-
2
-
-
37749006919
-
The amazing diversity of cap-independent translation elements in the 3′-untranslated regions of plant viral RNAs
-
Miller WA, Wang Z, Treder K. The amazing diversity of cap-independent translation elements in the 3′-untranslated regions of plant viral RNAs. Biochem Soc Trans 2007; 35:1629-33.
-
(2007)
Biochem Soc Trans
, vol.35
, pp. 1629-1633
-
-
Miller, W.A.1
Wang, Z.2
Treder, K.3
-
3
-
-
33646782967
-
Cap-independent translation of plant viral RNAs
-
DOI 10.1016/j.virusres.2005.10.010, PII S0168170205003230
-
Kneller EL, Rakotondrafara AM, Miller WA. Cap-independent translation of plant viral RNAs. Virus Res 2006; 119:63-75. (Pubitemid 43765971)
-
(2006)
Virus Research
, vol.119
, Issue.1
, pp. 63-75
-
-
Kneller, E.L.P.1
Rakotondrafara, A.M.2
Miller, W.A.3
-
4
-
-
29144502178
-
Translational control in positive strand RNA plant viruses
-
DOI 10.1016/j.virol.2005.09.031, PII S0042682205005799
-
Dreher TW, Miller WA. Translational control in positive strand RNA plant viruses. Virology 2006; 344:185-97. (Pubitemid 41814461)
-
(2006)
Virology
, vol.344
, Issue.1
, pp. 185-197
-
-
Dreher, T.W.1
Miller, W.A.2
-
6
-
-
0034691523
-
Synthesis of subgenomic RNAs by positive-strand RNA viruses
-
DOI 10.1006/viro.2000.0421
-
Miller WA, Koev G. Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology 2000; 273:1-8. (Pubitemid 30602002)
-
(2000)
Virology
, vol.273
, Issue.1
, pp. 1-8
-
-
Miller, W.A.1
Koev, G.2
-
7
-
-
67349247410
-
Characterization of the subgenomic RNAs produced by Pelargonium flower break virus: Identification of two novel RNA species
-
Rico P, Hernandez C. Characterization of the subgenomic RNAs produced by Pelargonium flower break virus: Identification of two novel RNA species. Virus Res 2009; 142:100-7.
-
(2009)
Virus Res
, vol.142
, pp. 100-107
-
-
Rico, P.1
Hernandez, C.2
-
9
-
-
0034141347
-
Maize chlorotic mottle machlomovirus expresses its coat protein from a 1.47-kb subgenomic RNA and makes a 0.34-kb subgenomic RNA
-
DOI 10.1006/viro.1999.0107
-
Scheets K. Maize chlorotic mottle machlomovirus expresses its coat protein from a 1.47 kb subgenomic RNA and makes a 0.3 kb subgenomic RNA. Virology 2000; 267:90-101. (Pubitemid 30094156)
-
(2000)
Virology
, vol.267
, Issue.1
, pp. 90-101
-
-
Scheets, K.1
-
10
-
-
53749095628
-
A viral noncoding RNA generated by cis-element-mediated protection against 5′→3′ RNA decay represses both cap-independent and cap-dependent translation
-
Iwakawa HO, Mizumoto H, Nagano H, Imoto Y, Takigawa K, Sarawaneeyaruk S, et al. A viral noncoding RNA generated by cis-element-mediated protection against 5′→3′ RNA decay represses both cap-independent and cap-dependent translation. J Virol 2008; 82:10162-74.
-
(2008)
J Virol
, vol.82
, pp. 10162-10174
-
-
Iwakawa, H.O.1
Mizumoto, H.2
Nagano, H.3
Imoto, Y.4
Takigawa, K.5
Sarawaneeyaruk, S.6
-
11
-
-
0035197896
-
Effects of inactivation of the coat protein and movement genes of Tomato bushy stunt virus on early accumulation of genomic and subgenomic RNAs
-
Qiu W, Scholthof HB. Effects of inactivation of the coat protein and movement genes of Tomato bushy stunt virus on early accumulation of genomic and subgenomic RNAs. J Gen Virol 2001; 82:3107-14. (Pubitemid 33107527)
-
(2001)
Journal of General Virology
, vol.82
, Issue.12
, pp. 3107-3114
-
-
Qiu, W.1
Scholthof, H.B.2
-
12
-
-
0026733620
-
Subgenomic RNAs mediate expression of cistrons located internally on the genomic RNA of tobacco necrosis virus strain A
-
Meulewaeter F, Cornelissen M, Van Emmelo J. Subgenomic RNAs mediate expression of cistrons located internally on the genomic RNA of tobacco necrosis virus strain A. J Virol 1992; 66:6419-28.
-
(1992)
J Virol
, vol.66
, pp. 6419-6428
-
-
Meulewaeter, F.1
Cornelissen, M.2
Van Emmelo, J.3
-
13
-
-
38649086699
-
Subgenomic mRNA transcription in an aureusvirus: Down-regulation of transcription and evolution of regulatory RNA elements
-
DOI 10.1016/j.virol.2007.09.035, PII S0042682207006319
-
Xu W, White, KA. Subgenomic mRNA transcription in an aureusvirus: downregulation of transcription and evolution of regulatory RNA elements. Virology 2008; 371:430-8. (Pubitemid 351173226)
-
(2008)
Virology
, vol.371
, Issue.2
, pp. 430-438
-
-
Xu, W.1
White, K.A.2
-
14
-
-
0032899861
-
Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus
-
DOI 10.1017/S1355838299982080
-
Zhang G, Slowinski V, White KA. Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus. RNA 1999; 5:550-61. (Pubitemid 29169205)
-
(1999)
RNA
, vol.5
, Issue.4
, pp. 550-561
-
-
Zhang, G.1
Slowinski, V.2
White, K.A.3
-
15
-
-
0030957051
-
Analysis of the two subgenomic RNA promoters for turnip crinkle virus in vivo and in vitro
-
DOI 10.1006/viro.1997.8550
-
Wang J, Simon AE. Analysis of the two subgenomic RNA promoters for turnip crinkle virus in vivo and in vitro. Virology 1997; 232:174-86. (Pubitemid 27244475)
-
(1997)
Virology
, vol.232
, Issue.1
, pp. 174-186
-
-
Wang, J.1
Simon, A.E.2
-
16
-
-
20244377943
-
Spatio-temporal analysis of the RNAs, coat and movement (p7) proteins of Carnation mottle virus in Chenopodium quinoa plants
-
DOI 10.1099/vir.0.18715-0
-
Garcia-Castillo S, Sanchez-Pina MA, Pallas V. Spatiotemporal analysis of the RNAs, coat and movement (p7) proteins of Carnation mottle virus in Chenopodium quinoa plants. J Gen Virol 2003; 84:745-9. (Pubitemid 36267149)
-
(2003)
Journal of General Virology
, vol.84
, Issue.3
, pp. 745-749
-
-
Garcia-Castillo, S.1
Sanchez-Pina, M.A.2
Pallas, V.3
-
17
-
-
0032493916
-
RNA-mediated trans-activation of transcription from a viral RNA
-
DOI 10.1126/science.281.5378.829
-
Sit TL, Vaewhongs AA, Lommel SA. RNA-mediated trans-activation of transcription from a viral RNA. Science 1998; 281:829-32. (Pubitemid 28376044)
-
(1998)
Science
, vol.281
, Issue.5378
, pp. 829-832
-
-
Sit, T.L.1
Vaewhongs, A.A.2
Lommel, S.A.3
-
18
-
-
0036479122
-
An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus
-
Choi IR, White KA. An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus. J Biol Chem 2002; 277:3760-6.
-
(2002)
J Biol Chem
, vol.277
, pp. 3760-3766
-
-
Choi, I.R.1
White, K.A.2
-
19
-
-
77954532016
-
Evidence for a premature termination mechanism of subgenomic mRNA transcription in a Carmovirus
-
Wu B, Oliveri S, Mandic J, White KA. Evidence for a premature termination mechanism of subgenomic mRNA transcription in a Carmovirus. J Virol 2010; 84:7904-7.
-
(2010)
J Virol
, vol.84
, pp. 7904-7907
-
-
Wu, B.1
Oliveri, S.2
Mandic, J.3
White, K.A.4
-
20
-
-
0036942666
-
The premature termination model: A possible third mechanism for subgenomic mRNA transcription in (+)-strand RNA viruses
-
DOI 10.1006/viro.2002.1732
-
White KA. The premature termination model: a possible third mechanism for subgenomic mRNA transcription in (+)-strand RNA viruses. Virology 2002; 304:147-54. (Pubitemid 36069157)
-
(2002)
Virology
, vol.304
, Issue.2
, pp. 147-154
-
-
White, K.A.1
-
21
-
-
0028892709
-
Deletion analysis of the promoter for the cucumber necrosis virus 0.9 kb subgenomic RNA
-
Johnston JC, Rochon DM. Deletion analysis of the promoter for the cucumber necrosis virus 0.9 kb subgenomic RNA. Virology 1995; 14:100-9.
-
(1995)
Virology
, vol.14
, pp. 100-109
-
-
Johnston, J.C.1
Rochon, D.M.2
-
22
-
-
0033585382
-
Minimal sequence and structural requirements of a subgenomic RNA promoter for turnip crinkle virus
-
DOI 10.1006/viro.1998.9538
-
Wang J, Carpenter CD, Simon AE. Minimal sequence and structural requirements of a subgenomic RNA promoter for turnip crinkle virus. Virology 1999; 253:327-36. (Pubitemid 29393318)
-
(1999)
Virology
, vol.253
, Issue.2
, pp. 327-336
-
-
Wang, J.1
Carpenter, C.D.2
Simon, A.E.3
-
23
-
-
33645231461
-
Analyses of subgenomic promoters of Hibiscus chlorotic ringspot virus and demonstration of 5′ untranslated region and 3'-terminal sequences functioning as subgenomic promoters
-
Li W, Wong SM. Analyses of subgenomic promoters of Hibiscus chlorotic ringspot virus and demonstration of 5′ untranslated region and 3'-terminal sequences functioning as subgenomic promoters. J Virol 2006; 80:3395-405.
-
(2006)
J Virol
, vol.80
, pp. 3395-3405
-
-
Li, W.1
Wong, S.M.2
-
24
-
-
0021933941
-
Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA
-
DOI 10.1038/313068a0
-
Miller WA, Dreher TW, Hall TC. Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA. Nature 1985; 313:68-70. (Pubitemid 15192309)
-
(1985)
Nature
, vol.313
, Issue.5997
, pp. 68-70
-
-
Miller, W.A.1
Dreher, T.W.2
Hall, T.C.3
-
25
-
-
33847196082
-
A multicomponent RNA-based control system regulates subgenomic mRNA transcription in a tombusvirus
-
Lin H, Xu W, White KA. A multicomponent RNA-based control system regulates subgenomic mRNA transcription in a tombusvirus. J Virol 2007; 81:2429-39.
-
(2007)
J Virol
, vol.81
, pp. 2429-2439
-
-
Lin, H.1
Xu, W.2
White, K.A.3
-
26
-
-
11144229017
-
The Red clover necrotic mosaic virus RNA2 trans-activator is also a cis-Acting RNA2 replication element
-
DOI 10.1128/JVI.79.2.978-986.2005
-
Tatsuta M, Mizumoto H, Kaido M, Mise K, Okuno T. The red clover necrotic mosaic virus RNA2 transactivator is also a cis-acting RNA2 replication element. J Virol 2005; 79:978-86. (Pubitemid 40053881)
-
(2005)
Journal of Virology
, vol.79
, Issue.2
, pp. 978-986
-
-
Tatsuta, M.1
Mizumoto, H.2
Kaido, M.3
Mise, K.4
Okuno, T.5
-
27
-
-
58549086327
-
The Red clover necrotic mosaic virus origin of assembly is delimited to the RNA-2 trans-activator
-
Basnayake VR, Sit TL, Lommel SA. The Red clover necrotic mosaic virus origin of assembly is delimited to the RNA-2 trans-activator. Virology 2009; 384:169-78.
-
(2009)
Virology
, vol.384
, pp. 169-178
-
-
Basnayake, V.R.1
Sit, T.L.2
Lommel, S.A.3
-
28
-
-
4444303052
-
A complex network of RNA-RNA interactions controls subgenomic mRNA transcription in a tombusvirus
-
DOI 10.1038/sj.emboj.7600336
-
Lin H, White KA. A complex network of RNA-RNA interactions controls subgenomic mRNA transcription in a tombusvirus. EMBO J 2004; 23:3365-74. (Pubitemid 39209160)
-
(2004)
EMBO Journal
, vol.23
, Issue.16
, pp. 3365-3374
-
-
Lin, H.-X.1
White, K.A.2
-
29
-
-
41949136964
-
Higher-order RNA structural requirements and small-molecule induction of tombusvirus subgenomic mRNA transcription
-
DOI 10.1128/JVI.02416-07
-
Wang S, Mortazavi L, White KA. Higher-order RNA structural requirements and small-molecule induction of Tombusvirus subgenomic mRNA transcription. J Virol 2008; 82:3864-71. (Pubitemid 351521223)
-
(2008)
Journal of Virology
, vol.82
, Issue.8
, pp. 3864-3871
-
-
Wang, S.1
Mortazavi, L.2
White, K.A.3
-
30
-
-
37149001670
-
Uncoupling RNA virus replication from transcription via the polymerase: Functional and evolutionary insights
-
DOI 10.1038/sj.emboj.7601931, PII 7601931
-
Wu B, White KA. Uncoupling RNA virus replication from transcription via the polymerase: functional and evolutionary insights. EMBO J 2007; 26:5120-30. (Pubitemid 350261293)
-
(2007)
EMBO Journal
, vol.26
, Issue.24
, pp. 5120-5130
-
-
Wu, B.1
White, K.A.2
-
31
-
-
0035834784
-
Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription
-
Choi IR, Ostrovsky M, Zhang G, White KA. Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription. J Biol Chem 2001; 276:41761-8.
-
(2001)
J Biol Chem
, vol.276
, pp. 41761-41768
-
-
Choi, I.R.1
Ostrovsky, M.2
Zhang, G.3
White, K.A.4
-
32
-
-
0037867847
-
Enhancement of RNA synthesis by promoter duplication in tombusviruses
-
DOI 10.1016/S0042-6822(03)00105-3, PII S0042682203001053
-
Panavas T, Panaviene Z, Pogany J, Nagy PD. Enhancement of RNA synthesis by promoter duplication in tombusviruses. Virology 2003; 310:118-29. (Pubitemid 38352587)
-
(2003)
Virology
, vol.310
, Issue.1
, pp. 118-129
-
-
Panavas, T.1
Panaviene, Z.2
Pogany, J.3
Nagy, P.D.4
-
33
-
-
17644361996
-
Complete nucleotide sequence and genome organization of Pelargonium line pattern virus and its relationship with the family Tombusviridae
-
DOI 10.1007/s00705-004-0464-y
-
Castano A, Hernandz C. Complete nucleotide sequence and genome organization of Pelargonium line pattern virus and its relationship with the family Tombusviridae. Arch Virol 2005; 150:949-65. (Pubitemid 40564428)
-
(2005)
Archives of Virology
, vol.150
, Issue.5
, pp. 949-965
-
-
Castano, A.1
Hernandez, C.2
-
34
-
-
72949119532
-
Complete nucleotide sequence and genome organization of Calibrachoa mottle virus (CbMV)-a new species in the genus Carmovirus of the family Tombusviridae
-
Gulati-Sakhuja A, Liu HY. Complete nucleotide sequence and genome organization of Calibrachoa mottle virus (CbMV)-a new species in the genus Carmovirus of the family Tombusviridae. Virus Res 2010; 147:216-23.
-
(2010)
Virus Res
, vol.147
, pp. 216-223
-
-
Gulati-Sakhuja, A.1
Liu, H.Y.2
-
35
-
-
0037473344
-
The overlapping RNA-binding domains of p33 and p92 replicase proteins are essential for tombusvirus replication
-
Panaviene Z, Baker JM, Nagy PD. The overlapping RNA-binding domains of p33 and p92 replicase proteins are essential for tombusvirus replication. Virology 2003; 308:191-205.
-
(2003)
Virology
, vol.308
, pp. 191-205
-
-
Panaviene, Z.1
Baker, J.M.2
Nagy, P.D.3
-
36
-
-
70349279947
-
RNA-based regulation of transcription and translation of aureusvirus subgenomic mRNA1
-
Xu W, White KA. RNA-based regulation of transcription and translation of aureusvirus subgenomic mRNA1. J Virol 2009; 83:10096-105.
-
(2009)
J Virol
, vol.83
, pp. 10096-10105
-
-
Xu, W.1
White, K.A.2
-
37
-
-
33749043245
-
Analysis of the subgenomic RNAs and the small open reading frames of Beet black scorch virus
-
DOI 10.1099/vir.0.81928-0
-
Yuan X, Cao Y, Xi D, Guo L, Han C, Li D, et al. Analysis of the subgenomic RNAs and the small open reading frames of Beet black scorch virus. J Gen Virol 2006; 87:3077-86. (Pubitemid 44463917)
-
(2006)
Journal of General Virology
, vol.87
, Issue.10
, pp. 3077-3086
-
-
Yuan, X.1
Cao, Y.2
Xi, D.3
Guo, L.4
Han, C.5
Li, D.6
Zhai, Y.7
Yu, J.8
-
38
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003; 31:3406-15. (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
-
39
-
-
0036200419
-
Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication
-
DOI 10.1128/JVI.76.8.3905-3919.2002
-
Lindenbach BD, Sgro JY, Ahlquist P. Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication. J Virol 2002; 76:3905-19. (Pubitemid 34250555)
-
(2002)
Journal of Virology
, vol.76
, Issue.8
, pp. 3905-3919
-
-
Lindenbach, B.D.1
Sgro, J.-Y.2
Ahlquist, P.3
-
40
-
-
0035919640
-
Characterization of the cis-acting elements controlling subgenomic mRNAs of Citrus tristeza virus: Production of positive- And negative-stranded 3′-terminal and positive-stranded 5′-terminal RNAs
-
DOI 10.1006/viro.2001.0987
-
Gowda S, Satyanarayana T, Ayllón MA, Albiach-Martí MR, Mawassi M, Rabindran S, et al. Characterization of the cis-acting elements controlling subgenomic mRNAs of citrus tristeza virus: production of positive-and negative-stranded 3'-terminal and positive-stranded 5′-terminal RNAs. Virology 2001; 286:134-51. (Pubitemid 32675474)
-
(2001)
Virology
, vol.286
, Issue.1
, pp. 134-151
-
-
Gowda, S.1
Satyanarayana, T.2
Ayllon, M.A.3
Albiach-Marti, M.R.4
Mawassi, M.5
Rabindran, S.6
Garnsey, S.M.7
Dawson, W.O.8
-
41
-
-
0037011138
-
Discontinuous and non-discontinuous subgenomic RNA transcription in a nidovirus
-
DOI 10.1093/emboj/cdf635
-
van Vliet AL, Smits SL, Rottier PJ, de Groot RJ. Discontinuous and non-discontinuous subgenomic RNA transcription in a nidovirus. EMBO J 2002; 21:6571-80. (Pubitemid 35448434)
-
(2002)
EMBO Journal
, vol.21
, Issue.23
, pp. 6571-6580
-
-
Van Vliet, A.L.W.1
Smits, S.L.2
Rottier, P.J.M.3
De Groot, R.J.4
-
42
-
-
0036315954
-
Barley yellow dwarf virus: Luteoviridae or Tombusviridae?
-
DOI 10.1046/j.1364-3703.2002.00112.x
-
Miller WA, Liu S, Beckett R. Barley yellow dwarf virus: Luteoviridae or Tombusviridae? Mol Plant Pathol 2002; 3:177-83. (Pubitemid 34824969)
-
(2002)
Molecular Plant Pathology
, vol.3
, Issue.4
, pp. 177-183
-
-
Miller, W.A.1
Liu, S.2
Beckett, R.3
-
43
-
-
31944444206
-
Structure and prevalence of replication silencer-3′ terminus RNA interactions in Tombusviridae
-
DOI 10.1016/j.virol.2005.09.008, PII S0042682205005696
-
Na H, White KA. Structure and prevalence of replication silencer-3′ terminus RNA interactions in Tombusviridae. Virology 2006; 345:305-16. (Pubitemid 43189892)
-
(2006)
Virology
, vol.345
, Issue.2
, pp. 305-316
-
-
Na, H.1
White, K.A.2
-
44
-
-
0028224199
-
High-resolution molecular discrimination by RNA
-
Jenison RD, Gill SC, Pardi A, Polisky B. High-resolution molecular discrimination by RNA. Science 1994; 263:1425-9. (Pubitemid 24137828)
-
(1994)
Science
, vol.263
, Issue.5152
, pp. 1425-1429
-
-
Jenison, R.D.1
Gill, S.C.2
Pardi, A.3
Polisky, B.4
|