메뉴 건너뛰기




Volumn 22, Issue 7, 2014, Pages 930-937

Distribution of ancestral chromosomal segments in admixed genomes and its implications for inferring population history and admixture mapping

Author keywords

Admixed population; Admixture mapping; Ancestral chromosomal segment; Gradual admixture (GA) model; Hybrid isolation (HI) model; Theoretical admixture model

Indexed keywords

ADMIXTURE MAPPING; AFRICAN AMERICAN; ALLELE; ARTICLE; CONCEPTUAL FRAMEWORK; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENOME ANALYSIS; HISPANIC; HUMAN; HUMAN CHROMOSOME; HUMAN GENOME; LENGTH OF ANCESTRAL CHROMOSOMAL SEGMENT; POPULATION GENETICS; POPULATION MODEL; PRIORITY JOURNAL; SIMULATION; THEORETICAL MODEL; BIOLOGICAL MODEL; CHROMOSOME MAP; FEMALE; GENETICS; MALE;

EID: 84902330543     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2013.265     Document Type: Article
Times cited : (20)

References (40)
  • 1
    • 84868470761 scopus 로고    scopus 로고
    • Exploring population admixture dynamics via empirical and simulated genome-wide distribution of ancestral chromosomal segments
    • Jin W, Wang S, Wang H, Jin L, Xu S: Exploring population admixture dynamics via empirical and simulated genome-wide distribution of ancestral chromosomal segments. Am J Hum Genet 2012; 91: 849-862
    • (2012) Am J Hum Genet , vol.91 , pp. 849-862
    • Jin, W.1    Wang, S.2    Wang, H.3    Jin, L.4    Xu, S.5
  • 2
    • 79960566302 scopus 로고    scopus 로고
    • New approaches to disease mapping in admixed populations
    • Seldin MF, Pasaniuc B, Price AL: New approaches to disease mapping in admixed populations. Nat Rev Genet 2011; 12: 523-528
    • (2011) Nat Rev Genet , vol.12 , pp. 523-528
    • Seldin, M.F.1    Pasaniuc, B.2    Price, A.L.3
  • 3
    • 83455198491 scopus 로고    scopus 로고
    • A general mechanistic model for admixture histories of hybrid populations
    • Verdu P, Rosenberg NA: A general mechanistic model for admixture histories of hybrid populations. Genetics 2011; 189: 1413-1426
    • (2011) Genetics , vol.189 , pp. 1413-1426
    • Verdu, P.1    Rosenberg, N.A.2
  • 4
    • 62449182499 scopus 로고    scopus 로고
    • Inference of historical changes in migration rate from the lengths of migrant tracts
    • Pool JE, Nielsen R: Inference of historical changes in migration rate from the lengths of migrant tracts. Genetics 2009; 181: 711-719
    • (2009) Genetics , vol.181 , pp. 711-719
    • Pool, J.E.1    Nielsen, R.2
  • 5
    • 84862587557 scopus 로고    scopus 로고
    • Population genetics models of local ancestry
    • Gravel S: Population genetics models of local ancestry. Genetics 2012; 191: 607-619
    • (2012) Genetics , vol.191 , pp. 607-619
    • Gravel, S.1
  • 6
  • 7
    • 84872074517 scopus 로고    scopus 로고
    • PCAdmix: Principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations
    • Brisbin A, Bryc K, Byrnes J et al: PCAdmix: Principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations. Hum Biol 2012; 84: 343-364
    • (2012) Hum Biol , vol.84 , pp. 343-364
    • Brisbin, A.1    Bryc, K.2    Byrnes, J.3
  • 8
    • 84857477622 scopus 로고    scopus 로고
    • Inference of population structure using dense haplotype data
    • Lawson DJ, Hellenthal G, Myers S, Falush D: Inference of population structure using dense haplotype data. PLoS Genet 2012; 8: E1002453
    • (2012) PLoS Genet , vol.8
    • Lawson, D.J.1    Hellenthal, G.2    Myers, S.3    Falush, D.4
  • 10
    • 67651225410 scopus 로고    scopus 로고
    • Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
    • Price AL, Tandon A, Patterson N et al: Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet 2009; 5: E1000519
    • (2009) PLoS Genet , vol.5
    • Price, A.L.1    Tandon, A.2    Patterson, N.3
  • 11
    • 41649121004 scopus 로고    scopus 로고
    • On the inference of ancestries in admixed populations
    • DOI 10.1101/gr.072751.107
    • Sankararaman S, Kimmel G, Halperin E, Jordan MI: On the inference of ancestries in admixed populations. Genome Res 2008; 18: 668-675. (Pubitemid 351482792
    • (2008) Genome Research , vol.18 , Issue.4 , pp. 668-675
    • Sankararaman, S.1    Kimmel, G.2    Halperin, E.3    Jordan, M.I.4
  • 12
    • 76249114566 scopus 로고    scopus 로고
    • Characterizing the admixed African ancestry of African Americans
    • Zakharia F, Basu A, Absher D et al: Characterizing the admixed African ancestry of African Americans. Genome Biol 2009; 10: R141
    • (2009) Genome Biol , vol.10
    • Zakharia, F.1    Basu, A.2    Absher, D.3
  • 13
    • 84867241644 scopus 로고    scopus 로고
    • Population genetic inference from personal genome data: Impact of ancestry and admixture on human genomic variation
    • Kidd JM, Gravel S, Byrnes J et al: Population genetic inference from personal genome data: Impact of ancestry and admixture on human genomic variation. Am J Hum Genet 2012; 91: 660-671
    • (2012) Am J Hum Genet , vol.91 , pp. 660-671
    • Kidd, J.M.1    Gravel, S.2    Byrnes, J.3
  • 15
    • 0031037972 scopus 로고    scopus 로고
    • Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations
    • McKeigue PM: Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations. Am J Hum Genet 1997; 60: 188-196
    • (1997) Am J Hum Genet , vol.60 , pp. 188-196
    • McKeigue, P.M.1
  • 16
    • 0032231748 scopus 로고    scopus 로고
    • Mapping genes that underlie ethnic differences in disease risk: Methods for detecting linkage in admixed populations, by conditioning on parental admixture
    • McKeigue PM: Mapping genes that underlie ethnic differences in disease risk: Methods for detecting linkage in admixed populations, by conditioning on parental admixture. Am J Hum Genet 1998; 63: 241-251
    • (1998) Am J Hum Genet , vol.63 , pp. 241-251
    • McKeigue, P.M.1
  • 17
    • 6344244729 scopus 로고    scopus 로고
    • Statistical tests for admixture mapping with case-control and cases-only data
    • DOI 10.1086/425281
    • Montana G, Pritchard JK: Statistical tests for admixture mapping with case-control and cases-only data. Am J Hum Genet 2004; 75: 771-789. (Pubitemid 39390486
    • (2004) American Journal of Human Genetics , vol.75 , Issue.5 , pp. 771-789
    • Montana, G.1    Pritchard, J.K.2
  • 19
    • 3042616060 scopus 로고    scopus 로고
    • Putative ancestral origins of chromosomal segments in individual African Americans: Implications for admixture mapping
    • DOI 10.1101/gr.2165904
    • Seldin MF, Morii T, Collins-Schramm HE et al: Putative ancestral origins of chromosomal segments in individual African Americans: Implications for admixture mapping. Genome Res 2004; 14: 1076-1084. (Pubitemid 38811544
    • (2004) Genome Research , vol.14 , Issue.6 , pp. 1076-1084
    • Seldin, M.F.1    Morii, T.2    Collins-Schramm, H.E.3    Chima, B.4    Kittles, R.5    Criswell, L.A.6    Li, H.7
  • 22
    • 0026030165 scopus 로고
    • The genetic structure of admixed populations
    • Long JC: The genetic structure of admixed populations. Genetics 1991; 127: 417-428
    • (1991) Genetics , vol.127 , pp. 417-428
    • Long, J.C.1
  • 23
    • 0029075560 scopus 로고
    • The transmission/disequilibrium test: History, subdivision, and admixture
    • Ewens WJ, Spielman RS: The transmission/disequilibrium test: History, subdivision, and admixture. Am J Hum Genet 1995; 57: 455-464
    • (1995) Am J Hum Genet , vol.57 , pp. 455-464
    • Ewens, W.J.1    Spielman, R.S.2
  • 24
    • 31344452930 scopus 로고    scopus 로고
    • The admixture linkage disequilibrium and genetic linkage inference on the gradual admixture population
    • DOI 10.1016/S0379-4172(06)60002-4
    • Guo W, Fung WK: The admixture linkage disequilibrium and genetic linkage inference on the gradual admixture population. Yi Chuan Xue Bao 2006; 33: 12-18. (Pubitemid 43139343
    • (2006) Acta Genetica Sinica , vol.33 , Issue.1 , pp. 12-18
    • Guo, W.1    Fung, W.-K.2
  • 25
    • 84863265109 scopus 로고    scopus 로고
    • Genome-wide detection of natural selection in African Americans pre-And post-Admixture
    • Jin W, Xu S, Wang H et al: Genome-wide detection of natural selection in African Americans pre-And post-Admixture. Genome Res 2012; 22: 519-527
    • (2012) Genome Res , vol.22 , pp. 519-527
    • Jin, W.1    Xu, S.2    Wang, H.3
  • 26
    • 34247990255 scopus 로고
    • On Kolmogorov-Smirnov test for normality with mean and variance unknown
    • Lilliefo HW: On Kolmogorov-Smirnov test for normality with mean and variance unknown. J Am Stat Assoc 1967; 62: 399-402
    • (1967) J Am Stat Assoc , vol.62 , pp. 399-402
    • Lilliefo, H.W.1
  • 27
    • 13944250687 scopus 로고    scopus 로고
    • Admixture mapping for hypertension loci with genomescan markers
    • Zhu X, Luke A, Cooper RS et al: Admixture mapping for hypertension loci with genomescan markers. Nat Genet 2005; 37: 177-181
    • (2005) Nat Genet , vol.37 , pp. 177-181
    • Zhu, X.1    Luke, A.2    Cooper, R.S.3
  • 30
    • 33749034726 scopus 로고    scopus 로고
    • A genomewide single-nucleotide-polymorphism panel with high ancestry information for African American admixture mapping
    • DOI 10.1086/507954
    • Tian C, Hinds DA, Shigeta R, Kittles R, Ballinger DG, Seldin MF: A genomewide singlenucleotide-polymorphism panel with high ancestry information for African American admixture mapping. Am J Hum Genet 2006; 79: 640-649. (Pubitemid 44452741
    • (2006) American Journal of Human Genetics , vol.79 , Issue.4 , pp. 640-649
    • Tian, C.1    Hinds, D.A.2    Shigeta, R.3    Kittles, R.4    Ballinger, D.G.5    Seldin, M.F.6
  • 31
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK: Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 2003; 164: 1567-1587. (Pubitemid 37102217
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 32
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P: Inference of population structure using multilocus genotype data. Genetics 2000; 155: 945-959. (Pubitemid 30397141
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 34
    • 79955576507 scopus 로고    scopus 로고
    • The history of african gene flow into southern europeans, levantines, and jews
    • Moorjani P, Patterson N, Hirschhorn JN et al: The history of African gene flow into Southern Europeans, Levantines, and Jews. PLoS Genet 2011; 7: E1001373
    • (2011) PLoS Genet , vol.7
    • Moorjani, P.1    Patterson, N.2    Hirschhorn, J.N.3
  • 38
    • 41949133594 scopus 로고    scopus 로고
    • Geographic patterns of genome admixture in Latin American Mestizos
    • Wang S, Ray N, Rojas W et al: Geographic patterns of genome admixture in Latin American Mestizos. PLoS Genet 2008; 4: E1000037
    • (2008) PLoS Genet , vol.4
    • Wang, S.1    Ray, N.2    Rojas, W.3
  • 40
    • 84855288572 scopus 로고    scopus 로고
    • Ancestral components of admixed genomes in a Mexican cohort
    • Johnson NA, Coram MA, Shriver MD et al: Ancestral components of admixed genomes in a Mexican cohort. PLoS Genet 2011; 7: E1002410.
    • (2011) PLoS Genet , vol.7
    • Johnson, N.A.1    Coram, M.A.2    Shriver, M.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.