Cold acclimation proteome analysis reveals close link between the up-regulation of low-temperature associated proteins and vernalization fulfillment

Journal of Proteome Research

Volumn 9, Issue 11, 2010, Pages 5658-5667

  Sarhadi, Elham ^a,b,c   Mahfoozi, Siroos ^c   Hosseini, Seyed Abdollah ^a   Salekdeh, Ghasem Hosseini ^a,d  

^a AGRICULTURAL BIOTECHNOLOGY RESEARCH INSTITUTE OF IRAN   (Iran)

^b ISLAMIC AZAD UNIVERSITY   (Iran)

^c SEED AND PLANT IMPROVEMENT INSTITUTE   (Iran)

^d ROYAN INSTITUTE FOR REPRODUCTIVE BIOMEDICINE   (Iran)

Author keywords

low temperature; proteomic; Triticum aestivum; vernalization; wheat

Indexed keywords

ARTICLE; CHLOROPLAST; COLD ACCLIMATIZATION; CULTIVAR; GENOTYPE; LOW TEMPERATURE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; OXIDATIVE STRESS; PHOTOSYNTHESIS; PLANT LEAF; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN METABOLISM; PROTEIN SYNTHESIS; PROTEOMICS; TEMPERATURE ACCLIMATIZATION; TRANSCRIPTION REGULATION; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION; VERNALIZATION; WHEAT;

ACCLIMATIZATION; COLD TEMPERATURE; GENE EXPRESSION REGULATION, PLANT; PLANT PROTEINS; PROTEOMICS; TRITICUM; UP-REGULATION;

TRITICUM AESTIVUM;

EID: 78149368883     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr100475r     Document Type: Article

References (59)

1. Mahfoozi, S.; Limin, A. E.; Ahakpaz, F.; Fowler, D. B. Phenological development and expression of freezing resistance in spring and winter wheat under field conditions in north-west Iran Field Crops Res. 2006, 97 (2-3) 182-187
2. Fowler, D. B.; Limin, A. E.; Wang, S.; Ward, R. W. Relationship between low-temperature tolerance and vernalization response in wheat and rye Can. J. Plant Sci. 1996, 76, 37-42
3. Mahfoozi, S.; Limin, A. E.; Fowler, D. B. Developmental regulation of low-temperature tolerance in winter wheat Ann. Bot. 2001, 87 (6) 751-757
4. Thomashow, M. F. Plant cold acclimation: freezing tolerance genes and regulatory mechanisms Annu. Rev. Plant Biol. 1999, 50 (1) 571-599
5. Sarhan, F.; Ouellet, F.; Vazquez-Tello, A. The wheat wcs120 gene family. A useful model to understand the molecular genetics of freezing tolerance in cereals Physiol. Plant. 2006, 101 (2) 439-445
6. Danyluk, J.; Kane, N. A.; Breton, G.; Limin, A. E.; Fowler, D. B.; Sarhan, F. TaVRT-1, a putative transcription factor associated with vegetative to reproductive transition in cereals Plant Physiol. 2003, 132 (4) 1849-1860
7. Monroy, A. F.; Dryanova, A.; Malette, B.; Oren, D. H.; Ridha Farajalla, M.; Liu, W.; Danyluk, J.; Ubayasena, L. W. C.; Kane, K.; Scoles, G. J. Regulatory gene candidates and gene expression analysis of cold acclimation in winter and spring wheat Plant Mol. Biol. 2007, 64 (4) 409-423
8. Salekdeh, G. H.; Komatsu, S. Crop proteomics: aim at sustainable agriculture of tomorrow Proteomics 2007, 7 (16) 2976-2996
9. Cui, S.; Huang, F.; Wang, J.; Ma, X.; Cheng, Y.; Liu, J. A proteomic analysis of cold stress responses in rice seedlings Proteomics 2005, 5 (12) 3162-3172
10. Yan, S. P.; Zhang, Q. Y.; Tang, Z. C.; Su, W. A.; Sun, W. N. Comparative proteomic analysis provides new insights into chilling stress responses in rice Mol. Cell. Proteomics 2006, 5 (3) 484-496
11. Imin, N.; Kerim, T.; Rolfe, B. G.; Weinman, J. J. Effect of early cold stress on the maturation of rice anthers Proteomics 2004, 4 (7) 1873-1882
12. Imin, N.; Kerim, T.; Weinman, J. J.; Rolfe, B. G. Low temperature treatment at the young microspore stage induces protein changes in rice anthers Mol. Cell. Proteomics 2006, 5 (2) 274-292
13. Bae, M. S.; Cho, E. J.; Choi, E. Y.; Park, O. K. Analysis of the Arabidopsis nuclear proteome and its response to cold stress Plant J. 2003, 36 (5) 652-663
14. Limin, A. E.; Fowler, D. B. Cold hardiness expression in interspecific hybrids and amphiploids of the Triticeae Genome 1988, 30, 361-365
15. Hay, R. K. M.; Ellis, R. P. The control of flowering in wheat and barley: what recent advances in molecular genetics can reveal Ann. Bot. 1998, 82 (5) 541-554
16. Mahfoozi, S.; Limin, A. E.; Fowler, D. B. Influence of vernalization and photoperiod responses on cold hardiness in winter cereals Crop Sci. 2001, 41 (4) 1006-1011
17. Dooki, A. D.; Mayer-Posner, F. J.; Askari, H.; Zaiee, A. A.; Salekdeh, G. H. Proteomic responses of rice young panicles to salinity Proteomics 2006, 6 (24) 6498-6507
18. Hajheidari, M.; Eivazi, A.; Buchanan, B. B.; Wong, J. H.; Majidi, I.; Salekdeh, G. H. Proteomics uncovers a role for redox in drought tolerance in wheat J. Proteome Res. 2007, 6 (4) 1451-1460
19. Blum, H.; Beier, H.; Gross, H. J. Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels Electrophoresis 1987, 8 (2) 93-99
20. Neuhoff, V.; Arnold, N.; Taube, D.; Ehrhardt, W. Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250 Electrophoresis 1988, 9 (6) 255-262
21. Fowler, D. B.; Limin, A. E. Interactions among factors regulating phenological development and acclimation rate determine low-temperature tolerance in wheat Ann. Bot. 2004, 94 (5) 717-724
22. Wang, S. Y.; Ward, R. W.; Ritchie, J. T.; Fischer, R. A.; Schulthess, U.; Vernalization in wheat, I. A model based on the interchangeability of plant age and vernalization duration Field Crops Res. 1995, 41 (2) 91-100
23. Fowler, D. B.; Chauvin, L. P.; Limin, A. E.; Sarhan, F. The regulatory role of vernalization in the expression of low-temperature-induced genes in wheat and rye Theor. Appl. Genet. 1996, 93 (4) 554-559
24. Delecolle, R.; Hay, R. K. M.; Guerif, M.; Pluchard, P.; Varlet-Grancher, C. A method of describing the progress of apical development in wheat, based on the time-course of organogenesis Field Crops Res. 1989, 21, 147-160
25. Roberts, D. W. A. Identification of loci on chromosome 5A of wheat involved in control of cold hardiness, vernalization, leaf length, rosette growth habit, and height of hardened plants Genome 1990, 33 (2) 247-259
26. Dhillon, T.; Pearce, S. P.; Stockinger, E. J.; Distelfeld, A.; Li, C.; Knox, A. K.; Vashegyi, I.; Vagujfalvi, A.; Galiba, G.; Dubcovsky, J. Regulation of Freezing Tolerance and Flowering in Temperate Cereals: The VRN-1 Connection Plant Physiol. 2010, 153 (4) 1846-1858
27. Limin, A. E.; Fowler, D. B. Low-temperature tolerance and genetic potential in wheat (Triticum aestivum L.): response to photoperiod, vernalization, and plant development Planta 2006, 224 (2) 360-366
28. Kane, N. A.; Danyluk, J.; Tardif, G.; Ouellet, F.; Laliberte, J. F.; Limin, A. E.; Fowler, D. B.; Sarhan, F. TaVRT-2, a member of the StMADS-11 clade of flowering repressors, is regulated by vernalization and photoperiod in wheat Plant Physiol. 2005, 138 (4) 2354-2363
29. Sakai, A.; Larcher, W. Frost survival of plants: responses and adaptation to freezing stress; Springer-Verlag: New York, 1987.
30. Hughes, M. A.; Dunn, M. A. The molecular biology of plant acclimation to low temperature J. Exp. Bot. 1996, 47 (3) 291-305
31. Vagujfalvi, A.; Galiba, G.; Dubcovsky, J.; Cattivelli, L. Two loci on wheat chromosome 5A regulate the differential cold-dependent expression of the cor14b gene in frost-tolerant and frost-sensitive genotypes Mol. Gen. Genetics 2000, 263 (2) 194-200
32. Ohno, R.; Takumi, S.; Nakamura, C. Expression of a cold-responsive Lt-Cor gene and development of freezing tolerance during cold acclimation in wheat (Triticum aestivum L.) J. Exp. Bot. 2001, 52 (365) 2367-2374
33. Zhu, J. K. Cell signaling under salt, water and cold stresses Curr. Opin. Plant Biol. 2001, 4 (5) 401-406
34. Ndong, C.; Danyluk, J.; Wilson, K. E.; Pocock, T.; Huner, N.; Sarhan, F. Cold-regulated cereal chloroplast late embryogenesis abundant-like proteins. Molecular characterization and functional analyses Plant Physiol. 2002, 129 (3) 1368-1381
35. Crosatti, C.; Soncini, C.; Stanca, A. M.; Cattivelli, L. The accumulation of a cold-regulated chloroplastic protein is light-dependent Planta 1995, 196 (3) 458-463
36. Takumi, S.; Koike, A.; Nakata, M.; Kume, S.; Ohno, R.; Nakamura, C. Cold-specific and light-stimulated expression of a wheat (Triticum aestivum L.) Cor gene Wcor15 encoding a chloroplast-targeted protein J. Exp. Bot. 2003, 54 (391) 2265-2274
37. Chinnusamy, V.; Zhu, J.; Zhu, J. K. Cold stress regulation of gene expression in plants Trends Plant Sci. 2007, 12 (10) 444-451
38. Takumi, S.; Shimamura, C.; Kobayashi, F. Increased freezing tolerance through up-regulation of downstream genes via the wheat CBF gene in transgenic tobacco Plant Physiol. Biochem. 2008, 46 (2) 205-211
39. Stockinger, E. J.; Skinner, J. S.; Gardner, K. G.; Francia, E.; Pecchioni, N. Expression levels of barley Cbf genes at the Frost resistance-H2 locus are dependent upon alleles at Fr-H1 and Fr-H2 Plant J. 2007, 51 (2) 308-321
40. Griffith, M.; Yaish, M. W. F. Antifreeze proteins in overwintering plants: a tale of two activities Trends Plant Sci. 2004, 9 (8) 399-405
41. Yaish, M. W. F.; Doxey, A. C.; McConkey, B. J.; Moffatt, B. A.; Griffith, M. Cold-active winter rye glucanases with ice-binding capacity Plant Physiol. 2006, 141 (4) 1459-1472
42. Torabi, S.; Wissuwa, M.; Heidari, M.; Naghavi, M. R.; Gilany, K.; Hajirezaei, M. R.; Omidi, M.; Yazdi-Samadi, B.; Ismail, A. M.; Salekdeh, G. H. A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency Proteomics 2009, 9 (1) 159-170
43. Yeh, S.; Moffatt, B. A.; Griffith, M.; Xiong, F.; Yang, D. S. C.; Wiseman, S. B.; Sarhan, F.; Danyluk, J.; Xue, Y. Q.; Hew, C. L. Chitinase genes responsive to cold encode antifreeze proteins in winter cereals Plant Physiol. 2000, 124 (3) 1251
44. Abbasi, F. M.; Komatsu, S. A proteomic approach to analyze salt-responsive proteins in rice leaf sheath Proteomics 2004, 4 (7) 2072-2081
45. Parker, R.; Flowers, T. J.; Moore, A. L.; Harpham, N. V. An accurate and reproducible method for proteome profiling of the effects of salt stress in the rice leaf lamina J. Exp. Bot. 2006, 57 (5) 1109-1118
46. Gazanchian, A.; Hajheidari, M.; Sima, N. K.; Salekdeh, G. H. Proteome response of Elymus elongatum to severe water stress and recovery J. Exp. Bot. 2007, 58 (2) 291-300
47. Dietz, K. J.; Horling, F.; Konig, J.; Baier, M. The function of the chloroplast 2-cysteine peroxiredoxin in peroxide detoxification and its regulation J. Exp. Bot. 2002, 53 (372) 1321-1329
48. Dietz, K. J. Plant peroxiredoxins Annu. Rev. Plant Biol. 2003, 54 (1) 93-107
49. Hajheidari, M.; Abdollahian-Noghabi, M.; Askari, H.; Heidari, M.; Sadeghian, S. Y.; Ober, E. S.; Salekdeh, G. H. Proteome analysis of sugar beet leaves under drought stress Proteomics 2005, 5 (4) 950-960
50. Ali, G. M.; Komatsu, S. Proteomic analysis of rice leaf sheath during drought stress J. Proteome Res. 2006, 5 (2) 396-403
51. Salekdeh, G. H.; Siopongco, J.; Wade, L. J.; Ghareyazie, B.; Bennett, J. Proteomic analysis of rice leaves during drought stress and recovery Proteomics 2002, 2 (9) 1131-1145
52. Choi, G.; Yi, H.; Lee, J.; Kwon, Y. K.; Soh, M. S.; Shin, B.; Luka, Z.; Hahn, T. R.; Song, P. S. Phytochrome signalling is mediated through nucleoside diphosphate kinase 2 Nature 1999, 401 (6753) 610-613
53. Moon, H.; Lee, B.; Choi, G.; Shin, D.; Prasad, D. T.; Lee, O.; Kwak, S. S.; Kim, D. H.; Nam, J.; Bahk, J. NDP kinase 2 interacts with two oxidative stress-activated MAPKs to regulate cellular redox state and enhances multiple stress tolerance in transgenic plants Proc. Natl. Acad. Sci. 2003, 100 (1) 358-363
54. Edwards, R.; Dixon, D. P.; Walbot, V. Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health Trends Plant Sci. 2000, 5 (5) 193-198
55. Taylor, C. B.; Bariola, P. A.; DelCardayre, S. B.; Raines, R. T.; Green, P. J. RNS2: a senescence-associated RNase of Arabidopsis that diverged from the S-RNases before speciation Proc. Natl. Acad. Sci. 1993, 90 (11) 5118-5122
56. Sauter, M.; Rzewuski, G.; Marwedel, T.; Lorbiecke, R. The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins J. Exp. Bot. 2002, 53 (379) 2325-2331
57. Lee, B. H.; Lee, H.; Xiong, L.; Zhu, J. K. A mitochondrial complex I defect impairs cold-regulated nuclear gene expression Plant Cell 2002, 14 (6) 1235-1251
58. Nakamura, T.; Ohta, M.; Sugiura, M.; Sugita, M. Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma J. Biol. Chem. 2001, 276 (1) 147-152
59. Nohzadeh Malakshah, S.; Habibi Rezaei, M.; Heidari, M.; Salekdeh, G. H. Proteomics reveals new salt responsive proteins associated with rice plasma membrane Biosci. Biotechnol. Biochem. 2007, 71 (9) 2144-2154