Whitman, E. E. &Bevilacqua, P. C. Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions. RNA 20, 331-347 (2014).
    • (2014) RNA , vol.20 , pp. 331-347
    • Strulson, C.A.1    Boyer, J.A.2    Whitman, E.E.3    Bevilacqua, P.C.4
  • 91
    • 16244412610 scopus 로고    scopus 로고
    • RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
    • Merino, E. J., Wilkinson, K. A., Coughlan, J. L. &Weeks, K. M. RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc. 127, 4223-4231 (2005).
    • (2005) J. Am. Chem. Soc , vol.127 , pp. 4223-4231
    • Merino, E.J.1    Wilkinson, K.A.2    Coughlan, J.L.3    Weeks, K.M.4
  • 92
    • 77957139491 scopus 로고    scopus 로고
    • SHAPE-directed RNA secondary structure prediction
    • Low, J. T. &Weeks, K. M. SHAPE-directed RNA secondary structure prediction. Methods 52, 150-158 (2010).
    • (2010) Methods , vol.52 , pp. 150-158
    • Low, J.T.1    Weeks, K.M.2
  • 93
    • 84877357906 scopus 로고    scopus 로고
    • Long-range architecture in a viral RNA genome
    • Archer, E. J. et al. Long-range architecture in a viral RNA genome. Biochemistry 52, 3182-3190 (2013).
    • (2013) Biochemistry , vol.52 , pp. 3182-3190
    • Archer, E.J.1
  • 94
    • 84872803421 scopus 로고    scopus 로고
    • In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus
    • Athavale, S. S. et al. In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus. PLoS ONE 8, e54384 (2013).
    • (2013) PLoS ONE , vol.8
    • Athavale, S.S.1
  • 95
    • 84878522227 scopus 로고    scopus 로고
    • Global organization of a positive-strand RNA virus genome
    • Wu, B., Grigull, J., Ore, M. O., Morin, S. &White, K. A. Global organization of a positive-strand RNA virus genome. PLoS Pathog. 9, e1003363 (2013).
    • (2013) PLoS Pathog , vol.9
    • Wu, B.1    Grigull, J.2    Ore, M.O.3    Morin, S.4    White, K.A.5
  • 96
    • 84890132388 scopus 로고    scopus 로고
    • Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
    • Lovci, M. T. et al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nature Struct. Mol. Biol. 20, 1434-1442 (2013).
    • (2013) Nature Struct. Mol. Biol , vol.20 , pp. 1434-1442
    • Lovci, M.T.1
  • 97
    • 77957679426 scopus 로고    scopus 로고
    • 5′-3′-UTR interactions regulate p53 mRNA translation and provide a target for modulating p53 induction after DNA damage
    • Chen, J. &Kastan, M. B. 5′-3′-UTR interactions regulate p53 mRNA translation and provide a target for modulating p53 induction after DNA damage. Genes Dev. 24, 2146-2156 (2010).
    • (2010) Genes Dev , vol.24 , pp. 2146-2156
    • Chen, J.1    Kastan, M.B.2
  • 98
    • 84892712664 scopus 로고    scopus 로고
    • Base pairing interaction between 5′-and 3′-UTRs controls icaR mRNA translation in Staphylococcus aureus
    • Ruiz de Los Mozos, I. et al. Base pairing interaction between 5′-and 3′-UTRs controls icaR mRNA translation in Staphylococcus aureus. PLoS Genet. 9, e1004001 (2013).
    • (2013) PLoS Genet , vol.9
    • De Los Ruiz, M.I.1


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