-
1
-
-
33646585744
-
Detecting sexual conflict and sexually antagonistic coevolution
-
Rowe L, Day T. Detecting sexual conflict and sexually antagonistic coevolution. Philos Trans R Soc Lond Ser B Biol Sci 2006, 361(1466):277-285.
-
(2006)
Philos Trans R Soc Lond Ser B Biol Sci
, vol.361
, Issue.1466
, pp. 277-285
-
-
Rowe, L.1
Day, T.2
-
2
-
-
0018954214
-
Sexual dimorphism, sexual selection, and adaptation in polygenic characters
-
Lande R. Sexual dimorphism, sexual selection, and adaptation in polygenic characters. Evolution; Int J of organic evolution 1980, 34(2):292-305.
-
(1980)
Evolution; Int J of organic evolution
, vol.34
, Issue.2
, pp. 292-305
-
-
Lande, R.1
-
3
-
-
0024885152
-
The evolution of sexual dimorphism in animals: hypotheses and tests
-
10.1016/0169-5347(89)90212-7, 21227335
-
Hedrick AV, Temeles EJ. The evolution of sexual dimorphism in animals: hypotheses and tests. Trends Ecol Evol 1989, 4(5):136-138. 10.1016/0169-5347(89)90212-7, 21227335.
-
(1989)
Trends Ecol Evol
, vol.4
, Issue.5
, pp. 136-138
-
-
Hedrick, A.V.1
Temeles, E.J.2
-
4
-
-
0021554565
-
Sex chromosomes and the evolution of sexual dimorphism
-
Rice WR. Sex chromosomes and the evolution of sexual dimorphism. Evolution; Int J Organic Evolution 1984, 38(4):735-742.
-
(1984)
Evolution; Int J Organic Evolution
, vol.38
, Issue.4
, pp. 735-742
-
-
Rice, W.R.1
-
5
-
-
0034111487
-
Sex-limited mutations and the evolution of sexual dimorphism
-
Rhen T. Sex-limited mutations and the evolution of sexual dimorphism. Evolution; Int J Organic Evolution 2000, 54(1):37-43.
-
(2000)
Evolution; Int J Organic Evolution
, vol.54
, Issue.1
, pp. 37-43
-
-
Rhen, T.1
-
6
-
-
61849152920
-
Sex chromosomes and the evolution of sexual dimorphism: lessons from the genome
-
10.1086/595754, 20374139
-
Mank JE. Sex chromosomes and the evolution of sexual dimorphism: lessons from the genome. Am Nat 2009, 173(2):141-150. 10.1086/595754, 20374139.
-
(2009)
Am Nat
, vol.173
, Issue.2
, pp. 141-150
-
-
Mank, J.E.1
-
7
-
-
78650000026
-
Sex linkage, sex-specific selection, and the role of recombination in the evolution of sexually dimorphic gene expression
-
Connallon T, Clark AG. Sex linkage, sex-specific selection, and the role of recombination in the evolution of sexually dimorphic gene expression. Evolution; Int J Organic Evolution 2010, 64(12):3417-3442.
-
(2010)
Evolution; Int J Organic Evolution
, vol.64
, Issue.12
, pp. 3417-3442
-
-
Connallon, T.1
Clark, A.G.2
-
8
-
-
34548013932
-
The evolution of sex-biased genes and sex-biased gene expression
-
10.1038/nrg2167, 17680007
-
Ellegren H, Parsch J. The evolution of sex-biased genes and sex-biased gene expression. Nat Rev Genet 2007, 8(9):689-698. 10.1038/nrg2167, 17680007.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.9
, pp. 689-698
-
-
Ellegren, H.1
Parsch, J.2
-
9
-
-
33746681910
-
Tissue-specific expression and regulation of sexually dimorphic genes in mice
-
10.1101/gr.5217506, 1524872, 16825664
-
Yang X, Schadt EE, Wang S, Wang H, Arnold AP, Ingram-Drake L, Drake TA, Lusis AJ. Tissue-specific expression and regulation of sexually dimorphic genes in mice. Genome Res 2006, 16(8):995-1004. 10.1101/gr.5217506, 1524872, 16825664.
-
(2006)
Genome Res
, vol.16
, Issue.8
, pp. 995-1004
-
-
Yang, X.1
Schadt, E.E.2
Wang, S.3
Wang, H.4
Arnold, A.P.5
Ingram-Drake, L.6
Drake, T.A.7
Lusis, A.J.8
-
10
-
-
73449100132
-
A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: evidence for masculinization of the transcriptome
-
10.1186/1471-2164-10-579, 2797025, 19958554
-
Small CM, Carney GE, Mo Q, Vannucci M, Jones AG. A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: evidence for masculinization of the transcriptome. BMC Genomics 2009, 10:579. 10.1186/1471-2164-10-579, 2797025, 19958554.
-
(2009)
BMC Genomics
, vol.10
, pp. 579
-
-
Small, C.M.1
Carney, G.E.2
Mo, Q.3
Vannucci, M.4
Jones, A.G.5
-
11
-
-
42149106152
-
The unique genomic properties of sex-biased genes: insights from avian microarray data
-
10.1186/1471-2164-9-148, 2294128, 18377635
-
Mank JE, Hultin-Rosenberg L, Webster MT, Ellegren H. The unique genomic properties of sex-biased genes: insights from avian microarray data. BMC Genomics 2008, 9:148. 10.1186/1471-2164-9-148, 2294128, 18377635.
-
(2008)
BMC Genomics
, vol.9
, pp. 148
-
-
Mank, J.E.1
Hultin-Rosenberg, L.2
Webster, M.T.3
Ellegren, H.4
-
12
-
-
84884653636
-
Masculinization of gene expression is associated with exaggeration of male sexual dimorphism
-
10.1371/journal.pgen.1003697, 3744414, 23966876
-
Pointer MA, Harrison PW, Wright AE, Mank JE. Masculinization of gene expression is associated with exaggeration of male sexual dimorphism. PLoS Genet 2013, 9(8):e1003697. 10.1371/journal.pgen.1003697, 3744414, 23966876.
-
(2013)
PLoS Genet
, vol.9
, Issue.8
-
-
Pointer, M.A.1
Harrison, P.W.2
Wright, A.E.3
Mank, J.E.4
-
13
-
-
4844222675
-
A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
-
10.1186/gb-2004-5-6-r40, 463073, 15186491
-
Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, Lu J, Doctolero M, Vainer M, Chan C, Malley J, Eastman S, Oliver B. A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. Genome Biol 2004, 5(6):R40. 10.1186/gb-2004-5-6-r40, 463073, 15186491.
-
(2004)
Genome Biol
, vol.5
, Issue.6
-
-
Parisi, M.1
Nuttall, R.2
Edwards, P.3
Minor, J.4
Naiman, D.5
Lu, J.6
Doctolero, M.7
Vainer, M.8
Chan, C.9
Malley, J.10
Eastman, S.11
Oliver, B.12
-
14
-
-
39649103085
-
Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori
-
10.1186/gb-2007-8-8-r162, 2374993, 17683582
-
Xia Q, Cheng D, Duan J, Wang G, Cheng T, Zha X, Liu C, Zhao P, Dai F, Zhang Z. Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori. Genome Biol 2007, 8(8):R162. 10.1186/gb-2007-8-8-r162, 2374993, 17683582.
-
(2007)
Genome Biol
, vol.8
, Issue.8
-
-
Xia, Q.1
Cheng, D.2
Duan, J.3
Wang, G.4
Cheng, T.5
Zha, X.6
Liu, C.7
Zhao, P.8
Dai, F.9
Zhang, Z.10
-
15
-
-
84872546066
-
The evolutionary causes and consequences of sex-biased gene expression
-
Parsch J, Ellegren H. The evolutionary causes and consequences of sex-biased gene expression. Nat Rev Genet 2013, 14(2):83-87.
-
(2013)
Nat Rev Genet
, vol.14
, Issue.2
, pp. 83-87
-
-
Parsch, J.1
Ellegren, H.2
-
16
-
-
37249039910
-
Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila
-
10.1534/genetics.107.078865, 2147986, 18039869
-
Haerty W, Jagadeeshan S, Kulathinal RJ, Wong A, Ravi Ram K, Sirot LK, Levesque L, Artieri CG, Wolfner MF, Civetta A, Singh RS. Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila. Genetics 2007, 177(3):1321-1335. 10.1534/genetics.107.078865, 2147986, 18039869.
-
(2007)
Genetics
, vol.177
, Issue.3
, pp. 1321-1335
-
-
Haerty, W.1
Jagadeeshan, S.2
Kulathinal, R.J.3
Wong, A.4
Ravi Ram, K.5
Sirot, L.K.6
Levesque, L.7
Artieri, C.G.8
Wolfner, M.F.9
Civetta, A.10
Singh, R.S.11
-
17
-
-
33750452661
-
Widespread adaptive evolution of Drosophila genes with sex-biased expression
-
10.1534/genetics.106.058008, 1602082, 16951084
-
Proschel M, Zhang Z, Parsch J. Widespread adaptive evolution of Drosophila genes with sex-biased expression. Genetics 2006, 174(2):893-900. 10.1534/genetics.106.058008, 1602082, 16951084.
-
(2006)
Genetics
, vol.174
, Issue.2
, pp. 893-900
-
-
Proschel, M.1
Zhang, Z.2
Parsch, J.3
-
18
-
-
79957479702
-
Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution
-
10.1093/molbev/msr010, 3098513, 21239389
-
Meisel RP. Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution. Mol Biol Evol 2011, 28(6):1893-1900. 10.1093/molbev/msr010, 3098513, 21239389.
-
(2011)
Mol Biol Evol
, vol.28
, Issue.6
, pp. 1893-1900
-
-
Meisel, R.P.1
-
19
-
-
84872519386
-
Sex-biased transcriptome evolution in Drosophila
-
Assis R, Zhou Q, Bachtrog D. Sex-biased transcriptome evolution in Drosophila. Genome Biol Evolution 2012, 4(11):1189-1200.
-
(2012)
Genome Biol Evolution
, vol.4
, Issue.11
, pp. 1189-1200
-
-
Assis, R.1
Zhou, Q.2
Bachtrog, D.3
-
20
-
-
83055187864
-
Emergence of male-biased genes on the chicken Z-chromosome: sex-chromosome contrasts between male and female heterogametic systems
-
10.1101/gr.119065.110, 3227098, 21868722
-
Ellegren H. Emergence of male-biased genes on the chicken Z-chromosome: sex-chromosome contrasts between male and female heterogametic systems. Genome Res 2011, 21(12):2082-2086. 10.1101/gr.119065.110, 3227098, 21868722.
-
(2011)
Genome Res
, vol.21
, Issue.12
, pp. 2082-2086
-
-
Ellegren, H.1
-
21
-
-
84863550891
-
Disentangling the relationship between sex-biased gene expression and X-linkage
-
10.1101/gr.132100.111, 3396367, 22499666
-
Meisel RP, Malone JH, Clark AG. Disentangling the relationship between sex-biased gene expression and X-linkage. Genome Res 2012, 22(7):1255-1265. 10.1101/gr.132100.111, 3396367, 22499666.
-
(2012)
Genome Res
, vol.22
, Issue.7
, pp. 1255-1265
-
-
Meisel, R.P.1
Malone, J.H.2
Clark, A.G.3
-
22
-
-
77953768324
-
Female-biased expression on the X chromosome as a key step in sex chromosome evolution in threespine sticklebacks
-
10.1093/molbev/msq031, 20142438
-
Leder EH, Cano JM, Leinonen T, O'Hara RB, Nikinmaa M, Primmer CR, Merila J. Female-biased expression on the X chromosome as a key step in sex chromosome evolution in threespine sticklebacks. Mol Biol Evol 2010, 27(7):1495-1503. 10.1093/molbev/msq031, 20142438.
-
(2010)
Mol Biol Evol
, vol.27
, Issue.7
, pp. 1495-1503
-
-
Leder, E.H.1
Cano, J.M.2
Leinonen, T.3
O'Hara, R.B.4
Nikinmaa, M.5
Primmer, C.R.6
Merila, J.7
-
23
-
-
84876262163
-
Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution
-
10.1073/pnas.1217027110, 3631621, 23547111
-
Vicoso B, Kaiser VB, Bachtrog D. Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution. Proc Natl Acad Sci U S A 2013, 110(16):6453-6458. 10.1073/pnas.1217027110, 3631621, 23547111.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.16
, pp. 6453-6458
-
-
Vicoso, B.1
Kaiser, V.B.2
Bachtrog, D.3
-
24
-
-
84888580258
-
Evolutionary dynamics of Sex-biased genes in a hermaphrodite fungus
-
10.1093/molbev/mst143, 23966547
-
Whittle CA, Johannesson H. Evolutionary dynamics of Sex-biased genes in a hermaphrodite fungus. Mol Biol Evol 2013, 30(11):2435-2446. 10.1093/molbev/mst143, 23966547.
-
(2013)
Mol Biol Evol
, vol.30
, Issue.11
, pp. 2435-2446
-
-
Whittle, C.A.1
Johannesson, H.2
-
25
-
-
0037150614
-
Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences
-
Devlin RH, Nagahama Y. Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences. Aquaculture 2002, 208(3-4):191-364.
-
(2002)
Aquaculture
, vol.208
, Issue.3-4
, pp. 191-364
-
-
Devlin, R.H.1
Nagahama, Y.2
-
26
-
-
0035544469
-
Variability of genetic sex determination in poeciliid fishes
-
Volff JN, Schartl M. Variability of genetic sex determination in poeciliid fishes. Genetica 2001, 111(1-3):101-110.
-
(2001)
Genetica
, vol.111
, Issue.1-3
, pp. 101-110
-
-
Volff, J.N.1
Schartl, M.2
-
27
-
-
69249089410
-
Sex determination diversity and Sex chromosome evolution in poeciliid fish
-
Schultheis C, Böhne A, Schartl M, Volff JN, Galiana-Arnoux D. Sex determination diversity and Sex chromosome evolution in poeciliid fish. Sexual Dev 2009, 3(2-3):68-77.
-
(2009)
Sexual Dev
, vol.3
, Issue.2-3
, pp. 68-77
-
-
Schultheis, C.1
Böhne, A.2
Schartl, M.3
Volff, J.N.4
Galiana-Arnoux, D.5
-
29
-
-
0021084757
-
Natural and sexual selection on color patterns in poeciliid fishes
-
Endler J. Natural and sexual selection on color patterns in poeciliid fishes. Environ Biol Fish 1983, 9(2):173-190.
-
(1983)
Environ Biol Fish
, vol.9
, Issue.2
, pp. 173-190
-
-
Endler, J.1
-
30
-
-
0031080621
-
Small male mating advantage and reversed size dimorphism in poeciliid fishes
-
Bisazza A, Pilastro A. Small male mating advantage and reversed size dimorphism in poeciliid fishes. J Fish Biol 1997, 50(2):397-406.
-
(1997)
J Fish Biol
, vol.50
, Issue.2
, pp. 397-406
-
-
Bisazza, A.1
Pilastro, A.2
-
31
-
-
0002465339
-
The location of eighteen genes in Lebistes reticulatus
-
Winge T. The location of eighteen genes in Lebistes reticulatus. J of Gen 1927, 18(1):1-43.
-
(1927)
J of Gen
, vol.18
, Issue.1
, pp. 1-43
-
-
Winge, T.1
-
32
-
-
0000003853
-
The impact of predation on life-history evolution in trinidadian guppies (Poecilia reticulata)
-
Reznick D, Endler JA. The impact of predation on life-history evolution in trinidadian guppies (Poecilia reticulata). Evolution; Int J Organic Evolution 1982, 36(1):160-177.
-
(1982)
Evolution; Int J Organic Evolution
, vol.36
, Issue.1
, pp. 160-177
-
-
Reznick, D.1
Endler, J.A.2
-
33
-
-
84979133694
-
The evolution of dominance
-
Fisher RAS. The evolution of dominance. Biol Rev 1931, 6:345-368.
-
(1931)
Biol Rev
, vol.6
, pp. 345-368
-
-
Fisher, R.A.S.1
-
34
-
-
0034612511
-
Negative genetic correlation between male sexual attractiveness and survival
-
10.1038/35017552, 10894542
-
Brooks R. Negative genetic correlation between male sexual attractiveness and survival. Nature 2000, 406(6791):67-70. 10.1038/35017552, 10894542.
-
(2000)
Nature
, vol.406
, Issue.6791
, pp. 67-70
-
-
Brooks, R.1
-
35
-
-
79960839125
-
Sex-dependent selection differentially shapes genetic variation on and off the guppy Y chromosome
-
Postma E, Spyrou N, Rollins LA, Brooks RC. Sex-dependent selection differentially shapes genetic variation on and off the guppy Y chromosome. Evolution; Int J Organic Evolution 2011, 65(8):2145-2156.
-
(2011)
Evolution; Int J Organic Evolution
, vol.65
, Issue.8
, pp. 2145-2156
-
-
Postma, E.1
Spyrou, N.2
Rollins, L.A.3
Brooks, R.C.4
-
36
-
-
0025199545
-
Correlated evolution of female mating preferences and male color patterns in the guppy poecilia reticulata
-
10.1126/science.248.4961.1405, 17747527
-
Houde AE, Endler JA. Correlated evolution of female mating preferences and male color patterns in the guppy poecilia reticulata. Science 1990, 248(4961):1405-1408. 10.1126/science.248.4961.1405, 17747527.
-
(1990)
Science
, vol.248
, Issue.4961
, pp. 1405-1408
-
-
Houde, A.E.1
Endler, J.A.2
-
37
-
-
0034794975
-
Female guppies agree to differ: Phenotypic and genetic variation in mate-choice behavior and the consequences for sexual selection
-
Brooks R, Endler JA. Female guppies agree to differ: Phenotypic and genetic variation in mate-choice behavior and the consequences for sexual selection. Evolution; Int J Organic Evolution 2001, 55(8):1644-1655.
-
(2001)
Evolution; Int J Organic Evolution
, vol.55
, Issue.8
, pp. 1644-1655
-
-
Brooks, R.1
Endler, J.A.2
-
39
-
-
0035704911
-
Sexual conflict and evolution in Trinidadian guppies
-
Magurran AE. Sexual conflict and evolution in Trinidadian guppies. Genetica 2001, 112-113:463-474.
-
(2001)
Genetica
, vol.112-113
, pp. 463-474
-
-
Magurran, A.E.1
-
40
-
-
0030603186
-
Battle of the sexes
-
Magurran AE. Battle of the sexes. Nature 1996, 383(6598):307.
-
(1996)
Nature
, vol.383
, Issue.6598
, pp. 307
-
-
Magurran, A.E.1
-
41
-
-
72749091458
-
Predicting the direction of ornament evolution in Trinidadian guppies (Poecilia reticulata)
-
Kemp DJ, Reznick DN, Grether GF, Endler JA. Predicting the direction of ornament evolution in Trinidadian guppies (Poecilia reticulata). Proceedings Biol Sci / The Royal Soc 2009, 276(1677):4335-4343.
-
(2009)
Proceedings Biol Sci / The Royal Soc
, vol.276
, Issue.1677
, pp. 4335-4343
-
-
Kemp, D.J.1
Reznick, D.N.2
Grether, G.F.3
Endler, J.A.4
-
42
-
-
0032168345
-
Sex and schooling behaviour in the Trinidadian guppy
-
10.1006/anbe.1998.0767, 9784218
-
Griffiths SW, Magurran AE. Sex and schooling behaviour in the Trinidadian guppy. Anim Behav 1998, 56(3):689-693. 10.1006/anbe.1998.0767, 9784218.
-
(1998)
Anim Behav
, vol.56
, Issue.3
, pp. 689-693
-
-
Griffiths, S.W.1
Magurran, A.E.2
-
43
-
-
0034973225
-
Direct and indirect sexual selection and quantitative genetics of male traits in guppies (Poecilia reticulata)
-
Brooks R, Endler JA. Direct and indirect sexual selection and quantitative genetics of male traits in guppies (Poecilia reticulata). Evolution; Int J Organic Evolution 2001, 55(5):1002-1015.
-
(2001)
Evolution; Int J Organic Evolution
, vol.55
, Issue.5
, pp. 1002-1015
-
-
Brooks, R.1
Endler, J.A.2
-
45
-
-
66749091738
-
Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation
-
Tripathi N, Hoffmann M, Willing EM, Lanz C, Weigel D, Dreyer C. Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proceedings Biol Sci/The Royal Soc 2009, 276(1665):2195-2208.
-
(2009)
Proceedings Biol Sci/The Royal Soc
, vol.276
, Issue.1665
, pp. 2195-2208
-
-
Tripathi, N.1
Hoffmann, M.2
Willing, E.M.3
Lanz, C.4
Weigel, D.5
Dreyer, C.6
-
46
-
-
34848856140
-
ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata
-
10.1186/1471-2164-8-269, 1994688, 17686157
-
Dreyer C, Hoffmann M, Lanz C, Willing EM, Riester M, Warthmann N, Sprecher A, Tripathi N, Henz SR, Weigel D. ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata. BMC Genomics 2007, 8:269. 10.1186/1471-2164-8-269, 1994688, 17686157.
-
(2007)
BMC Genomics
, vol.8
, pp. 269
-
-
Dreyer, C.1
Hoffmann, M.2
Lanz, C.3
Willing, E.M.4
Riester, M.5
Warthmann, N.6
Sprecher, A.7
Tripathi, N.8
Henz, S.R.9
Weigel, D.10
-
47
-
-
79954580291
-
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome
-
10.1186/1471-2164-12-202, 3113783, 21507250
-
Fraser BA, Weadick CJ, Janowitz I, Rodd FH, Hughes KA. Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome. BMC Genomics 2011, 12:202. 10.1186/1471-2164-12-202, 3113783, 21507250.
-
(2011)
BMC Genomics
, vol.12
, pp. 202
-
-
Fraser, B.A.1
Weadick, C.J.2
Janowitz, I.3
Rodd, F.H.4
Hughes, K.A.5
-
48
-
-
0001233943
-
Polymorphism and population structure in Lebistes reticulatus, an ecological study
-
Austin: Austin, Texas: University of Texas Press, Blair WF
-
Haskins CP, Haskins EF, McLaughlin JJA, Hewitt RE. Polymorphism and population structure in Lebistes reticulatus, an ecological study. Vertebrate Speciation 1961, 320-395. Austin: Austin, Texas: University of Texas Press, Blair WF.
-
(1961)
Vertebrate Speciation
, pp. 320-395
-
-
Haskins, C.P.1
Haskins, E.F.2
McLaughlin, J.J.A.3
Hewitt, R.E.4
-
50
-
-
84891767394
-
RefSeq: an update on mammalian reference sequences
-
Database issue, 3965018, 24259432
-
Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J, Landrum MJ, McGarvey KM, Murphy MR, O'Leary NA, Pujar S, Rajput B, Rangwala SH, Riddick LD, Shkeda A, Sun H, Tamez P, Tully RE, Wallin C, Webb D, Weber J, Wu W, DiCuccio M, Kitts P, Maglott DR, Murphy TD, Ostell JM. RefSeq: an update on mammalian reference sequences. Nucleic Acids Res 2014, 42(Database issue):D756-D763. ftp://ftp.ncbi.nih.gov/blast/db, 3965018, 24259432.
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Pruitt, K.D.1
Brown, G.R.2
Hiatt, S.M.3
Thibaud-Nissen, F.4
Astashyn, A.5
Ermolaeva, O.6
Farrell, C.M.7
Hart, J.8
Landrum, M.J.9
McGarvey, K.M.10
Murphy, M.R.11
O'Leary, N.A.12
Pujar, S.13
Rajput, B.14
Rangwala, S.H.15
Riddick, L.D.16
Shkeda, A.17
Sun, H.18
Tamez, P.19
Tully, R.E.20
Wallin, C.21
Webb, D.22
Weber, J.23
Wu, W.24
DiCuccio, M.25
Kitts, P.26
Maglott, D.R.27
Murphy, T.D.28
Ostell, J.M.29
more..
-
51
-
-
84878607707
-
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits
-
10.1038/ng.2604, 3677569, 23542700
-
Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, Amores A, Braasch I, Chalopin D, Volff JN, Lesch KP, Bisazza A, Minx P, Hillier L, Wilson RK, Fuerstenberg S, Boore J, Searle S, Postlethwait JH, Warren WC. The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits. Nat Genet 2013, 45(5):567-572. 10.1038/ng.2604, 3677569, 23542700.
-
(2013)
Nat Genet
, vol.45
, Issue.5
, pp. 567-572
-
-
Schartl, M.1
Walter, R.B.2
Shen, Y.3
Garcia, T.4
Catchen, J.5
Amores, A.6
Braasch, I.7
Chalopin, D.8
Volff, J.N.9
Lesch, K.P.10
Bisazza, A.11
Minx, P.12
Hillier, L.13
Wilson, R.K.14
Fuerstenberg, S.15
Boore, J.16
Searle, S.17
Postlethwait, J.H.18
Warren, W.C.19
-
52
-
-
77951764763
-
Pigmentation pathway evolution after whole-genome duplication in fish
-
Braasch I, Brunet F, Volff JN, Schartl M. Pigmentation pathway evolution after whole-genome duplication in fish. Genome Biol Evolution 2009, 1:479-493.
-
(2009)
Genome Biol Evolution
, vol.1
, pp. 479-493
-
-
Braasch, I.1
Brunet, F.2
Volff, J.N.3
Schartl, M.4
-
53
-
-
67849116103
-
Linkage analysis reveals the independent origin of Poeciliid sex chromosomes and a case of atypical sex inheritance in the guppy (Poecilia reticulata)
-
10.1534/genetics.108.098541, 2674833, 19299341
-
Tripathi N, Hoffmann M, Weigel D, Dreyer C. Linkage analysis reveals the independent origin of Poeciliid sex chromosomes and a case of atypical sex inheritance in the guppy (Poecilia reticulata). Genetics 2009, 182(1):365-374. 10.1534/genetics.108.098541, 2674833, 19299341.
-
(2009)
Genetics
, vol.182
, Issue.1
, pp. 365-374
-
-
Tripathi, N.1
Hoffmann, M.2
Weigel, D.3
Dreyer, C.4
-
54
-
-
5044252972
-
Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
-
10.1534/genetics.104.028944, 1448110, 15454550
-
Subramanian S, Kumar S. Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. Genetics 2004, 168(1):373-381. 10.1534/genetics.104.028944, 1448110, 15454550.
-
(2004)
Genetics
, vol.168
, Issue.1
, pp. 373-381
-
-
Subramanian, S.1
Kumar, S.2
-
55
-
-
84872483518
-
Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments
-
10.1111/mec.12014, 22998089
-
Vijay N, Poelstra JW, Kunstner A, Wolf JB. Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments. Mol Ecol 2013, 22(3):620-634. 10.1111/mec.12014, 22998089.
-
(2013)
Mol Ecol
, vol.22
, Issue.3
, pp. 620-634
-
-
Vijay, N.1
Poelstra, J.W.2
Kunstner, A.3
Wolf, J.B.4
-
56
-
-
84873719491
-
Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq
-
10.1007/s11427-013-4442-z, 23393030
-
Lu B, Zeng Z, Shi T. Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq. Sci China Life Sci 2013, 56(2):143-155. 10.1007/s11427-013-4442-z, 23393030.
-
(2013)
Sci China Life Sci
, vol.56
, Issue.2
, pp. 143-155
-
-
Lu, B.1
Zeng, Z.2
Shi, T.3
-
57
-
-
84991528460
-
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
-
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, Durbin R, Earl D, Emrich S, Fedotov P, Fonseca NA Ganapathy G, Gibbs RA, Gnerre S, Godzaridis E, Goldstein S, Haimel M, Hall G, Haussler D, Hiatt JB, Ho IY, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaSci 2013, 2(1):10.
-
(2013)
GigaSci
, vol.2
, Issue.1
, pp. 10
-
-
Bradnam, K.R.1
Fass, J.N.2
Alexandrov, A.3
Baranay, P.4
Bechner, M.5
Birol, I.6
Boisvert, S.7
Chapman, J.A.8
Chapuis, G.9
Chikhi, R.10
Chitsaz, H.11
Chou, W.C.12
Corbeil, J.13
Del Fabbro, C.14
Docking, T.R.15
Durbin, R.16
Earl, D.17
Emrich, S.18
Fedotov, P.19
Fonseca NA Ganapathy, G.20
Gibbs, R.A.21
Gnerre, S.22
Godzaridis, E.23
Goldstein, S.24
Haimel, M.25
Hall, G.26
Haussler, D.27
Hiatt, J.B.28
Ho, I.Y.29
more..
-
59
-
-
0020871160
-
The structure of guppy life histories: the tradeoff between growth and reproduction
-
Reznick D. The structure of guppy life histories: the tradeoff between growth and reproduction. Ecology 1983, 64(4):862-873.
-
(1983)
Ecology
, vol.64
, Issue.4
, pp. 862-873
-
-
Reznick, D.1
-
60
-
-
36448981767
-
Proliferation, neurogenesis and regeneration in the non-mammalian vertebrate brain
-
Kaslin J, Ganz J, Brand M. Proliferation, neurogenesis and regeneration in the non-mammalian vertebrate brain. Philos Trans R Soc Lond Ser B Biol Sci 2008, 363(1489):101-122.
-
(2008)
Philos Trans R Soc Lond Ser B Biol Sci
, vol.363
, Issue.1489
, pp. 101-122
-
-
Kaslin, J.1
Ganz, J.2
Brand, M.3
-
61
-
-
78649997365
-
Aromatase, brain sexualization and plasticity: the fish paradigm
-
Le Page Y, Diotel N, Vaillant C, Pellegrini E, Anglade I, Merot Y, Kah O. Aromatase, brain sexualization and plasticity: the fish paradigm. Eur J Neuro Sci 2010, 32(12):2105-2115.
-
(2010)
Eur J Neuro Sci
, vol.32
, Issue.12
, pp. 2105-2115
-
-
Le Page, Y.1
Diotel, N.2
Vaillant, C.3
Pellegrini, E.4
Anglade, I.5
Merot, Y.6
Kah, O.7
-
62
-
-
80053917265
-
Extracellular matrix molecules, their receptors, and secreted proteases in synaptic plasticity
-
10.1002/dneu.20958, 21793226
-
Wlodarczyk J, Mukhina I, Kaczmarek L, Dityatev A. Extracellular matrix molecules, their receptors, and secreted proteases in synaptic plasticity. Dev Neurobiol 2011, 71(11):1040-1053. 10.1002/dneu.20958, 21793226.
-
(2011)
Dev Neurobiol
, vol.71
, Issue.11
, pp. 1040-1053
-
-
Wlodarczyk, J.1
Mukhina, I.2
Kaczmarek, L.3
Dityatev, A.4
-
63
-
-
84861066726
-
Neural functions of matrix metalloproteinases: plasticity, neurogenesis, and disease
-
3332068, 22567285
-
Fujioka H, Dairyo Y, Yasunaga K, Emoto K. Neural functions of matrix metalloproteinases: plasticity, neurogenesis, and disease. Biochem Res Int 2012, 2012:789083. 3332068, 22567285.
-
(2012)
Biochem Res Int
, vol.2012
, pp. 789083
-
-
Fujioka, H.1
Dairyo, Y.2
Yasunaga, K.3
Emoto, K.4
-
64
-
-
0033830659
-
Diffusion of foraging innovations in the guppy
-
10.1006/anbe.2000.1450, 10973718
-
Reader SM, Laland KN. Diffusion of foraging innovations in the guppy. Anim Behav 2000, 60(2):175-180. 10.1006/anbe.2000.1450, 10973718.
-
(2000)
Anim Behav
, vol.60
, Issue.2
, pp. 175-180
-
-
Reader, S.M.1
Laland, K.N.2
-
65
-
-
0033784476
-
Sex differences in behaviour as an indirect consequence of mating system
-
Magurran AE, Garcia CM. Sex differences in behaviour as an indirect consequence of mating system. J Fish Biol 2000, 57(4):839-857.
-
(2000)
J Fish Biol
, vol.57
, Issue.4
, pp. 839-857
-
-
Magurran, A.E.1
Garcia, C.M.2
-
66
-
-
79952273896
-
Galanin Systems in Non-mammalian Vertebrates with Special Focus on Fishes
-
Basel: Springer, Hökfelt T, vol. 102
-
Mensah E, Volkoff H, Unniappan S. Galanin Systems in Non-mammalian Vertebrates with Special Focus on Fishes. Galanin 2010, 243-262. Basel: Springer, Hökfelt T, vol. 102.
-
(2010)
Galanin
, pp. 243-262
-
-
Mensah, E.1
Volkoff, H.2
Unniappan, S.3
-
67
-
-
0026079293
-
Sexually dimorphic distribution of a galanin-like peptide in the central nervous system of the teleost fish Poecilia latipinna
-
10.1002/cne.903040410, 1707426
-
Cornbrooks EB, Parsons RL. Sexually dimorphic distribution of a galanin-like peptide in the central nervous system of the teleost fish Poecilia latipinna. J Comp Neurol 1991, 304(4):639-657. 10.1002/cne.903040410, 1707426.
-
(1991)
J Comp Neurol
, vol.304
, Issue.4
, pp. 639-657
-
-
Cornbrooks, E.B.1
Parsons, R.L.2
-
68
-
-
0025977934
-
Source of sexually dimorphic galanin-like immunoreactive projections in the teleost fish Poecilia latipinna
-
10.1002/cne.903040411, 1707427
-
Cornbrooks EB, Parsons RL. Source of sexually dimorphic galanin-like immunoreactive projections in the teleost fish Poecilia latipinna. J Comp Neurol 1991, 304(4):658-665. 10.1002/cne.903040411, 1707427.
-
(1991)
J Comp Neurol
, vol.304
, Issue.4
, pp. 658-665
-
-
Cornbrooks, E.B.1
Parsons, R.L.2
-
69
-
-
84888213906
-
Antagonistic roles of Dmrt1 and Foxl2 in Sex differentiation via estrogen production in tilapia as demonstrated by TALENs
-
10.1210/en.2013-1451, 24105480
-
Li MH, Yang HH, Li MR, Sun YL, Jiang XL, Xie QP, Wang TR, Shi HJ, Sun LN, Zhou LY, Wang DS. Antagonistic roles of Dmrt1 and Foxl2 in Sex differentiation via estrogen production in tilapia as demonstrated by TALENs. Endocrinology 2013, 154(12):4814-4825. 10.1210/en.2013-1451, 24105480.
-
(2013)
Endocrinology
, vol.154
, Issue.12
, pp. 4814-4825
-
-
Li, M.H.1
Yang, H.H.2
Li, M.R.3
Sun, Y.L.4
Jiang, X.L.5
Xie, Q.P.6
Wang, T.R.7
Shi, H.J.8
Sun, L.N.9
Zhou, L.Y.10
Wang, D.S.11
-
70
-
-
38549092514
-
Sexual dimorphic expression of genes in gonads during early differentiation of a teleost fish, the Nile tilapia Oreochromis niloticus
-
10.1095/biolreprod.107.064246, 17942796
-
Ijiri S, Kaneko H, Kobayashi T, Wang DS, Sakai F, Paul-Prasanth B, Nakamura M, Nagahama Y. Sexual dimorphic expression of genes in gonads during early differentiation of a teleost fish, the Nile tilapia Oreochromis niloticus. Biol Reprod 2008, 78(2):333-341. 10.1095/biolreprod.107.064246, 17942796.
-
(2008)
Biol Reprod
, vol.78
, Issue.2
, pp. 333-341
-
-
Ijiri, S.1
Kaneko, H.2
Kobayashi, T.3
Wang, D.S.4
Sakai, F.5
Paul-Prasanth, B.6
Nakamura, M.7
Nagahama, Y.8
-
71
-
-
71149084102
-
Females battle to suppress their inner male
-
10.1016/j.cell.2009.11.036, 20005799
-
Sinclair A, Smith C. Females battle to suppress their inner male. Cell 2009, 139(6):1051-1053. 10.1016/j.cell.2009.11.036, 20005799.
-
(2009)
Cell
, vol.139
, Issue.6
, pp. 1051-1053
-
-
Sinclair, A.1
Smith, C.2
-
72
-
-
80053232369
-
Forkhead transcription factors in ovarian function
-
10.1530/REP-11-0092, 21810859
-
Uhlenhaut NH, Treier M. Forkhead transcription factors in ovarian function. Reproduction 2011, 142(4):489-495. 10.1530/REP-11-0092, 21810859.
-
(2011)
Reproduction
, vol.142
, Issue.4
, pp. 489-495
-
-
Uhlenhaut, N.H.1
Treier, M.2
-
73
-
-
0017857649
-
Reproductive adaptations among viviparous fishes (Cyprinodontiformes: Poeciliidae)
-
Thibault RE, Schultz RJ. Reproductive adaptations among viviparous fishes (Cyprinodontiformes: Poeciliidae). Evolution; Int J Organic Evol 1978, 32(2):320-333.
-
(1978)
Evolution; Int J Organic Evol
, vol.32
, Issue.2
, pp. 320-333
-
-
Thibault, R.E.1
Schultz, R.J.2
-
74
-
-
84982074789
-
Pseudoamnion, pseudochorion, and follicular pseudoplacenta in poeciliid fishes
-
Turner CL. Pseudoamnion, pseudochorion, and follicular pseudoplacenta in poeciliid fishes. J Morphol 1940, 67(1):59-89.
-
(1940)
J Morphol
, vol.67
, Issue.1
, pp. 59-89
-
-
Turner, C.L.1
-
75
-
-
0039793811
-
The fine structure of the ovarian follicle of the ovoviviparous poeciliid fish, Lebistes reticulatus. I. Maturation of follicular epithelium
-
10.1002/jmor.1051140308, 14165137
-
Jollie WP, Jollie LG. The fine structure of the ovarian follicle of the ovoviviparous poeciliid fish, Lebistes reticulatus. I. Maturation of follicular epithelium. J Morphol 1964, 114(3):479-501. 10.1002/jmor.1051140308, 14165137.
-
(1964)
J Morphol
, vol.114
, Issue.3
, pp. 479-501
-
-
Jollie, W.P.1
Jollie, L.G.2
-
76
-
-
0346460960
-
Paucity of genes on the Drosophila X chromosome showing male-biased expression
-
10.1126/science.1079190, 1363366, 12511656
-
Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 2003, 299(5607):697-700. 10.1126/science.1079190, 1363366, 12511656.
-
(2003)
Science
, vol.299
, Issue.5607
, pp. 697-700
-
-
Parisi, M.1
Nuttall, R.2
Naiman, D.3
Bouffard, G.4
Malley, J.5
Andrews, J.6
Eastman, S.7
Oliver, B.8
-
77
-
-
2642558614
-
The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation
-
10.1038/ng1368, 15156144
-
Khil PP, Smirnova NA, Romanienko PJ, Camerini-Otero RD. The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation. Nat Genet 2004, 36(6):642-646. 10.1038/ng1368, 15156144.
-
(2004)
Nat Genet
, vol.36
, Issue.6
, pp. 642-646
-
-
Khil, P.P.1
Smirnova, N.A.2
Romanienko, P.J.3
Camerini-Otero, R.D.4
-
78
-
-
0035213054
-
Meiotic chromosomes and stages of sex chromosome evolution in fish: zebrafish, platyfish and guppy
-
10.1023/A:1012956324417, 11778689
-
Traut W, Winking H. Meiotic chromosomes and stages of sex chromosome evolution in fish: zebrafish, platyfish and guppy. Chromosome Res 2001, 9(8):659-672. 10.1023/A:1012956324417, 11778689.
-
(2001)
Chromosome Res
, vol.9
, Issue.8
, pp. 659-672
-
-
Traut, W.1
Winking, H.2
-
79
-
-
37549025449
-
Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain
-
10.1093/molbev/msm208, 17893399
-
Mank JE, Hultin-Rosenberg L, Axelsson E, Ellegren H. Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain. Mol Biol Evol 2007, 24(12):2698-2706. 10.1093/molbev/msm208, 17893399.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.12
, pp. 2698-2706
-
-
Mank, J.E.1
Hultin-Rosenberg, L.2
Axelsson, E.3
Ellegren, H.4
-
80
-
-
84863185415
-
Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution
-
Grath S, Parsch J. Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution. Genome Biol Evolution 2012, 4(3):346-359.
-
(2012)
Genome Biol Evolution
, vol.4
, Issue.3
, pp. 346-359
-
-
Grath, S.1
Parsch, J.2
-
81
-
-
67649130521
-
Are sex-biased genes more dispensable?
-
10.1098/rsbl.2008.0732, 2679909, 19433612
-
Mank JE, Ellegren H. Are sex-biased genes more dispensable?. Biol Lett 2009, 5(3):409-412. 10.1098/rsbl.2008.0732, 2679909, 19433612.
-
(2009)
Biol Lett
, vol.5
, Issue.3
, pp. 409-412
-
-
Mank, J.E.1
Ellegren, H.2
-
82
-
-
77953798665
-
Ontogenetic complexity of sexual dimorphism and sex-specific selection
-
10.1093/molbev/msq042, 20142440
-
Mank JE, Nam K, Brunstrom B, Ellegren H. Ontogenetic complexity of sexual dimorphism and sex-specific selection. Mol Biol Evol 2010, 27(7):1570-1578. 10.1093/molbev/msq042, 20142440.
-
(2010)
Mol Biol Evol
, vol.27
, Issue.7
, pp. 1570-1578
-
-
Mank, J.E.1
Nam, K.2
Brunstrom, B.3
Ellegren, H.4
-
83
-
-
85047700164
-
The rapid evolution of reproductive proteins
-
Swanson WJ, Vacquier VD. The rapid evolution of reproductive proteins. Nat Rev Genet 2002, 3(2):137-144.
-
(2002)
Nat Rev Genet
, vol.3
, Issue.2
, pp. 137-144
-
-
Swanson, W.J.1
Vacquier, V.D.2
-
84
-
-
0034708031
-
Rapid evolution of reproductive barriers driven by sexual conflict
-
10.1038/35002564, 10706284
-
Gavrilets S. Rapid evolution of reproductive barriers driven by sexual conflict. Nature 2000, 403(6772):886-889. 10.1038/35002564, 10706284.
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 886-889
-
-
Gavrilets, S.1
-
85
-
-
0037044727
-
Sperm-female coevolution in Drosophila
-
10.1126/science.1076968, 12424377
-
Miller GT, Pitnick S. Sperm-female coevolution in Drosophila. Science 2002, 298(5596):1230-1233. 10.1126/science.1076968, 12424377.
-
(2002)
Science
, vol.298
, Issue.5596
, pp. 1230-1233
-
-
Miller, G.T.1
Pitnick, S.2
-
87
-
-
33645037040
-
The effect of social environment on male-male competition in guppies (Poecilia reticulata)
-
Price AC, Helen Rodd F. The effect of social environment on male-male competition in guppies (Poecilia reticulata). Ethology 2006, 112(1):22-32.
-
(2006)
Ethology
, vol.112
, Issue.1
, pp. 22-32
-
-
Price, A.C.1
Helen Rodd, F.2
-
88
-
-
1542319052
-
Male mate choice in the guppy (Poecilia reticulata): Do males prefer larger females as mates?
-
Herdman EJE, Kelly CD, Godin J-GJ. Male mate choice in the guppy (Poecilia reticulata): Do males prefer larger females as mates?. Ethology 2004, 110(2):97-111.
-
(2004)
Ethology
, vol.110
, Issue.2
, pp. 97-111
-
-
Herdman, E.J.E.1
Kelly, C.D.2
Godin, J.-G.J.3
-
89
-
-
0030617889
-
Evaluation of the rate of evolution in natural populations of guppies (Poecilia reticulata)
-
10.1126/science.275.5308.1934, 9072971
-
Reznick DN, Shaw FH, Rodd FH, Shaw RG. Evaluation of the rate of evolution in natural populations of guppies (Poecilia reticulata). Science 1997, 275(5308):1934-1937. 10.1126/science.275.5308.1934, 9072971.
-
(1997)
Science
, vol.275
, Issue.5308
, pp. 1934-1937
-
-
Reznick, D.N.1
Shaw, F.H.2
Rodd, F.H.3
Shaw, R.G.4
-
90
-
-
38349083274
-
Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression
-
10.1086/523954, 18171149
-
Mank JE, Hultin-Rosenberg L, Zwahlen M, Ellegren H. Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression. Am Nat 2008, 171(1):35-43. 10.1086/523954, 18171149.
-
(2008)
Am Nat
, vol.171
, Issue.1
, pp. 35-43
-
-
Mank, J.E.1
Hultin-Rosenberg, L.2
Zwahlen, M.3
Ellegren, H.4
-
91
-
-
4444340536
-
Subfunction partitioning, the teleost radiation and the annotation of the human genome
-
10.1016/j.tig.2004.08.001, 15363902
-
Postlethwait J, Amores A, Cresko W, Singer A, Yan Y-L. Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet 2004, 20(10):481-490. 10.1016/j.tig.2004.08.001, 15363902.
-
(2004)
Trends Genet
, vol.20
, Issue.10
, pp. 481-490
-
-
Postlethwait, J.1
Amores, A.2
Cresko, W.3
Singer, A.4
Yan, Y.-L.5
-
92
-
-
77953642090
-
Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies
-
10.1111/j.1365-294X.2010.04528.x, 20149094
-
Willing EM, Bentzen P, van Oosterhout C, Hoffmann M, Cable J, Breden F, Weigel D, Dreyer C. Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Mol Ecol 2010, 19(5):968-984. 10.1111/j.1365-294X.2010.04528.x, 20149094.
-
(2010)
Mol Ecol
, vol.19
, Issue.5
, pp. 968-984
-
-
Willing, E.M.1
Bentzen, P.2
van Oosterhout, C.3
Hoffmann, M.4
Cable, J.5
Breden, F.6
Weigel, D.7
Dreyer, C.8
-
93
-
-
33644904570
-
In vitro culture of embryos of the guppy, Poecilia reticulata
-
Martyn U, Weigel D, Dreyer C. In vitro culture of embryos of the guppy, Poecilia reticulata. Dev Dynam 2006, 235(3):617-622.
-
(2006)
Dev Dynam
, vol.235
, Issue.3
, pp. 617-622
-
-
Martyn, U.1
Weigel, D.2
Dreyer, C.3
-
94
-
-
68349086946
-
SHOREmap: simultaneous mapping and mutation identification by deep sequencing
-
10.1038/nmeth0809-550, 19644454
-
Schneeberger K, Ossowski S, Lanz C, Juul T, Petersen AH, Nielsen KL, Jorgensen JE, Weigel D, Andersen SU. SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat Methods 2009, 6(8):550-551. 10.1038/nmeth0809-550, 19644454.
-
(2009)
Nat Methods
, vol.6
, Issue.8
, pp. 550-551
-
-
Schneeberger, K.1
Ossowski, S.2
Lanz, C.3
Juul, T.4
Petersen, A.H.5
Nielsen, K.L.6
Jorgensen, J.E.7
Weigel, D.8
Andersen, S.U.9
-
95
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 2011, 17:10-12.
-
(2011)
EMBnet.journal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
96
-
-
80054784996
-
ConDeTri-a content dependent read trimmer for Illumina data
-
10.1371/journal.pone.0026314, 3198461, 22039460
-
Smeds L, Kunstner A. ConDeTri-a content dependent read trimmer for Illumina data. PLoS One 2011, 6(10):e26314. 10.1371/journal.pone.0026314, 3198461, 22039460.
-
(2011)
PLoS One
, vol.6
, Issue.10
-
-
Smeds, L.1
Kunstner, A.2
-
97
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
10.1038/nbt.1883, 3571712, 21572440
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 2011, 29(7):644-652. 10.1038/nbt.1883, 3571712, 21572440.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.7
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
Adiconis, X.7
Fan, L.8
Raychowdhury, R.9
Zeng, Q.10
Chen, Z.11
Mauceli, E.12
Hacohen, N.13
Gnirke, A.14
Rhind, N.15
di Palma, F.16
Birren, B.W.17
Nusbaum, C.18
Lindblad-Toh, K.19
Friedman, N.20
Regev, A.21
more..
-
98
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
10.1038/nbt.1621, 3146043, 20436464
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010, 28(5):511-515. 10.1038/nbt.1621, 3146043, 20436464.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.5
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
99
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protocols 2012, 7(3):562-578.
-
(2012)
Nat Protocols
, vol.7
, Issue.3
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
100
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
10.1093/bioinformatics/btl158, 16731699
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22(13):1658-1659. 10.1093/bioinformatics/btl158, 16731699.
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
101
-
-
84870431038
-
CD-HIT: accelerated for clustering the next-generation sequencing data
-
10.1093/bioinformatics/bts565, 3516142, 23060610
-
Fu L, Niu B, Zhu Z, Wu S, Li W. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 2012, 28(23):3150-3152. 10.1093/bioinformatics/bts565, 3516142, 23060610.
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
Wu, S.4
Li, W.5
-
102
-
-
84875391572
-
Ensembl 2013
-
3531136, 23203987
-
Flicek P, Ahmed I, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S, Gil L, Garcia-Giron C, Gordon L, Hourlier T, Hunt S, Juettemann T, Kahari AK, Keenan S, Komorowska M, Kulesha E, Longden I, Maurel T, McLaren WM, Muffato M, Nag R, Overduin B, Pignatelli M, Pritchard B, Pritchard E, et al. Ensembl 2013. Nucleic Acids Res 2013, 41(Database issue):D48-D55. 3531136, 23203987.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
Barrell, D.4
Beal, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fairley, S.10
Fitzgerald, S.11
Gil, L.12
Garcia-Giron, C.13
Gordon, L.14
Hourlier, T.15
Hunt, S.16
Juettemann, T.17
Kahari, A.K.18
Keenan, S.19
Komorowska, M.20
Kulesha, E.21
Longden, I.22
Maurel, T.23
McLaren, W.M.24
Muffato, M.25
Nag, R.26
Overduin, B.27
Pignatelli, M.28
Pritchard, B.29
Pritchard, E.30
more..
-
103
-
-
79955142868
-
Proteinortho: detection of (co-)orthologs in large-scale analysis
-
10.1186/1471-2105-12-124, 3114741, 21526987
-
Lechner M, Findeiss S, Steiner L, Marz M, Stadler PF, Prohaska SJ. Proteinortho: detection of (co-)orthologs in large-scale analysis. BMC Bioinformatics 2011, 12:124. 10.1186/1471-2105-12-124, 3114741, 21526987.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 124
-
-
Lechner, M.1
Findeiss, S.2
Steiner, L.3
Marz, M.4
Stadler, P.F.5
Prohaska, S.J.6
-
104
-
-
0025183708
-
Basic local alignment search tool
-
10.1016/S0022-2836(05)80360-2, 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215(3):403-410. 10.1016/S0022-2836(05)80360-2, 2231712.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
105
-
-
84872043258
-
A Reference-Free Algorithm for Computational Normalization of Shotgun Sequencing Data
-
eprint arXiv:1203.4802
-
Brown CT, Howe A, Zhang Q, Pyrkosz AB, Brom TH. A Reference-Free Algorithm for Computational Normalization of Shotgun Sequencing Data. 2012, eprint arXiv:1203.4802.
-
(2012)
-
-
Brown, C.T.1
Howe, A.2
Zhang, Q.3
Pyrkosz, A.B.4
Brom, T.H.5
-
106
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
10.1038/nmeth.1923, 3322381, 22388286
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods 2012, 9(4):357-359. 10.1038/nmeth.1923, 3322381, 22388286.
-
(2012)
Nat Methods
, vol.9
, Issue.4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
107
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
10.1093/nar/gkn176, 2425479, 18445632
-
Gotz S, Garcia-Gomez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talon M, Dopazo J, Conesa A. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 2008, 36(10):3420-3435. 10.1093/nar/gkn176, 2425479, 18445632.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.10
, pp. 3420-3435
-
-
Gotz, S.1
Garcia-Gomez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
Nueda, M.J.6
Robles, M.7
Talon, M.8
Dopazo, J.9
Conesa, A.10
-
108
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
10.1093/bioinformatics/bti310, 15728110
-
Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21(9):1859-1875. 10.1093/bioinformatics/bti310, 15728110.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
109
-
-
84871946825
-
Streaming fragment assignment for real-time analysis of sequencing experiments
-
3880119, 23160280
-
Roberts A, Pachter L. Streaming fragment assignment for real-time analysis of sequencing experiments. Nat Methods 2013, 10(1):71-73. 3880119, 23160280.
-
(2013)
Nat Methods
, vol.10
, Issue.1
, pp. 71-73
-
-
Roberts, A.1
Pachter, L.2
-
110
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
10.1186/gb-2004-5-10-r80, 545600, 15461798
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 2004, 5(10):R80. 10.1186/gb-2004-5-10-r80, 545600, 15461798.
-
(2004)
Genome Biol
, vol.5
, Issue.10
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
111
-
-
75249087100
-
EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
10.1093/bioinformatics/btp616, 2796818, 19910308
-
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26(1):139-140. 10.1093/bioinformatics/btp616, 2796818, 19910308.
-
(2010)
Bioinformatics
, vol.26
, Issue.1
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
112
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
10.1186/gb-2010-11-3-r25, 2864565, 20196867
-
Robinson MD, Oshlack A. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol 2010, 11(3):R25. 10.1186/gb-2010-11-3-r25, 2864565, 20196867.
-
(2010)
Genome Biol
, vol.11
, Issue.3
-
-
Robinson, M.D.1
Oshlack, A.2
-
113
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
10.1093/bioinformatics/btm453, 17881408
-
Robinson MD, Smyth GK. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics 2007, 23(21):2881-2887. 10.1093/bioinformatics/btm453, 17881408.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
114
-
-
84155170296
-
TopGO: topGO: enrichment analysis for gene ontology. R package version 2.10.0
-
Alexa A, Rahnenfuhrer J. TopGO: topGO: enrichment analysis for gene ontology. R package version 2.10.0. 2010,
-
(2010)
-
-
Alexa, A.1
Rahnenfuhrer, J.2
-
115
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Statist Soc Ser 1995, B 57(1):289-300.
-
(1995)
J Roy Statist Soc Ser
, vol.57 B
, Issue.1
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
117
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
10.1093/molbev/mst010, 3603318, 23329690
-
Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 2013, 30(4):772-780. 10.1093/molbev/mst010, 3603318, 23329690.
-
(2013)
Mol Biol Evol
, vol.30
, Issue.4
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
118
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088, 17483113
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591. 10.1093/molbev/msm088, 17483113.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
|