-
2
-
-
84255189090
-
The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks
-
Butcher SE, Pyle AM (2011) The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc Chem Res 44(12):1302-1311.
-
(2011)
Acc Chem Res
, vol.44
, Issue.12
, pp. 1302-1311
-
-
Butcher, S.E.1
Pyle, A.M.2
-
4
-
-
27744523656
-
The cytoplasm of living cells: A functional mixture of thousands of components
-
Sear RP (2005) The cytoplasm of living cells: A functional mixture of thousands of components. J Phys Condens Matter 17(45):S3587-S3595.
-
(2005)
J Phys Condens Matter
, vol.17
, Issue.45
-
-
Sear, R.P.1
-
5
-
-
56049095755
-
Monovalent and divalent promoted GAAA tetraloop-receptor tertiary interactions from freely diffusing single-molecule studies
-
Fiore JL, Hodak JH, Piestert O, Downey CD, Nesbitt DJ (2008) Monovalent and divalent promoted GAAA tetraloop-receptor tertiary interactions from freely diffusing single-molecule studies. Biophys J 95(8):3892-3905.
-
(2008)
Biophys J
, vol.95
, Issue.8
, pp. 3892-3905
-
-
Fiore, J.L.1
Hodak, J.H.2
Piestert, O.3
Downey, C.D.4
Nesbitt, D.J.5
-
6
-
-
33645226091
-
Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker
-
Downey CD, et al. (2006) Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker. Biochemistry 45(11):3664-3673.
-
(2006)
Biochemistry
, vol.45
, Issue.11
, pp. 3664-3673
-
-
Downey, C.D.1
-
7
-
-
16244363320
-
Metal ions and RNA folding: A highly charged topic with a dynamic future
-
Woodson SA (2005) Metal ions and RNA folding: A highly charged topic with a dynamic future. Curr Opin Chem Biol 9(2):104-109.
-
(2005)
Curr Opin Chem Biol
, vol.9
, Issue.2
, pp. 104-109
-
-
Woodson, S.A.1
-
8
-
-
41049090929
-
Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
-
Zhou HX, Rivas GN, Minton AP (2008) Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences. Annu Rev Biophys 37:375-397.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 375-397
-
-
Zhou, H.X.1
Rivas, G.N.2
Minton, A.P.3
-
9
-
-
34548722169
-
Macromolecular crowding induces a molten globule state in the C-terminal domain of histone H1
-
DOI 10.1529/biophysj.107.104513
-
Roque A, Ponte I, Suau P (2007) Macromolecular crowding induces a molten globule state in the C-terminal domain of histone H1. Biophys J 93(6):2170-2177. (Pubitemid 47437600)
-
(2007)
Biophysical Journal
, vol.93
, Issue.6
, pp. 2170-2177
-
-
Roque, A.1
Ponte, I.2
Suau, P.3
-
10
-
-
37649016316
-
Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin
-
Stagg L, Zhang SQ, Cheung MS, Wittung-Stafshede P (2007) Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin. Proc Natl Acad Sci USA 104(48):18976-18981.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.48
, pp. 18976-18981
-
-
Stagg, L.1
Zhang, S.Q.2
Cheung, M.S.3
Wittung-Stafshede, P.4
-
11
-
-
4544278751
-
Protein folding and binding in confined spaces and in crowded solutions
-
Zhou HX (2004) Protein folding and binding in confined spaces and in crowded solutions. J Mol Recognit 17(5):368-375.
-
(2004)
J Mol Recognit
, vol.17
, Issue.5
, pp. 368-375
-
-
Zhou, H.X.1
-
12
-
-
79961136147
-
Crowding promotes the switch from hairpin to pseudoknot conformation in human telomerase RNA
-
Denesyuk NA, Thirumalai D (2011) Crowding promotes the switch from hairpin to pseudoknot conformation in human telomerase RNA. J Am Chem Soc 133(31):11858-11861.
-
(2011)
J Am Chem Soc
, vol.133
, Issue.31
, pp. 11858-11861
-
-
Denesyuk, N.A.1
Thirumalai, D.2
-
13
-
-
77953900637
-
Molecular crowding stabilizes folded RNA structure by the excluded volume effect
-
Kilburn D, Roh JH, Guo L, Briber RM, Woodson SA (2010) Molecular crowding stabilizes folded RNA structure by the excluded volume effect. J Am Chem Soc 132(25):8690-8696.
-
(2010)
J Am Chem Soc
, vol.132
, Issue.25
, pp. 8690-8696
-
-
Kilburn, D.1
Roh, J.H.2
Guo, L.3
Briber, R.M.4
Woodson, S.A.5
-
14
-
-
79961215482
-
Separation of preferential interaction and excluded volume effects on DNA duplex and hairpin stability
-
Knowles DB, LaCroix AS, Deines NF, Shkel I, Record MT, Jr. (2011) Separation of preferential interaction and excluded volume effects on DNA duplex and hairpin stability. Proc Natl Acad Sci USA 108(31):12699-12704.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.31
, pp. 12699-12704
-
-
Knowles, D.B.1
LaCroix, A.S.2
Deines, N.F.3
Shkel, I.4
Record Jr., M.T.5
-
15
-
-
70450159038
-
Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes
-
Nakano S, Karimata HT, Kitagawa Y, Sugimoto N (2009) Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes. J Am Chem Soc 131(46):16881-16888.
-
(2009)
J Am Chem Soc
, vol.131
, Issue.46
, pp. 16881-16888
-
-
Nakano, S.1
Karimata, H.T.2
Kitagawa, Y.3
Sugimoto, N.4
-
16
-
-
34250167241
-
2+ Interactions
-
DOI 10.1016/j.jmb.2007.03.080, PII S0022283607004731
-
Lambert D, Draper DE (2007) Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions. J Mol Biol 370(5):993-1005. (Pubitemid 46899059)
-
(2007)
Journal of Molecular Biology
, vol.370
, Issue.5
, pp. 993-1005
-
-
Lambert, D.1
Draper, D.E.2
-
17
-
-
7744221005
-
The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability
-
DOI 10.1021/ja0463029
-
Nakano S, Karimata H, Ohmichi T, Kawakami J, Sugimoto N (2004) The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability. J Am Chem Soc 126(44):14330-14331. (Pubitemid 39463597)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.44
, pp. 14330-14331
-
-
Nakano, S.-I.1
Karimata, H.2
Ohmichi, T.3
Kawakami, J.4
Sugimoto, N.5
-
18
-
-
0003628866
-
Statistical mechanics of rigid spheres
-
Reiss H, Frisch HL, Lebowitz JL (1959) Statistical mechanics of rigid spheres. J Chem Phys 31(2):369-380.
-
(1959)
J Chem Phys
, vol.31
, Issue.2
, pp. 369-380
-
-
Reiss, H.1
Frisch, H.L.2
Lebowitz, J.L.3
-
20
-
-
33646475011
-
Macromolecular crowding
-
Minton AP (2006) Macromolecular crowding. Curr Biol 16(8):R269-R271.
-
(2006)
Curr Biol
, vol.16
, Issue.8
-
-
Minton, A.P.1
-
21
-
-
84866515544
-
The role of counterion valence and size in GAAA tetraloop-receptor docking/undocking kinetics
-
Fiore JL, Holmstrom ED, Fiegland LR, Hodak JH, Nesbitt DJ (2012) The role of counterion valence and size in GAAA tetraloop-receptor docking/undocking kinetics. J Mol Biol 423(2):198-216.
-
(2012)
J Mol Biol
, vol.423
, Issue.2
, pp. 198-216
-
-
Fiore, J.L.1
Holmstrom, E.D.2
Fiegland, L.R.3
Hodak, J.H.4
Nesbitt, D.J.5
-
23
-
-
84860768295
-
Thermodynamic origins of monovalent facilitated RNA folding
-
Holmstrom ED, Fiore JL, Nesbitt DJ (2012) Thermodynamic origins of monovalent facilitated RNA folding. Biochemistry 51(18):3732-3743.
-
(2012)
Biochemistry
, vol.51
, Issue.18
, pp. 3732-3743
-
-
Holmstrom, E.D.1
Fiore, J.L.2
Nesbitt, D.J.3
-
25
-
-
34547507851
-
Effects of crowding and confinement on the structures of the transition state ensemble in proteins
-
DOI 10.1021/jp068201y
-
Cheung MS, Thirumalai D (2007) Effects of crowding and confinement on the structures of the transition state ensemble in proteins. J Phys Chem B 111(28):8250-8257. (Pubitemid 47184401)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.28
, pp. 8250-8257
-
-
Cheung, M.S.1
Thirumalai, D.2
-
26
-
-
0000254227
-
A neutron-scattering study of poly(ethylene glycol) in electrolyte-solutions
-
Thiyagarajan P, Chaiko DJ, Hjelm RP (1995) A neutron-scattering study of poly(ethylene glycol) in electrolyte-solutions. Macromolecules 28(23):7730-7736.
-
(1995)
Macromolecules
, vol.28
, Issue.23
, pp. 7730-7736
-
-
Thiyagarajan, P.1
Chaiko, D.J.2
Hjelm, R.P.3
-
27
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate JH, et al. (1996) Crystal structure of a group I ribozyme domain: Principles of RNA packing. Science 273(5282):1678-1685. (Pubitemid 26317777)
-
(1996)
Science
, vol.273
, Issue.5282
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
28
-
-
64849085465
-
Enthalpy-driven RNA folding: Single-molecule thermodynamics of tetraloop-receptor tertiary interaction
-
Fiore JL, Kraemer B, Koberling F, Edmann R, Nesbitt DJ (2009) Enthalpy-driven RNA folding: Single-molecule thermodynamics of tetraloop-receptor tertiary interaction. Biochemistry 48(11):2550-2558.
-
(2009)
Biochemistry
, vol.48
, Issue.11
, pp. 2550-2558
-
-
Fiore, J.L.1
Kraemer, B.2
Koberling, F.3
Edmann, R.4
Nesbitt, D.J.5
-
29
-
-
77957916566
-
Solvent viscosity and friction in protein folding dynamics
-
Hagen SJ (2010) Solvent viscosity and friction in protein folding dynamics. Curr Protein Pept Sci 11(5):385-395.
-
(2010)
Curr Protein Pept Sci
, vol.11
, Issue.5
, pp. 385-395
-
-
Hagen, S.J.1
-
30
-
-
0035949430
-
Stabilization of proteins in confined spaces
-
Zhou HX, Dill KA (2001) Stabilization of proteins in confined spaces. Biochemistry 40(38):11289-11293.
-
(2001)
Biochemistry
, vol.40
, Issue.38
, pp. 11289-11293
-
-
Zhou, H.X.1
Dill, K.A.2
-
31
-
-
0020184671
-
How crowded is the cytoplasm?
-
Fulton AB (1982) How crowded is the cytoplasm? Cell 30(2):345-347.
-
(1982)
Cell
, vol.30
, Issue.2
, pp. 345-347
-
-
Fulton, A.B.1
-
32
-
-
0043009734
-
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
-
and erratum (2003) 10(10):872
-
Khvorova A, Lescoute A, Westhof E, Jayasena SD (2003) Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat Struct Biol 10(9):708-712, and erratum (2003) 10(10):872.
-
(2003)
Nat Struct Biol
, vol.10
, Issue.9
, pp. 708-712
-
-
Khvorova, A.1
Lescoute, A.2
Westhof, E.3
Jayasena, S.D.4
|