-
1
-
-
0024995737
-
Secondary structure at the 3' terminal region of RNA coliphages: Comparison with tRNA
-
Adhin, M. R., Alblas, J. & van Duin, J. (1990a). Secondary structure at the 3' terminal region of RNA coliphages: comparison with tRNA. Biochim. Biophys. Acta, 1050, 110-118.
-
(1990)
Biochim. Biophys. Acta
, vol.1050
, pp. 110-118
-
-
Adhin, M.R.1
Alblas, J.2
Van Duin, J.3
-
2
-
-
0025125063
-
Complete nucleotide sequence of the group I RNA bacteriophage fr
-
Adhin, M. R., Avots, A., Berzin, V, Overbeek, G. P. & van Duin, J. (1990b). Complete nucleotide sequence of the group I RNA bacteriophage fr. Biochim. Biophys. Acta 1050, 104-109.
-
(1990)
Biochim. Biophys. Acta
, vol.1050
, pp. 104-109
-
-
Adhin, M.R.1
Avots, A.2
Berzin, V.3
Overbeek, G.P.4
Van Duin, J.5
-
3
-
-
0027282394
-
Different mechanisms of bacteriophage QP plus and minus strand RNAs by QP replicase
-
Barrera, I., Schuppli, D., Sogo, J. M. & Weber, H. (1993). Different mechanisms of bacteriophage QP plus and minus strand RNAs by QP replicase. J. Mol. Biol. 232, 512-521.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 512-521
-
-
Barrera, I.1
Schuppli, D.2
Sogo, J.M.3
Weber, H.4
-
4
-
-
0024261645
-
Roles of operator and non-operator RNA sequences in bacteriophage R17 capsid assembly
-
Beckett, D., Wu, H. N. & Uhlenbeck, O. C. (1988). Roles of operator and non-operator RNA sequences in bacteriophage R17 capsid assembly. J. Mol. Biol. 204, 939-947.
-
(1988)
J. Mol. Biol.
, vol.204
, pp. 939-947
-
-
Beckett, D.1
Wu, H.N.2
Uhlenbeck, O.C.3
-
5
-
-
0027319569
-
Sequence analysis of RNA species synthesized by QP replicase without template
-
Biebricher, C. K. & Luce, R. (1993). Sequence analysis of RNA species synthesized by QP replicase without template. Biochemistry, 32, 4848-4854.
-
(1993)
Biochemistry
, vol.32
, pp. 4848-4854
-
-
Biebricher, C.K.1
Luce, R.2
-
6
-
-
0026032684
-
A computer method for finding common base paired helices in aligned sequences: Application to the analysis of random sequences
-
Chan, L., Zuker, M. & Jacobson, A. B. (1991). A computer method for finding common base paired helices in aligned sequences: application to the analysis of random sequences. Nucl. Acids Res. 19, 353-358.
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 353-358
-
-
Chan, L.1
Zuker, M.2
Jacobson, A.B.3
-
8
-
-
0027212166
-
Replacement of RNA hairpins by in vitro selected tetranucleotides
-
Dichtl, B., Pan, T., DiRenzo, A. B. & Uhlenbeck, O. C. (1993. Replacement of RNA hairpins by in vitro selected tetranucleotides. Nucl. Acids Res. 21, 531-535.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 531-535
-
-
Dichtl, B.1
Pan, T.2
Direnzo, A.B.3
Uhlenbeck, O.C.4
-
9
-
-
0026684823
-
The structure of DNA junctions and their interaction with enzymes
-
Duckett, D. R., Murchie, A.l. H., Bhattacharyya, A., Clegg, R. M., Diekmann, S., von Kitzing, E. & Lilley D. M. J. (1992). The structure of DNA junctions and their interaction with enzymes. Eur. J. Biochem. 207, 285-295.
-
(1992)
Eur. J. Biochem.
, vol.207
, pp. 285-295
-
-
Duckett, D.R.1
Murchie, A.L.H.2
Bhattacharyya, A.3
Clegg, R.M.4
Diekmann, S.5
Von Kitzing, E.6
Lilley, D.M.J.7
-
10
-
-
0017235043
-
Complete nucleotide sequence of bacteriophage MS2 RNA: Primary and secondary structure of the replicase gene
-
Fiers, W., Contreras, R., Duerinck, F., Haegeman, C., Iserentant, D., Merregaert, J., Min Jou, W., Molemans, F., Raeymakers, A., Vandenberghe, A., Volckaert, C. & Isebaert, M. (1976). Complete nucleotide sequence of bacteriophage MS2 RNA: Primary and secondary structure of the replicase gene. Nature (London), 260, 500-507.
-
(1976)
Nature (London)
, vol.260
, pp. 500-507
-
-
Fiers, W.1
Contreras, R.2
Duerinck, F.3
Haegeman, C.4
Iserentant, D.5
Merregaert, J.6
Min Jou, W.7
Molemans, F.8
Raeymakers, A.9
Vandenberghe, A.10
Volckaert, C.11
Isebaert, M.12
-
11
-
-
0001939094
-
RACE: Rapid amplification of cDNA ends
-
Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J., Academic Press, New York
-
Frohman, M. A. (1990). RACE: rapid amplification of cDNA ends. In PCR Protocols: a Guide to Methods and Applications (Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J., eds), pp. 28-38, Academic Press, New York.
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 28-38
-
-
Frohman, M.A.1
-
12
-
-
0001856441
-
Distribution of coliphages in the environment: General considerations
-
Goyal, S. M., Gerba, C. P. & Bitton, G., eds), Wiley & Sons, New York
-
Furuse, K. (1987). Distribution of coliphages in the environment: general considerations. In Phage Ecology (Goyal, S. M., Gerba, C. P. & Bitton, G., eds), Wiley & Sons, New York.
-
(1987)
Phage Ecology
-
-
Furuse, K.1
-
13
-
-
0342754490
-
Isolation and grouping of RNA-phages. VII. A survey in Peru, Bolivia, Mexico, Kuwait, France, Australia and the United States of America
-
Furuse, K., Ando, A. & Watanabe, I. (1975). Isolation and grouping of RNA-phages. VII. A survey in Peru, Bolivia, Mexico, Kuwait, France, Australia and the United States of America. J. Keio Med. Soc. 52, 355-361.
-
(1975)
J. Keio Med. Soc.
, vol.52
, pp. 355-361
-
-
Furuse, K.1
O, A.2
Watanabe, I.3
-
14
-
-
0003648125
-
-
Version 7, Genetics Computer Group, Madison, Wisconsin
-
Genetics Computer Group (1991). Program Manual for the GCG Package, Version 7. Genetics Computer Group, Madison, Wisconsin.
-
(1991)
Program Manual for the GCG Package
-
-
-
15
-
-
0029258675
-
Translational control of maturation-protein, synthesis in phage MS2
-
Groeneveld, H., Thimon, K. & van Duin, J. (1995). Translational control of maturation-protein, synthesis in phage MS2. A role for the kinetics of RNA folding? RNA 1, in the press.
-
(1995)
A Role for the Kinetics of RNA Folding? RNA
, pp. 1
-
-
Groeneveld, H.1
Thimon, K.2
Van Duin, J.3
-
16
-
-
0022602470
-
Bacteriophages and indicator bacteria in human and animal faeces
-
Havelaar, A. H., Furuse, K. & Hogeboom, W. M. (1986). Bacteriophages and indicator bacteria in human and animal faeces. J. Appl. Bacteriol. 60, 255-262.
-
(1986)
J. Appl. Bacteriol.
, vol.60
, pp. 255-262
-
-
Havelaar, A.H.1
Furuse, K.2
Hogeboom, W.M.3
-
17
-
-
0026423027
-
Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops
-
Heus, H. A. & Pardi, A. (1991). Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. Science, 253, 191-194.
-
(1991)
Science
, vol.253
, pp. 191-194
-
-
Heus, H.A.1
Pardi, A.2
-
18
-
-
0020483623
-
Comparison of the nucleotide sequences at the 3'-terminal region of RNAs from RNA coliphages
-
Inokuchi, Y., Hirashima, A. & Watanabe, I. (1982). Comparison of the nucleotide sequences at the 3'-terminal region of RNAs from RNA coliphages. J. Mol. Biol. 158, 711-730.
-
(1982)
J. Mol. Biol.
, vol.158
, pp. 711-730
-
-
Inokuchi, Y.1
Hirashima, A.2
Watanabe, I.3
-
19
-
-
0022614986
-
The complete nucleotide sequence of group II RNA coliphage GA
-
Inokuchi, Y., Takahashi, R., Hirose, T., Inayama, S., Jacobson, A. B. & Hirashima A. (1986). The complete nucleotide sequence of group II RNA coliphage GA. J. Biochem. 99, 1169-1180.
-
(1986)
J. Biochem.
, vol.99
, pp. 1169-1180
-
-
Inokuchi, Y.1
Takahashi, R.2
Hirose, T.3
Inayama, S.4
Jacobson, A.B.5
Hirashima, A.6
-
20
-
-
0023897951
-
Analysis of the complete nucleotide sequence of the group IV coliphage SP
-
Inokuchi, Y., Jacobson, A. B., Hirose, T., Inayama, S. & Hirashima, A. (1988). Analysis of the complete nucleotide sequence of the group IV coliphage SP. Nucl. Acids Res. 16, 6205-6221.
-
(1988)
Nucl. Acids Res.
, vol.16
, pp. 6205-6221
-
-
Inokuchi, Y.1
Jacobson, A.B.2
Hirose, T.3
Inayama, S.4
Hirashima, A.5
-
21
-
-
0017055057
-
Crystallographic refinement of yeast phenylalanine transfer RNA at 2.5 JA resolution
-
Jack, A., Ladner, J. E. & Klug, A. (1976). Crystallographic refinement of yeast phenylalanine transfer RNA at 2.5 JA resolution. J. Mol. Biol. 108, 619-649.
-
(1976)
J. Mol. Biol.
, vol.108
, pp. 619-649
-
-
Jack, A.1
Ladner, J.E.2
Klug, A.3
-
22
-
-
0027375727
-
Structural analysis by energy dot plot of a large messenger RNA
-
Jacobson, A. B. & Zuker, M. (1993). Structural analysis by energy dot plot of a large messenger RNA. J. Mol. Biol. 233, 261-269.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 261-269
-
-
Jacobson, A.B.1
Zuker, M.2
-
23
-
-
0024827733
-
Phylogenetic comparative analysis of RNA secondary structure
-
James, B. D., Olsen, G. J. & Pace, N. R. (1989). Phylogenetic comparative analysis of RNA secondary structure. Methods Enzymol. 180, 227-239.
-
(1989)
Methods Enzymol
, vol.180
, pp. 227-239
-
-
James, B.D.1
Olsen, G.J.2
Pace, N.R.3
-
24
-
-
0025340544
-
Solution structure of human U1 snRNA. Derivation of a possible three-dimensional model
-
Krol, A., Westhof, E., Bach, M., Luehrmann, R., Ebel, J. P. & Carbon, P. (1990). Solution structure of human U1 snRNA. Derivation of a possible three-dimensional model. Nucl. Acids Res. 18, 3803-3811.
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 3803-3811
-
-
Krol, A.1
Westhof, E.2
Bach, M.3
Luehrmann, R.4
Ebel, J.P.5
Carbon, P.6
-
25
-
-
0026686191
-
Minimal sequence requirements for ribozyme activity
-
Mc Call, M. J., Hendry P. & Jennings, P. A. (1992). Minimal sequence requirements for ribozyme activity. Proc. Nat. Acad. Sci, U.S.A. 89, 5710-5714.
-
(1992)
Proc. Nat. Acad. Sci, U.S.A.
, vol.89
, pp. 5710-5714
-
-
McCall, M.J.1
Hendry, P.2
Jennings, P.A.3
-
27
-
-
0017579545
-
Genetic studies of the lac repressor. I. Correlation of mutational sites with specific amino acid residues; construction of a colinear gene-protein map
-
Miller, J. H., Ganem, D., Lu, P. & Schmitz, A. (1977). Genetic studies of the lac repressor. I. Correlation of mutational sites with specific amino acid residues; construction of a colinear gene-protein map. J. Mol. Biol. 109, 275-301.
-
(1977)
J. Mol. Biol.
, vol.109
, pp. 275-301
-
-
Miller, J.H.1
Ganem, D.2
Lu, P.3
Schmitz, A.4
-
28
-
-
0024590018
-
QP replicase: Mapping the functional domains of an RNA-dependent RNA polymerase
-
Mills, D. R., Priano, C., DiMauro, P. & Binderow, B. D. (1988). QP replicase: Mapping the functional domains of an RNA-dependent RNA polymerase. J. Mol. Biol. 205, 751-764.
-
(1988)
J. Mol. Biol.
, vol.205
, pp. 751-764
-
-
Mills, D.R.1
Priano, C.2
Dimauro, P.3
Binderow, B.D.4
-
29
-
-
0025339535
-
QP RNA bacteriophage: Mapping cis-acting elements within an RNA genome
-
Mills, D. R., Priano, C., Merz, P. & Binderow, B. R. (1990). QP RNA bacteriophage: Mapping cis-acting elements within an RNA genome. J. Virol. 64, 3872-3881.
-
(1990)
J. Virol.
, vol.64
, pp. 3872-3881
-
-
Mills, D.R.1
Priano, C.2
Merz, P.3
Binderow, B.R.4
-
30
-
-
0028201045
-
Leeway and constraints in the forced evolution of a regulatory RNA helix
-
Olsthoorn, R. C. L., Licis, N. & van DuinJ. (1994). Leeway and constraints in the forced evolution of a regulatory RNA helix. EMBO J. 13, 2660-2668.
-
(1994)
EMBO J
, vol.13
, pp. 2660-2668
-
-
Olsthoorn, R.C.L.1
Licis, N.2
Van, D.3
-
31
-
-
0027486046
-
Encapsidation of heterologous RNAs by bacteriophage MS2 coat protein
-
Pickett, G. G. & Peabody D. S. (1993). Encapsidation of heterologous RNAs by bacteriophage MS2 coat protein. Nucl. Acids Res. 21, 4621-4626.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 4621-4626
-
-
Pickett, G.G.1
Peabody, D.S.2
-
32
-
-
0023512932
-
Evolution of the RNA-coliphages; The role of secondary structures during RNA replication
-
Priano, C., Kramer, F. R. & Mills, D. R. (1987). Evolution of the RNA-coliphages; The role of secondary structures during RNA replication. Cold Spring Harbor Symp. Quant. Biol. 52, 321-339.
-
(1987)
Cold Spring Harbor Symp. Quant. Biol.
, vol.52
, pp. 321-339
-
-
Priano, C.1
Kramer, F.R.2
Mills, D.R.3
-
33
-
-
0025270143
-
The effect of replication errors in the mismatch analysis of PCR-amplified DNA
-
Reiss, J., Krawczak, M., Schloesser, M., Wagner, M. & Cooper, D. N. (1990). The effect of replication errors in the mismatch analysis of PCR-amplified DNA. Nucl. Acids Res. 18, 973-978.
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 973-978
-
-
Reiss, J.1
Krawczak, M.2
Schloesser, M.3
Wagner, M.4
Cooper, D.N.5
-
34
-
-
0027227406
-
Conformational differences between bulged pyrimidines (C-C) and purines (A-A, I-I) at the branch point of three-stranded DNA junctions
-
Rosen, M. A. & Patel, D. J. (1993). Conformational differences between bulged pyrimidines (C-C) and purines (A-A, I-I) at the branch point of three-stranded DNA junctions. Biochemistry, 32, 6563-6575.
-
(1993)
Biochemistry
, vol.32
, pp. 6563-6575
-
-
Rosen, M.A.1
Patel, D.J.2
-
35
-
-
0003903343
-
-
2nd edit. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edit. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
36
-
-
0023644938
-
Determination of the RNA secondary structure that regulates lysis-gene expression in bacteriophage MS2
-
Schmidt, B. F., Berkhout, B., Overbeek, G. P., van Strien, A. & van Duin, J. (1987). Determination of the RNA secondary structure that regulates lysis-gene expression in bacteriophage MS2. J. Mol. Biol. 195, 505-516.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 505-516
-
-
Schmidt, B.F.1
Berkhout, B.2
Overbeek, G.P.3
Van Strien, A.4
Van Duin, J.5
-
37
-
-
0017227834
-
Site specific interaction of QP host factor and ribosomal protein S1 with QP and R17 RNAs
-
Senear, A. W. & Steitz, J. A. (1976). Site specific interaction of QP host factor and ribosomal protein S1 with QP and R17 RNAs. J. Biol. Chem. 251, 1902-1912.
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 1902-1912
-
-
Senear, A.W.1
Steitz, J.A.2
-
38
-
-
0027432958
-
A two-dimensional model at the nucleotide level for the central hairpin of coliphage QP RNA
-
Skripkin, E. A. & Jacobson, A. B. (1993). A two-dimensional model at the nucleotide level for the central hairpin of coliphage QP RNA. J. Mol. Biol. 233, 245-260.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 245-260
-
-
Skripkin, E.A.1
Jacobson, A.B.2
-
39
-
-
0025034643
-
Secondary structure of the central region of bacteriophage MS2 RNA. Conservation and biological significance
-
Skripkin, E. A., Adhin, M. R., de Smit, M. H. & van Duin, J. (1990). Secondary structure of the central region of bacteriophage MS2 RNA. Conservation and biological significance. J. Mol. Biol. 211, 447-463.
-
(1990)
J. Mol. Biol.
, vol.211
, pp. 447-463
-
-
Skripkin, E.A.1
Adhin, M.R.2
De Smit, M.H.3
Van Duin, J.4
-
40
-
-
0017902199
-
QP DNA-containing hybrid plasmids give rise to QP phage formation in the bacterial host
-
Taniguchi, T., Palmieri, M. & Weissmann, C. (1978). QP DNA-containing hybrid plasmids give rise to QP phage formation in the bacterial host. Nature (London), 274, 223-228.
-
(1978)
Nature (London)
, vol.274
, pp. 223-228
-
-
Taniguchi, T.1
Palmieri, M.2
Weissmann, C.3
-
41
-
-
0023973247
-
CUUCGG hairpins: Extraordinarily stable RNA secondary structures associated with various biochemical processes
-
Tuerk, C., Gauss, P., Thermes, C., Groebe, D. R., Gayle, M., Guild, N., Stormo, G., d’Aubenton-Carafa, Y, Uhlenbeck, O. C., Tinoco I., Jr, Brody, E. & Gold, L. (1988). CUUCGG hairpins: Extraordinarily stable RNA secondary structures associated with various biochemical processes. Proc. Nat. Acad. Sci., U.S.A. 85, 1364-1368.
-
(1988)
Proc. Nat. Acad. Sci., U.S.A.
, vol.85
, pp. 1364-1368
-
-
Tuerk, C.1
Gauss, P.2
Thermes, C.3
Groebe, D.R.4
Gayle, M.5
Guild, N.6
Stormo, G.7
D’aubenton-Carafa, Y.8
Uhlenbeck, O.C.9
Tinoco, I.10
Brody, E.11
Gold, L.12
-
42
-
-
0000694197
-
The single-stranded RNA bacteriophages
-
Fraenkel-Conrad H. & Wagner R., Plenum, New York
-
van Duin, J. (1988). The single-stranded RNA bacteriophages. In The Viruses (Fraenkel-Conrad H. & Wagner R., eds), pp. 116-166. Plenum, New York.
-
(1988)
The Viruses
, pp. 116-166
-
-
Van Duin, J.1
-
43
-
-
0027207557
-
Translational control by a long-range RNA-RNA interaction: A base-pair substitution analysis
-
van Himbergen, J., van Geffen, B. & van Duin, J. (1993). Translational control by a long-range RNA-RNA interaction: a base-pair substitution analysis. Nucl. Acids Res. 21, 1713-1717.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 1713-1717
-
-
Van Himbergen, J.1
Van Geffen, B.2
Van Duin, J.3
-
44
-
-
0017281104
-
The binding site for coat protein on bacteriophage QP RNA
-
Weber, H. (1976). The binding site for coat protein on bacteriophage QP RNA. Biochim. Biophys. Acta, 418, 175-183.
-
(1976)
Biochim. Biophys. Acta
, vol.418
, pp. 175-183
-
-
Weber, H.1
-
45
-
-
0024576030
-
Specific RNA binding by QP coat protein
-
Witherell, G. W. & Uhlenbeck, O. C. (1989). Specific RNA binding by QP coat protein. Biochemistry, 28, 71-76.
-
(1989)
Biochemistry
, vol.28
, pp. 71-76
-
-
Witherell, G.W.1
Uhlenbeck, O.C.2
-
46
-
-
0025982691
-
Specific interaction between RNA phage coat proteins and RNA
-
Witherell, G. W., Gott, J. M. & Uhlenbeck, O. C. (1991). Specific interaction between RNA phage coat proteins and RNA. Progr. Nucl. Acid Res. Mol. Biol. 40, 185-220.
-
(1991)
Progr. Nucl. Acid Res. Mol. Biol.
, vol.40
, pp. 185-220
-
-
Witherell, G.W.1
Gott, J.M.2
Uhlenbeck, O.C.3
-
47
-
-
0021012648
-
Detailed analysis of the higher-order structure of 16 S-like ribosomal ribonucleic acids
-
Woese, C. R., Gutell, R., Gupta, R. & Noller, H. F. (1983). Detailed analysis of the higher-order structure of 16 S-like ribosomal ribonucleic acids. Microbiol. Rev. 47, 621-669.
-
(1983)
Microbiol. Rev.
, vol.47
, pp. 621-669
-
-
Woese, C.R.1
Gutell, R.2
Gupta, R.3
Noller, H.F.4
-
48
-
-
0025047647
-
Architecture of ribosomal RNA: Constraints on the sequence of “tetra-loops”
-
Woese, C. R., Winker, S. & Gutell, R. R. (1990). Architecture of ribosomal RNA: constraints on the sequence of “tetra-loops”. Proc. Nat. Acad. Sci., U.S.A. 87, 8467-8471.
-
(1990)
Proc. Nat. Acad. Sci., U.S.A.
, vol.87
, pp. 8467-8471
-
-
Woese, C.R.1
Winker, S.2
Gutell, R.R.3
-
49
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker, M. (1989). On finding all suboptimal foldings of an RNA molecule. Science, 244, 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
50
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker, M. & Stiegler, P. (1981). Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucl. Acids Res. 9, 133-148.
-
(1981)
Nucl. Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|