Structural features underlying the selective cleavage of a novel exo-type maltose-forming amylase from Pyrococcus sp. ST04

Acta Crystallographica Section D: Biological Crystallography

Volumn 70, Issue 6, 2014, Pages 1659-1668

  Park, Kwang Hyun ^a,b   Jung, Jong Hyun ^c,d   Park, Sung Goo ^a   Lee, Myeong Eun ^c   Holden, James F ^e   Park, Cheon Seok ^c   Woo, Eui Jeon ^a,b  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b University of Science and Technology (UST)   (South Korea)

^c Kyung Hee University   (South Korea)

^d Korea Atomic Energy Research Institute   (South Korea)

^e UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

exo type hydrolase; glycoside hydrolase family 57; maltose forming amylase; Pyrococcus sp. ST04

Indexed keywords

AMYLASE; MALTOSE;

CHEMICAL STRUCTURE; CHEMISTRY; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; ENZYMOLOGY; GENETICS; METABOLISM; PROTEIN CONFORMATION; PROTEIN DEGRADATION; PYROCOCCUS; SITE DIRECTED MUTAGENESIS;

AMYLASES; CATALYTIC DOMAIN; MALTOSE; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION; PROTEOLYSIS; PYROCOCCUS; SUBSTRATE SPECIFICITY;

EID: 84902470011     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004714006567     Document Type: Article

References (30)

1. Abe, A., Yoshida, H., Tonozuka, T., Sakano, Y. & Kamitori, S. (2005). FEBS J. 272, 6145-6153.
2. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
3. Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V. & Henrissat, B. (2009). Nucleic Acids Res. 37, D233-D238.
4. Dickmanns, A., Ballschmiter, M., Liebl, W. & Ficner, R. (2006). Acta Cryst. D62, 262-270.
5. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
6. Imamura, H., Fushinobu, S., Jeon, B.-S., Wakagi, T. & Matsuzawa, H. (2001). Biochemistry, 40, 12400-12406.
7. Imamura, H., Fushinobu, S., Yamamoto, M., Kumasaka, T., Jeon, B.-S., Wakagi, T. & Matsuzawa, H. (2003). J. Biol. Chem. 278, 19378-19386.
8. Janeček, S. & Blesák, K. (2011). Protein J. 30, 429-435.
9. Janeček, S. & Kuchtová, A. (2012). FEBS Lett. 586, 3360-3366.
10. Jeon, E.-J., Jung, J.-H., Seo, D.-H., Jung, D.-H., Holden, J. F. & Park, C.-S. (2014). Enzyme Microb. Technol. 60, 9-15.
11. Jun, S.-Y., Kim, J.-S., Choi, K.-H., Cha, J. & Ha, N.-C. (2013). Acta Cryst. D69, 442-450.
12. Jung, J.-H., Lee, J.-H., Holden, J. F., Seo, D.-H., Shin, H., Kim, H.-Y., Kim, W., Ryu, S. & Park, C.-S. (2012). J. Bacteriol. 194, 4434-4435.
13. Jung, J.-H., Seo, D.-H., Holden, J. F. & Park, C.-S. (2014). Appl. Microbiol. Biotechnol. 98, 2121-2131.
14. Kim, J.-S., Cha, S.-S., Kim, H.-J., Kim, T.-J., Ha, N.-C., Oh, S.-T., Cho, H.-S., Cho, M.-J., Kim, M.-J., Lee, H.-S., Kim, J.-W., Choi, K. Y., Park, K.-H. & Oh, B.-H. (1999). J. Biol. Chem. 274, 26279-26286.
15. MacGregor, E. A., Janecek, S. & Svensson, B. (2001). Biochim. Biophys. Acta, 1546, 1-20.
16. Mikami, B., Adachi, M., Kage, T., Sarikaya, E., Nanmori, T., Shinke, R. & Utsumi, S. (1999). Biochemistry, 38, 7050-7061.
17. Mikami, B., Hehre, E. J., Sato, M., Katsube, Y., Hirose, M., Morita, Y. & Sacchettini, J. C. (1993). Biochemistry, 32, 6836-6845.
18. Miyake, H., Kurisu, G., Kusunoki, M., Nishimura, S., Kitamura, S. & Nitta, Y. (2003). Biochemistry, 42, 5574-5581.
19. Niehaus, F., Bertoldo, C., Kahler, M. & Antranikian, G. (1999). Appl. Microbiol. Biotechnol. 51, 711-729.
20. Oslowski, D. M., Jung, J.-H., Seo, D.-H., Park, C.-S. & Holden, J. F. (2011). Appl. Environ. Microbiol. 77, 3169-3173.
21. Palomo, M., Pijning, T., Booiman, T., Dobruchowska, J. M., van der Vlist, J., Kralj, S., Planas, A., Loos, K., Kamerling, J. P., Dijkstra, B. W., van der Maarel, M. J., Dijkhuizen, L. & Leemhuis, H. (2011). J. Biol. Chem. 286, 3520-3530.
22. Pijning, T., Vujičić-Žagar, A., Kralj, S., Dijkhuizen, L. & Dijkstra, B. W. (2012). Acta Cryst. F68, 1448-1454.
23. Przylas, I., Tomoo, K., Terada, Y., Takaha, T., Fujii, K., Saenger, W. & Sträter, N. (2000). J. Mol. Biol. 296, 873-886.
24. Rostkowski, M., Olsson, M. H., Søndergaard, C. R. & Jensen, J. H. (2011). BMC Struct. Biol. 11, 6.
25. Roujeinikova, A., Raasch, C., Sedelnikova, S., Liebl,W. & Rice, D.W. (2002). J. Mol. Biol. 321, 149-162.
26. Santos, C. R., Tonoli, C. C., Trindade, D. M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R. K. & Murakami, M. T. (2011). Proteins, 79, 547-557.
27. Ver Eecke, H. C., Kelley, D. S. & Holden, J. F. (2009). Appl. Environ. Microbiol. 75, 242-245.
28. Xavier, K. B., Peist, R., Kossmann, M., Boos, W. & Santos, H. (1999). J. Bacteriol. 181, 3358-3367.
29. Yamamoto, K., Miyake, H., Kusunoki, M. & Osaki, S. (2010). FEBS J. 277, 4205-4214.
30. Zona, R., Chang-Pi-Hin, F., O'Donohue, M. J. & Janeček, S. (2004). Eur. J. Biochem. 271, 2863-2872.