A proteomic analysis to identify cold acclimation associated proteins in wild wheat (Triticum urartu L.)

Molecular Biology Reports

Volumn 41, Issue 6, 2014, Pages 3897-3905

  Gharechahi, Javad ^a   Alizadeh, Houshang ^b   Naghavi, Mohammad Reza ^b   Sharifi, Golandam ^c  

^a BAQIYATALLAH UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b UNIVERSITY OF TEHRAN   (Iran)

^c Iranian Research Institute for Information Science and Technology   (Iran)

Author keywords

Cold acclimation; Low temperature; Mass spectrometry; Proteomics; Triticum urartu; Two dimensional gel electrophoresis (2 DE)

Indexed keywords

COLD REGULATED PROTEIN; OXALATE OXIDASE; OXIDOREDUCTASE; OXYGEN EVOLVING ENHANCER PROTEIN; PATHOGENESIS RELATED PROTEIN; PROTEIN LEA; RAB RELATED COR PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; PROTEOME;

ARTICLE; COLD ACCLIMATIZATION; COLD EXPOSURE; COLD STRESS; COLD TOLERANCE; CONTROLLED STUDY; DIPLOIDY; DOWN REGULATION; FREEZING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; OXIDATIVE STRESS; PHOTOSYNTHESIS; PLANT GROWTH; PROTEIN ANALYSIS; PROTEIN CONTENT; PROTEIN DATABASE; PROTEIN FUNCTION; PROTEOMICS; TRITICUM URARTU; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION; WHEAT; WILD SPECIES; ACCLIMATIZATION; COLD; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MASS SPECTROMETRY; PLANT LEAF; SEEDLING;

TRITICUM AESTIVUM; TRITICUM URARTU;

ACCLIMATIZATION; COLD TEMPERATURE; GENE EXPRESSION REGULATION, PLANT; PLANT LEAVES; PROTEOME; PROTEOMICS; SEEDLING; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRITICUM;

EID: 84902383850     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3257-8     Document Type: Article

References (62)

1. Hale MG, Orcutt DM (1987) The physiology of plants under stress. Wiley, New York
2. Yadav S (2010) Cold stress tolerance mechanisms in plants. A review. Agron Sustain Dev 30:515-527
3. Guy CL (1990) Cold acclimation and freezing stress tolerance: role of protein metabolism. Annu Rev Plant Physiol Plant Mol Biol 41:187-223
4. Atici O, Nalbantoglu B (2003) Antifreeze proteins in higher plants. Phytochemistry 64:1187-1196 (Pubitemid 37442426)
5. Griffith M, Antikainen M, Hon W-C, Pihakaski-Maunsbach K, Yu X-M, Chun JU, Yang DSC (1997) Antifreeze proteins in winter rye. Physiol Plant 100:327-332
6. Janská A, Maršík P, Zelenková S, Ovesná J (2010) Cold stress and acclimation - what is important for metabolic adjustment? Plant Biol 12:395-405
7. Xin Z (2000) Cold comfort farm: the acclimation of plants to freezing temperatures. Plant Cell Environ 23:893-902
8. Uemura M, Joseph RA, Steponkus PL (1995) Cold acclimation of Arabidopsis thaliana (effect on plasma membrane lipid composition and freeze-induced lesions). Plant Physiol 109:15-30
9. Sharma P, Sharma N, Deswal R (2005) The molecular biology of the low-temperature response in plants. BioEssays 27:1048-1059 (Pubitemid 41608961)
10. Chinnusamy V, Zhu J, Zhu JK (2006) Gene regulation during cold acclimation in plants. Physiol Plant 126:52-61
11. Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53:247-273
12. Thomashow MF (1999) Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Annu Rev Plant Physiol Plant Mol Biol 50:571-599
13. Renaut J, Hausman JF, Wisniewski ME (2006) Proteomics and low-temperature studies: bridging the gap between gene expression and metabolism. Physiol Plant 126:97-109
14. Kreps JA, Wu Y, Chang H-S, Zhu T, Wang X, Harper JF (2002) Transcriptome changes for Arabidopsis in response to salt osmotic, and cold stress. Plant Physiol 130:2129-2141 (Pubitemid 36035209)
15. Fowler S, Thomashow MF (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell Online 14:1675-1690 (Pubitemid 35002928)
16. Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 31:279-292 (Pubitemid 34922963)
17. Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Monitoring expression profiles of rice genes under cold drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol 133:1755-1767 (Pubitemid 38047306)
18. Maruyama K, Takeda M, Kidokoro S, Yamada K, Sakuma Y, Urano K, Fujita M, Yoshiwara K, Matsukura S, Morishita Y, Sasaki R, Suzuki H, Saito K, Shibata D, Shinozaki K, Yamaguchi-Shinozaki K (2009) Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol 150:1972-1980
19. Greenbaum D, Colangelo C, Williams K, Gerstein M (2003) Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 4:117
20. Pradet-Balade B, Boulme F, Beug H, Mullner EW, Garcia-Sanz JA (2001) Translation control: bridging the gap between genomics and proteomics? Trends Biochem Sci 26:225-229 (Pubitemid 32289240)
21. Rinalducci S, Egidi MG, Mahfoozi S, Godehkahriz SJ, Zolla L (2011) The influence of temperature on plant development in a vernalization-requiring winter wheat: a 2-DE based proteomic investigation. J Proteomics 74:643-659
22. Kosová K, Vítámvás P, Planchon S, Renaut J, Vanková R, Prášil IT (2013) Proteome analysis of cold response in spring and winter wheat (Triticum aestivum) crowns reveals similarities in stress adaptation and differences in regulatory processes between the growth habits. J Proteome Res 12:4830-4845
23. Wang X, Yang P, Zhang X, Xu Y, Kuang T, Shen S, He Y (2009) Proteomic analysis of the cold stress response in the moss Physcomitrella patens. Proteomics 9:4529-4538
24. Sarhadi E, Mahfoozi S, Hosseini SA, Salekdeh GH (2010) Cold acclimation proteome analysis reveals close link between the upregulation of low-temperature associated proteins and vernalization fulfillment. J Proteome Res 9:5658-5667
25. Brule-Babel AL, Fowler DB (1988) Genetic control of cold hardiness and vernalization requirement in winter wheat. Crop Sci 28:879-884
26. Damerval C, De Vienne D, Zivy M, Thiellement H (1986) Technical improvements in two-dimensional electrophoresis increase the level of genetic variation detected in wheat-seedling proteins. Electrophoresis 7:52-54
27. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
28. Gharechahi J, Khalili M, Hasanloo T, Salekdeh GH (2013) An integrated proteomic approach to decipher the effect of methyl jasmonate elicitation on the proteome of Silybum marianum L. hairy roots. Plant Physiol Biochem 70:115-122
29. Blum H, Beier H, Gross HJ (1987) Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis (Weinheim, Fed. Repub. Ger.) 8:93-99
30. Sharifi G, Ebrahimzadeh H, Ghareyazie B, Gharechahi J, Vatankhah E (2012) Identification of differentially accumulated proteins associated with embryogenic and non-embryogenic calli in saffron (Crocus sativus L.). Proteome Sci 10:3
31. Fowler DB, Limin AE, Ritchie JT (1999) Low-temperature tolerance in cereals: model and genetic interpretation. Crop Sci 39:626-633 (Pubitemid 29291853)
32. Olien CR (1967) Freezing stresses and survival. Annu Rev Plant Physiol 18:387-408
33. Sung S, Amasino RM (2005) Remembering winter: toward a molecular understanding of vernalization. Annu Rev Plant Biol 56:491-508 (Pubitemid 40802419)
34. Renaut J, Hausman J-F, Wisniewski ME (2006) Proteomics and low-temperature studies: bridging the gap between gene expression and metabolism. Physiol Plant 126:97-109
35. Pomeroy MK, Fowler DB (1973) Use of lethal dose temperature estimates as indices of frost tolerance for wheat cold acclimated under natural and controlled environments. Can J Plant Sci 53: 489-494
36. Kobayashi F, Takumi S, Nakata M, Ohno R, Nakamura T, Nakamura C (2004) Comparative study of the expression profiles of the Cor/Lea gene family in two wheat cultivars with contrasting levels of freezing tolerance. Physiol Plant 120:585-594 (Pubitemid 38414158)
37. Danyluk J, Perron A, Houde M, Limin A, Fowler B, Benhamou N, Sarhan F (1998) Accumulation of an acidic dehydrin in the vicinity of the plasma membrane during cold acclimation of wheat. Plant Cell 10:623-638 (Pubitemid 28542203)
38. Hundertmark M, Hincha DK (2008) LEA (late embryogenesis abundant) proteins and their encoding genes in Arabidopsis thaliana. BMC Genom 9:118
39. NDong C, Danyluk J, Wilson KE, Pocock T, Huner NP, Sarhan F (2002) Cold-regulated cereal chloroplast late embryogenesis abundant-like proteins. Molecular characterization and functional analyses. Plant Physiol 129:1368-1381
40. Tsuda K, Tsvetanov S, Takumi S, Mori N, Atanassov A, Nakamura C (2000) New members of a cold-responsive group-3 Lea/Rab-related Cor gene family from common wheat (Triticum aestivum L.). Genes Genet Syst 75:179-188
41. Xu D, Duan X, Wang B, Hong B, Ho T, Wu R (1996) Expression of a late embryogenesis abundant protein gene, HVA1 from barley confers tolerance to water deficit and salt stress in transgenic rice. Plant Physiol 110:249-257
42. Zhang L, Ohta A, Takagi M, Imai R (2000) Expression of plant group 2 and group 3 lea genes in Saccharomyces cerevisiae revealed functional divergence among LEA proteins. J Biochem 127:611-616 (Pubitemid 30238354)
43. Yu J-N, Zhang J-S, Shan L, Chen S-Y (2005) Two new group 3 LEA genes of wheat and their functional analysis in yeast. J Integr Plant Biol 47:1372-1381 (Pubitemid 43149840)
44. Rinalducci S, Egidi MG, Karimzadeh G, Jazii FR, Zolla L (2011) Proteomic analysis of a spring wheat cultivar in response to prolonged cold stress. Electrophoresis 32:1807-1818
45. Han Q, Kang G, Guo T (2013) Proteomic analysis of spring freeze-stress responsive proteins in leaves of bread wheat (Triticum aestivum L.). Plant Physiol Biochem 63:236-244
46. Fridovich I (1995) Superoxide radical and superoxide dismutases. Annu Rev Biochem 64:97-112
47. Alscher RG, Erturk N, Heath LS (2002) Role of superoxide dismutases (SODs) in controlling oxidative stress in plants. J Exp Bot 53:1331-1341 (Pubitemid 34544053)
48. Sharma P, Jha AB, Dubey RS, Pessarakli M (2012) Reactive oxygen species, oxidative damage, and antioxidative defense mechanism in plants under stressful conditions. J Bot 2012:26
49. Dat J, Vandenabeele S, Vranová E, Van Montagu M, Inzé D, Van Breusegem F (2000) Dual action of the active oxygen species during plant stress responses. CMLS Cell Mol Life Sci 57: 779-795 (Pubitemid 30392035)
50. McKersie BD, Bowley SR, Jones KS (1999) Winter survival of transgenic alfalfa overexpressing superoxide dismutase. Plant Physiol 119:839-848
51. Gupta AS, Webb RP, Holaday AS, Allen RD (1993) Overexpression of superoxide dismutase protects plants from oxidative stress (induction of ascorbate peroxidase in superoxide dismutase-overexpressing plants). Plant Physiol 103:1067-1073 (Pubitemid 2027450)
52. Hu X, Bidney DL, Yalpani N, Duvick JP, Crasta O, Folkerts O, Lu G (2003) Overexpression of a gene encoding hydrogen peroxide-generating oxalate oxidase evokes defense responses in sunflower. Plant Physiol 133:170-181 (Pubitemid 37144091)
53. May MJ, Vernoux T, Leaver C, Montagu MV, Inzé D (1998) Glutathione homeostasis in plants: implications for environmental sensing and plant development. J Exp Bot 49:649-667 (Pubitemid 28203035)
54. Yan S-P, Zhang Q-Y, Tang Z-C, Su W-A, Sun W-N (2006) Comparative proteomic analysis provides new insights into chilling stress responses in rice. Mol Cell Proteomics 5:484-496
55. Bocian A, Kosmala A, Rapacz M, Jurczyk B, Marczak L, Zwierzykowski Z (2011) Differences in leaf proteome response to cold acclimation between Lolium perenne plants with distinct levels of frost tolerance. J Plant Physiol 168:1271-1279
56. Hahn M, Walbot V (1989) Effects of cold-treatment on protein synthesis and mRNA levels in rice leaves. Plant Physiol 91:930-938
57. Dorrestein PC, Huili ZH, Taylor SV, McLafferty FW, Begley TP (2004) The biosynthesis of the thiazole phosphate moiety of thiamin (vitamin B1): the early steps catalyzed by thiazole synthase. J Am Chem Soc 126:3091-3096 (Pubitemid 38386621)
58. Hohmann S, Meacock PA (1998) Thiamin metabolism and thiamin diphosphate-dependent enzymes in the yeast Saccharomyces cerevisiae: genetic regulation. Biochimica et Biophysica Acta (BBA) 1385:201-219 (Pubitemid 28310789)
59. Tunc-Ozdemir M, Miller G, Song L, Kim J, Sodek A, Koussevitzky S, Misra AN, Mittler R, Shintani D (2009) Thiamin confers enhanced tolerance to oxidative stress in arabidopsis. Plant Physiol 151:421-432
60. Sayed SA, Gadallah MAA (2002) Effects of shoot and root application of thiamin on salt-stressed sunflower plants. Plant Growth Regul 36:71-80 (Pubitemid 34294358)
61. Ribeiro DT, Farias LP, de Almeida JD, Kashiwabara PM, Ribeiro AFC, Silva-Filho MC, Menck CFM, Van Sluys M-A (2005) Functional characterization of the THI1 promoter region from Arabidopsis thaliana. J Exp Bot 56:1797-1804 (Pubitemid 40907143)
62. Vítámvás P, Saalbach G, Prášil IT, Čapková V, Opatrná J, Ahmed J (2007) WCS120 protein family and proteins soluble upon boiling in cold-acclimated winter wheat. J Plant Physiol 164:1197-1207 (Pubitemid 47243685)