-
1
-
-
33745402414
-
A novel class of small RNAs bind to MILI protein in mouse testes
-
DOI 10.1038/nature04916, PII NATURE04916
-
A. Aravin, D. Gaidatzis, S. Pfeffer, M. Lagos-Quintana, P. Landgraf, N. Iovino, P. Morris, M.J. Brownstein, S. Kuramochi-Miyagawa, T. Nakano, M. Chien, J.J. Russo, J. Ju, R. Sheridan, C. Sander, M. Zavolan, and T. Tuschl A novel class of small RNAs bind to MILI protein in mouse testes Nature 442 July (7099) 2006 203 207 (Pubitemid 44086567)
-
(2006)
Nature
, vol.442
, Issue.7099
, pp. 203-207
-
-
Aravin, A.1
Gaidatzis, D.2
Pfeffer, S.3
Lagos-Quintana, M.4
Landgraf, P.5
Iovino, N.6
Morris, P.7
Brownstein, M.J.8
Kuramochi-Miyagawa, S.9
Nakano, T.10
Chien, M.11
Russo, J.J.12
Ju, J.13
Sheridan, R.14
Sander, C.15
Zavolan, M.16
Tuschl, T.17
-
2
-
-
36749037521
-
The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
-
DOI 10.1126/science.1146484
-
A.A. Aravin, G.J. Hannon, and J. Brennecke The PIWI-piRNA pathway provides an adaptive defense in the transposon arms race Science 318 November (5851) 2007 761 764 (Pubitemid 351411762)
-
(2007)
Science
, vol.318
, Issue.5851
, pp. 761-764
-
-
Aravin, A.A.1
Hannon, G.J.2
Brennecke, J.3
-
3
-
-
66349118913
-
Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution
-
10.1073/pnas.0900523106
-
R. Assis, and A.S. Kondrashov Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution Proc. Natl. Acad. Sci. U.S.A. 106 April (17) 2009 7079 7082 10.1073/pnas.0900523106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, Issue.APRIL 17
, pp. 7079-7082
-
-
Assis, R.1
Kondrashov, A.S.2
-
4
-
-
80053651587
-
GenBank
-
10.1093/nar/gks1195
-
D.A. Benson, M. Cavanaugh, K. Clark, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, and E.W. Sayers GenBank Nucleic Acids Res. 41 January (Database issue) 2013 D36 D42 10.1093/nar/gks1195
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.JANUARY DATABASE ISSUE
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
5
-
-
33947273235
-
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
-
DOI 10.1016/j.cell.2007.01.043, PII S0092867407002577
-
J. Brennecke, A.A. Aravin, A. Stark, M. Dus, M. Kellis, R. Sachidanandam, and G.J. Hannon Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila Cell 128 March (6) 2007 1089 1103 (Pubitemid 46427877)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
Sachidanandam, R.6
Hannon, G.J.7
-
6
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
10.1093/nar/gks1005
-
S.W. Burge, J. Daub, R. Eberhardt, J. Tate, L. Barquist, E.P. Nawrocki, S.R. Eddy, P.P. Gardner, and A. Bateman Rfam 11.0: 10 years of RNA families Nucleic Acids Res. 41 January (Database issue) 2013 D226 D232 10.1093/nar/gks1005
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.JANUARY DATABASE ISSUE
-
-
Burge, S.W.1
Daub, J.2
Eberhardt, R.3
Tate, J.4
Barquist, L.5
Nawrocki, E.P.6
Eddy, S.R.7
Gardner, P.P.8
Bateman, A.9
-
7
-
-
83055180736
-
The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements
-
10.1038/nature10547
-
S. De Fazio, N. Bartonicek, M. Di Giacomo, C. Abreu-Goodger, A. Sankar, C. Funaya, C. Antony, P.N. Moreira, A.J. Enright, and D. O'Carroll The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements Nature 480 October (7376) 2011 259 263 10.1038/nature10547
-
(2011)
Nature
, vol.480
, Issue.OCTOBER 7376
, pp. 259-263
-
-
De Fazio, S.1
Bartonicek, N.2
Di Giacomo, M.3
Abreu-Goodger, C.4
Sankar, A.5
Funaya, C.6
Antony, C.7
Moreira, P.N.8
Enright, A.J.9
O'Carroll, D.10
-
8
-
-
85170282443
-
A density-based algorithm for discovering clusters in large spatial databases with noise
-
M. Ester, H.P. Kriegel, J. Sander, and X. Xu A density-based algorithm for discovering clusters in large spatial databases with noise KDD 96 1996 226 231
-
(1996)
KDD
, vol.96
, pp. 226-231
-
-
Ester, M.1
Kriegel, H.P.2
Sander, J.3
Xu, X.4
-
9
-
-
33745336617
-
A germline-specific class of small RNAs binds mammalian Piwi proteins
-
DOI 10.1038/nature04917, PII NATURE04917
-
A. Girard, R. Sachidanandam, G.J. Hannon, and M.A. Carmell A germline-specific class of small RNAs binds mammalian PIWI proteins Nature 442 July (7099) 2006 199 202 (Pubitemid 44086566)
-
(2006)
Nature
, vol.442
, Issue.7099
, pp. 199-202
-
-
Girard, A.1
Sachidanandam, R.2
Hannon, G.J.3
Carmell, M.A.4
-
10
-
-
33745621037
-
A novel class of small RNAs in mouse spermatogenic cells
-
DOI 10.1101/gad.1434406
-
S.T. Grivna, E. Beyret, Z. Wang, and H. Lin A novel class of small RNAs in mouse spermatogenic cells Genes Dev. 20 13 2006 Jul 1 1709 1714 (Pubitemid 43992878)
-
(2006)
Genes and Development
, vol.20
, Issue.13
, pp. 1709-1714
-
-
Grivna, S.T.1
Beyret, E.2
Wang, Z.3
Lin, H.4
-
11
-
-
84868589615
-
Biology of PIWI-interacting RNAs: New insights into biogenesis and function inside and outside of germlines
-
10.1101/gad.203786.112
-
H. Ishizu, H. Siomi, and M.C. Siomi Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines Genes Dev. 26 November (21) 2012 2361 2373 10.1101/gad.203786.112
-
(2012)
Genes Dev.
, vol.26
, Issue.NOVEMBER 21
, pp. 2361-2373
-
-
Ishizu, H.1
Siomi, H.2
Siomi, M.C.3
-
12
-
-
17144417381
-
Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline
-
DOI 10.1093/nar/gki323
-
A.I. Kalmykova, M.S. Klenov, and V.A. Gvozdev Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline Nucleic Acids Res. 33 April (6) 2005 2052 2059 (Pubitemid 41748348)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.6
, pp. 2052-2059
-
-
Kalmykova, A.I.1
Klenov, M.S.2
Gvozdev, V.A.3
-
13
-
-
84868208368
-
Conserved functional characteristics of the PIWI family members in chicken germ cell lineage
-
10.1016/j.theriogenology.2012.07.019
-
T.H. Kim, T.W. Yun, D. Rengaraj, S.I. Lee, S.M. Lim, H.W. Seo, T.S. Park, and J.Y. Han Conserved functional characteristics of the PIWI family members in chicken germ cell lineage Theriogenology 78 December (9) 2012 1948 1959 10.1016/j.theriogenology.2012.07.019
-
(2012)
Theriogenology
, vol.78
, Issue.DECEMBER 9
, pp. 1948-1959
-
-
Kim, T.H.1
Yun, T.W.2
Rengaraj, D.3
Lee, S.I.4
Lim, S.M.5
Seo, H.W.6
Park, T.S.7
Han, J.Y.8
-
14
-
-
33746636025
-
Small RNAs just got bigger: Piwi-interacting RNAs (piRNAs) in mammalian testes
-
DOI 10.1101/gad.1456106
-
V.N. Kim Small RNAs just got bigger: PIWI-interacting RNAs (piRNAs) in mammalian testes Genes Dev. 20 August (15) 2006 1993 1997 (Pubitemid 44157450)
-
(2006)
Genes and Development
, vol.20
, Issue.15
, pp. 1993-1997
-
-
Kim, V.N.1
-
15
-
-
78651293534
-
MiRBase: Integrating microRNA annotation and deep-sequencing data
-
10.1093/nar/gkq1027
-
A. Kozomara, and S. Griffiths-Jones miRBase: integrating microRNA annotation and deep-sequencing data Nucleic Acids Res. 39 January (Database issue) 2011 D152 D157 10.1093/nar/gkq1027
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.JANUARY DATABASE ISSUE
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
16
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
10.1038/nmeth.1923
-
B. Langmead, and S.L. Salzberg Fast gapped-read alignment with Bowtie 2 Nat. Methods 9 March (4) 2012 357 359 10.1038/nmeth.1923
-
(2012)
Nat. Methods
, vol.9
, Issue.MARCH 4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
17
-
-
33746527679
-
Characterization of the piRNA complex from rat testes
-
DOI 10.1126/science.1130164
-
N.C. Lau, A.G. Seto, J. Kim, S. Kuramochi-Miyagawa, T. Nakano, D.P. Bartel, and R.E. Kingston Characterization of the piRNA complex from rat testes Science 313 5785 2006 Jul 21 363 367 (Pubitemid 44480963)
-
(2006)
Science
, vol.313
, Issue.5785
, pp. 363-367
-
-
Lau, N.C.1
Seto, A.G.2
Kim, J.3
Kuramochi-Miyagawa, S.4
Nakano, T.5
Bartel, D.P.6
Kingston, R.E.7
-
18
-
-
84859509738
-
Discovery of potential piRNAs from next generation sequences of the sexually mature porcine testes
-
10.1371/journal.pone.0034770
-
G. Liu, B. Lei, Y. Li, K. Tong, Y. Ding, L. Luo, X. Xia, S. Jiang, C. Deng, Y. Xiong, and F. Li Discovery of potential piRNAs from next generation sequences of the sexually mature porcine testes PLoS ONE 7 4 2012 e34770 10.1371/journal.pone.0034770
-
(2012)
PLoS ONE
, vol.7
, Issue.4
, pp. 34770
-
-
Liu, G.1
Lei, B.2
Li, Y.3
Tong, K.4
Ding, Y.5
Luo, L.6
Xia, X.7
Jiang, S.8
Deng, C.9
Xiong, Y.10
Li, F.11
-
19
-
-
78649491248
-
Identification of piRNAs in Hela cells by massive parallel sequencing
-
10.5483/BMBRep.2010.43.9.635
-
Y. Lu, C. Li, K. Zhang, H. Sun, D. Tao, Y. Liu, S. Zhang, and Y. Ma Identification of piRNAs in Hela cells by massive parallel sequencing BMB Rep. 43 September (9) 2010 635 641 10.5483/BMBRep.2010.43.9.635
-
(2010)
BMB Rep.
, vol.43
, Issue.SEPTEMBER 9
, pp. 635-641
-
-
Lu, Y.1
Li, C.2
Zhang, K.3
Sun, H.4
Tao, D.5
Liu, Y.6
Zhang, S.7
Ma, Y.8
-
20
-
-
84855505301
-
ProTRAC - A software for probabilistic piRNA cluster detection, visualization and analysis
-
10.1186/1471-2105-13-5
-
D. Rosenkranz, and H. Zischler proTRAC - a software for probabilistic piRNA cluster detection, visualization and analysis BMC Bioinform. 13 2012 5 10.1186/1471-2105-13-5
-
(2012)
BMC Bioinform.
, vol.13
, pp. 5
-
-
Rosenkranz, D.1
Zischler, H.2
-
21
-
-
38549141630
-
PiRNABank: A web resource on classified and clustered PIWI-interacting RNAs
-
S. Sai Lakshmi, and S. Agrawal piRNABank: a web resource on classified and clustered PIWI-interacting RNAs Nucleic Acids Res. 36 January (Database issue) 2008 D173 D177
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.JANUARY DATABASE ISSUE
-
-
Sai Lakshmi, S.1
Agrawal, S.2
-
22
-
-
84863273249
-
Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
-
10.4161/rna.18489
-
P. Shao, J.Y. Liao, D.G. Guan, J.H. Yang, L.L. Zheng, Q. Jing, H. Zhou, and L.H. Qu Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation RNA Biol. 9 February (2) 2012 212 227 10.4161/rna.18489
-
(2012)
RNA Biol.
, vol.9
, Issue.FEBRUARY 2
, pp. 212-227
-
-
Shao, P.1
Liao, J.Y.2
Guan, D.G.3
Yang, J.H.4
Zheng, L.L.5
Jing, Q.6
Zhou, H.7
Qu, L.H.8
-
23
-
-
70350238350
-
The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect
-
10.1146/annurev.cellbio.24.110707.175327
-
T. Thomson, and H. Lin The biogenesis and function of PIWI proteins and piRNAs: progress and prospect Annu. Rev. Cell Dev. Biol. 25 2009 355 376 10.1146/annurev.cellbio.24.110707.175327
-
(2009)
Annu. Rev. Cell Dev. Biol.
, vol.25
, pp. 355-376
-
-
Thomson, T.1
Lin, H.2
-
24
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-seq
-
10.1093/bioinformatics/btp120
-
C. Trapnell, L. Pachter, and S.L. Salzberg TopHat: discovering splice junctions with RNA-seq Bioinformatics 25 May (9) 2009 1105 10.1093/ bioinformatics/btp120
-
(2009)
Bioinformatics
, vol.25
, Issue.MAY 9
, pp. 1105
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
25
-
-
77952123055
-
Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
-
10.1038/nbt.1621
-
C. Trapnell, B.A. Williams, G. Pertea, A. Mortazavi, G. Kwan, M.J. van Baren, S.L. Salzberg, B.J. Wold, and L. Pachter Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation Nat. Biotechnol. 28 May (5) 2010 511 515 10.1038/nbt.1621
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.MAY 5
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
26
-
-
33745599586
-
Identification and characterization of two novel classes of small RNAs in the mouse germline: Retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
-
DOI 10.1101/gad.1425706
-
T. Watanabe, A. Takeda, T. Tsukiyama, K. Mise, T. Okuno, H. Sasaki, N. Minami, and H. Imai Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes Genes Dev. 20 July (13) 2006 1732 1743 (Pubitemid 43992882)
-
(2006)
Genes and Development
, vol.20
, Issue.13
, pp. 1732-1743
-
-
Watanabe, T.1
Takeda, A.2
Tsukiyama, T.3
Mise, K.4
Okuno, T.5
Sasaki, H.6
Minami, N.7
Imai, H.8
-
27
-
-
79952589852
-
A k-mer scheme to predict piRNAs and characterize locust piRNAs
-
10.1093/bioinformatics/btr016
-
Y. Zhang, X. Wang, and L. Kang A k-mer scheme to predict piRNAs and characterize locust piRNAs Bioinformatics 27 March (6) 2011 771 776 10.1093/bioinformatics/btr016
-
(2011)
Bioinformatics
, vol.27
, Issue.MARCH 6
, pp. 771-776
-
-
Zhang, Y.1
Wang, X.2
Kang, L.3
-
28
-
-
84878387068
-
Cloning, characterization and widespread expression analysis of testicular piRNA-like chicken RNAs
-
10.1007/s11033-012-2295-3
-
Y. Zhang, J. Li, R. Chen, A. Dai, D. Luan, T. Ma, D. Hua, G. Chen, and G. Chang Cloning, characterization and widespread expression analysis of testicular piRNA-like chicken RNAs Mol. Biol. Rep. 40 April (4) 2013 2799 2807 10.1007/s11033-012-2295-3
-
(2013)
Mol. Biol. Rep.
, vol.40
, Issue.APRIL 4
, pp. 2799-2807
-
-
Zhang, Y.1
Li, J.2
Chen, R.3
Dai, A.4
Luan, D.5
Ma, T.6
Hua, D.7
Chen, G.8
Chang, G.9
|