-
2
-
-
38849204944
-
Direct observation of hierarchical folding in single riboswitch aptamers
-
Greenleaf, W. J., Frieda, K. L., Foster, D. A. N., Woodside, M. T., and Block, S. M. (2008) Direct observation of hierarchical folding in single riboswitch aptamers. Science 319, 630-633.
-
(2008)
Science
, vol.319
, pp. 630-633
-
-
Greenleaf, W.J.1
Frieda, K.L.2
Foster, D.A.N.3
Woodside, M.T.4
Block, S.M.5
-
4
-
-
33744807172
-
The building blocks and motifs of RNA architecture
-
Leontis, N. B., Lescoute, A., and Westhof, E. (2006) The building blocks and motifs of RNA architecture. Curr. Opin. Struct. Biol. 16, 279-287.
-
(2006)
Curr. Opin. Struct. Biol
, vol.16
, pp. 279-287
-
-
Leontis, N.B.1
Lescoute, A.2
Westhof, E.3
-
5
-
-
33745951899
-
The UAA/GAN internal loop motif: A new RNA structural element that forms a cross-strand AAA stack and long-range tertiary interactions
-
Lee, J. C., Gutell, R. R., and Russell, R. (2006) The UAA/GAN internal loop motif: A new RNA structural element that forms a cross-strand AAA stack and long-range tertiary interactions. J. Mol. Biol. 360, 978-988.
-
(2006)
J. Mol. Biol
, vol.360
, pp. 978-988
-
-
Lee, J.C.1
Gutell, R.R.2
Russell, R.3
-
6
-
-
0035942248
-
RNA tertiary interactions in the large ribosomal subunit: The A-minor motif
-
Nissen, P., Ippolito, J. A., Ban, N., Moore, P. B., and Steitz, T. A. (2001) RNA tertiary interactions in the large ribosomal subunit: The A-minor motif. Proc. Natl. Acad. Sci. U.S.A. 98, 4899-4903.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 4899-4903
-
-
Nissen, P.1
Ippolito, J.A.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
7
-
-
0035073865
-
A universal mode of helix packing in RNA
-
Doherty, E. A., Batey, R. T., Masquida, B., and Doudna, J. A. (2001) A universal mode of helix packing in RNA. Nat. Struct. Biol. 8, 339-343.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 339-343
-
-
Doherty, E.A.1
Batey, R.T.2
Masquida, B.3
Doudna, J.A.4
-
8
-
-
0031588542
-
Remarkable morphological variability of a common RNA folding motif: The GNRA tetraloop-receptor interaction
-
Abramovitz, D. L., and Pyle, A. M. (1997) Remarkable morphological variability of a common RNA folding motif: The GNRA tetraloop-receptor interaction. J. Mol. Biol. 266, 493-506.
-
(1997)
J. Mol. Biol
, vol.266
, pp. 493-506
-
-
Abramovitz, D.L.1
Pyle, A.M.2
-
9
-
-
0035849534
-
Quantitative analysis of the isolated GAAA tetraloop/receptor interaction in solution: A site-directed spin labeling study
-
Qin, P. Z., Butcher, S. E., Feigon, J., and Hubbell, W. L. (2001) Quantitative analysis of the isolated GAAA tetraloop/receptor interaction in solution: A site-directed spin labeling study. Biochemistry 40, 6929-6936.
-
(2001)
Biochemistry
, vol.40
, pp. 6929-6936
-
-
Qin, P.Z.1
Butcher, S.E.2
Feigon, J.3
Hubbell, W.L.4
-
10
-
-
0031463994
-
Solution structure of a GAAA tetraloop receptor RNA
-
Butcher, S. E., Dieckmann, T., and Feigon, J. (1997) Solution structure of a GAAA tetraloop receptor RNA. EMBO J. 16, 7490- 7499.
-
(1997)
EMBO J
, vol.16
, pp. 7490-7499
-
-
Butcher, S.E.1
Dieckmann, T.2
Feigon, J.3
-
11
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate, J. H., Gooding, A. R., Podell, E., Zhou, K. H., Golden, B. L., Kundrot, C. E., Cech, T. R., and Doudna, J. A. (1996) Crystal structure of a group I ribozyme domain: Principles of RNA packing. Science 273, 1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.H.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
12
-
-
0029283999
-
GNRA tetraloops make a U-Turn
-
Jucker, F. M., and Pardi, A. (1995) GNRA tetraloops make a U-Turn. RNA 1, 219-222
-
(1995)
RNA
, vol.1
, pp. 219-222
-
-
Jucker, F.M.1
Pardi, A.2
-
13
-
-
22444437410
-
RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex
-
Davis, J. H., Tonelli, M., Scott, L. G., Jaeger, L., Williamson, J. R., and Butcher, S. E. (2005) RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex. J. Mol. Biol. 351, 371-382.
-
(2005)
J. Mol. Biol
, vol.351
, pp. 371-382
-
-
Davis, J.H.1
Tonelli, M.2
Scott, L.G.3
Jaeger, L.4
Williamson, J.R.5
Butcher, S.E.6
-
14
-
-
0034679465
-
Tecto-RNA: One-dimensional self-assembly through tertiary interactions
-
Jaeger, L., and Leontis, N. B. (2000) Tecto-RNA: One-dimensional self-assembly through tertiary interactions. Angew. Chem., Int. Ed. 39, 2521-2524.
-
(2000)
Angew. Chem., Int. Ed
, vol.39
, pp. 2521-2524
-
-
Jaeger, L.1
Leontis, N.B.2
-
15
-
-
33645226091
-
Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker
-
Downey, C. D., Fiore, J. L., Stoddard, C. D., Hodak, J. H., Nesbitt, D. J., and Pardi, A. (2006) Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker. Biochemistry 45, 3664- 3673.
-
(2006)
Biochemistry
, vol.45
, pp. 3664-3673
-
-
Downey, C.D.1
Fiore, J.L.2
Stoddard, C.D.3
Hodak, J.H.4
Nesbitt, D.J.5
Pardi, A.6
-
16
-
-
23044431628
-
Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET
-
Hodak, J. H., Downey, C. D., Fiore, J. L., Pardi, A., and Nesbitt, D. J. (2005) Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET. Proc. Natl. Acad. Sci. U.S.A. 102, 10505-10510.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 10505-10510
-
-
Hodak, J.H.1
Downey, C.D.2
Fiore, J.L.3
Pardi, A.4
Nesbitt, D.J.5
-
17
-
-
0037108183
-
The GAAA tetraloopreceptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain
-
Young, B. T., and Silverman, S. K. (2002) The GAAA tetraloopreceptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain. Biochemistry 41, 12271-12276.
-
(2002)
Biochemistry
, vol.41
, pp. 12271-12276
-
-
Young, B.T.1
Silverman, S.K.2
-
18
-
-
43249119217
-
Direct measurement of tertiary contact cooperativity in RNA folding
-
Sattin, B. D., Zhao, W., Travers, K., Chut, S., and Herschlag, D. (2008) Direct measurement of tertiary contact cooperativity in RNA folding. J. Am. Chem. Soc. 130, 6085-6087.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 6085-6087
-
-
Sattin, B.D.1
Zhao, W.2
Travers, K.3
Chut, S.4
Herschlag, D.5
-
19
-
-
0034681297
-
Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot
-
Nixon, P. L., and Giedroc, D. P. (2000) Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot. J. Mol. Biol. 296, 659-671.
-
(2000)
J. Mol. Biol
, vol.296
, pp. 659-671
-
-
Nixon, P.L.1
Giedroc, D.P.2
-
20
-
-
0035814826
-
Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: An isothermal titration calorimetric study
-
Hammann, C., Cooper, A., and Lilley, D. M. J. (2001) Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: An isothermal titration calorimetric study. Biochemistry 40, 1423-1429.
-
(2001)
Biochemistry
, vol.40
, pp. 1423-1429
-
-
Hammann, C.1
Cooper, A.2
Lilley, D.M.J.3
-
21
-
-
2442440301
-
Entropydriven folding of an RNA helical junction: An isothermal titration calorimetric analysis of the hammerhead ribozyme
-
Mikulecky, P. J., Takach, J. C., and Feig, A. L. (2004) Entropydriven folding of an RNA helical junction: An isothermal titration calorimetric analysis of the hammerhead ribozyme. Biochemistry 43, 5870-5881.
-
(2004)
Biochemistry
, vol.43
, pp. 5870-5881
-
-
Mikulecky, P.J.1
Takach, J.C.2
Feig, A.L.3
-
22
-
-
37549057040
-
Applications of isothermal titration calorimetry in RNA biochemistry and biophysics
-
Feig, A. L. (2007) Applications of isothermal titration calorimetry in RNA biochemistry and biophysics. Biopolymers 87, 293-301.
-
(2007)
Biopolymers
, vol.87
, pp. 293-301
-
-
Feig, A.L.1
-
23
-
-
84954358713
-
Thermodynamics and folding pathway of tetraloop receptor-mediated RNA helical packing
-
Vander Meulen, K. A., Davis, J. H., Foster, T. R., Record, T., and Butcher, S. E. (2008) Thermodynamics and folding pathway of tetraloop receptor-mediated RNA helical packing. J. Mol. Biol. 384, 702-717.
-
(2008)
J. Mol. Biol
, vol.384
, pp. 702-717
-
-
Vander Meulen, K.A.1
Davis, J.H.2
Foster, T.R.3
Record, T.4
Butcher, S.E.5
-
24
-
-
58849133396
-
Monitoring of an RNA multistep folding pathway by isothermal titration calorimetry
-
Reymond, C., Bisaillon, M., and Perreault, J.-P. (2009) Monitoring of an RNA multistep folding pathway by isothermal titration calorimetry. Biophys. J. 96, 132.
-
(2009)
Biophys. J
, vol.96
, pp. 132
-
-
Reymond, C.1
Bisaillon, M.2
Perreault, J.-P.3
-
25
-
-
0032508366
-
Thermodynamic stability of the P4-P6 domain RNA tertiary structure measured by temperature gradient gel electrophoresis
-
Szewczak, A. A., Podell, E. R., Bevilacqua, P. C., and Cech, T. R. (1998) Thermodynamic stability of the P4-P6 domain RNA tertiary structure measured by temperature gradient gel electrophoresis. Biochemistry 37, 11162-11170.
-
(1998)
Biochemistry
, vol.37
, pp. 11162-11170
-
-
Szewczak, A.A.1
Podell, E.R.2
Bevilacqua, P.C.3
Cech, T.R.4
-
26
-
-
0034711046
-
Helical junctions as determinants for RNA folding: Origin of tertiary structure stability of the hairpin ribozyme
-
Klostermeier, D., and Millar, D. P. (2000) Helical junctions as determinants for RNA folding: Origin of tertiary structure stability of the hairpin ribozyme. Biochemistry 39, 12970-12978.
-
(2000)
Biochemistry
, vol.39
, pp. 12970-12978
-
-
Klostermeier, D.1
Millar, D.P.2
-
27
-
-
50649115798
-
How RNA unfolds and refolds
-
Li, P. T. X., Vieregg, J., and Tinoco, I. (2008) How RNA unfolds and refolds. Annu. Rev. Biochem. 77, 77-100.
-
(2008)
Annu. Rev. Biochem
, vol.77
, pp. 77-100
-
-
Li, P.T.X.1
Vieregg, J.2
Tinoco, I.3
-
28
-
-
23744470902
-
Single-molecule RNA folding
-
Bokinsky, G., and Zhuang, X. W. (2005) Single-molecule RNA folding. Acc. Chem. Res. 38, 566-573.
-
(2005)
Acc. Chem. Res
, vol.38
, pp. 566-573
-
-
Bokinsky, G.1
Zhuang, X.W.2
-
29
-
-
0037165996
-
Correlating structural dynamics and function in single ribozyme molecules
-
Zhuang, X. W., Kim, H., Pereira, M. J. B., Babcock, H. P., Walter, N. G., and Chu, S. (2002) Correlating structural dynamics and function in single ribozyme molecules. Science 296, 1473-1476.
-
(2002)
Science
, vol.296
, pp. 1473-1476
-
-
Zhuang, X.W.1
Kim, H.2
Pereira, M.J.B.3
Babcock, H.P.4
Walter, N.G.5
Chu, S.6
-
30
-
-
0347004715
-
Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme
-
Xie, Z., Srividya, N., Sosnick, T. R., Pan, T., and Scherer, N. F. (2004) Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme. Proc. Natl. Acad. Sci. U.S.A. 101, 534-539.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 534-539
-
-
Xie, Z.1
Srividya, N.2
Sosnick, T.R.3
Pan, T.4
Scherer, N.F.5
-
31
-
-
0242500997
-
Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA
-
Bartley, L. E., Zhuang, X. W., Das, R., Chu, S., and Herschlag, D. (2003) Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA. J. Mol. Biol. 328, 1011-1026.
-
(2003)
J. Mol. Biol
, vol.328
, pp. 1011-1026
-
-
Bartley, L.E.1
Zhuang, X.W.2
Das, R.3
Chu, S.4
Herschlag, D.5
-
32
-
-
0346500500
-
Conformational flexibility of four-way junctions in RNA
-
Hohng, S., Wilson, T. J., Tan, E., Clegg, R. M., Lilley, D. M. J., and Ha, T. J. (2004) Conformational flexibility of four-way junctions in RNA. J. Mol. Biol. 336, 69-79.
-
(2004)
J. Mol. Biol
, vol.336
, pp. 69-79
-
-
Hohng, S.1
Wilson, T.J.2
Tan, E.3
Clegg, R.M.4
Lilley, D.M.J.5
Ha, T.J.6
-
33
-
-
54249159094
-
Single-Molecule Fluorescence Resonance Energy Transfer Assays Reveal Heterogeneous Folding Ensembles in a Simple RNA Stem-Loop
-
Gell, C., Sabir, T., Westwood, J., Rashid, A., Smith, D. A. M., Harris, S.-A., and Stockley, P. G. (2008) Single-Molecule Fluorescence Resonance Energy Transfer Assays Reveal Heterogeneous Folding Ensembles in a Simple RNA Stem-Loop. J. Mol. Biol. 384, 264-278.
-
(2008)
J. Mol. Biol
, vol.384
, pp. 264-278
-
-
Gell, C.1
Sabir, T.2
Westwood, J.3
Rashid, A.4
Smith, D.A.M.5
Harris, S.-A.6
Stockley, P.G.7
-
34
-
-
0013882603
-
Hydrogen ion buffers for biological research
-
Good, N. E., Winget, G. D., Winter, W., Connolly, T. N., Izawa, S., and Singh, R. M. M. (1966) Hydrogen ion buffers for biological research. Biochemistry 5, 467-477.
-
(1966)
Biochemistry
, vol.5
, pp. 467-477
-
-
Good, N.E.1
Winget, G.D.2
Winter, W.3
Connolly, T.N.4
Izawa, S.5
Singh, R.M.M.6
-
35
-
-
0033529972
-
Ligand-induced conformational changes observed in single RNA molecules
-
Ha, T., Zhuang, X. W., Kim, H. D., Orr, J. W., Williamson, J. R., and Chu, S. (1999) Ligand-induced conformational changes observed in single RNA molecules. Proc. Natl. Acad. Sci. U.S.A. 96, 9077-9082.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A
, vol.96
, pp. 9077-9082
-
-
Ha, T.1
Zhuang, X.W.2
Kim, H.D.3
Orr, J.W.4
Williamson, J.R.5
Chu, S.6
-
36
-
-
33750295496
-
Nonblinking and longlasting single-molecule fluorescence imaging
-
Rasnik, I., McKinney, S. A., and Ha, T. (2006) Nonblinking and longlasting single-molecule fluorescence imaging. Nat. Methods 3, 891-893.
-
(2006)
Nat. Methods
, vol.3
, pp. 891-893
-
-
Rasnik, I.1
McKinney, S.A.2
Ha, T.3
-
37
-
-
56049095755
-
Monovalent and divalent promoted GAAA-tetraloopreceptor tertiary interactions from freely diffusing single-molecule studies
-
Fiore, J. L., Hodak, J. H., Piestert, O., Downey, C. D., and Nesbitt, D. J. (2008) Monovalent and divalent promoted GAAA-tetraloopreceptor tertiary interactions from freely diffusing single-molecule studies. Biophys. J. 95, 3892-3905.
-
(2008)
Biophys. J
, vol.95
, pp. 3892-3905
-
-
Fiore, J.L.1
Hodak, J.H.2
Piestert, O.3
Downey, C.D.4
Nesbitt, D.J.5
-
38
-
-
18844463440
-
Thermodynamic and structural features of ultrastable DNA and RNA hairpins
-
Herna'ndez, B., Baumruk, V., Leulliot, N., Gouyette, C., Huynh- Dinh, T., and Ghomi, M. (2003) Thermodynamic and structural features of ultrastable DNA and RNA hairpins. J. Mol. Struct. 651- 653, 67-74.
-
(2003)
J. Mol. Struct
, vol.651
, Issue.653
, pp. 67-74
-
-
Herna'ndez, B.1
Baumruk, V.2
Leulliot, N.3
Gouyette, C.4
Huynh- Dinh, T.5
Ghomi, M.6
-
39
-
-
23144440350
-
DINAMelt web server for nucleic acid melting prediction
-
Markham, N. R., and Zuker, M. (2005) DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res. 33, W577- W581.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Markham, N.R.1
Zuker, M.2
-
40
-
-
34948825980
-
Fluorescence Properties and Photophysics of the Sulfoindocyanine Cy3 Linked Covalently to DNA
-
Sanborn, M. E., Connolly, B. K., Gurunathan, K., and Levitus, M. (2007) Fluorescence Properties and Photophysics of the Sulfoindocyanine Cy3 Linked Covalently to DNA. J. Phys. Chem. B 111, 11064-11074.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 11064-11074
-
-
Sanborn, M.E.1
Connolly, B.K.2
Gurunathan, K.3
Levitus, M.4
-
41
-
-
84981779372
-
Zwischenmolekulare Energiewanderung und Fluoreszenz.
-
Förster, T. (1948) Zwischenmolekulare Energiewanderung und Fluoreszenz. Ann. Phys. (Weinheim, Ger.) 2, 55-75.
-
(1948)
Ann. Phys. (Weinheim, Ger.)
, vol.2
, pp. 55-75
-
-
Förster, T.1
-
42
-
-
48249085467
-
Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids
-
Iqbal, A., Arslan, S., Okumus, B., Wilson, T. J., Giraud, G., Norman, D. G., Ha, T., and Lilley, D. M. J. (2008) Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids. Proc. Natl. Acad. Sci. U.S.A. 105, 11176-11181.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 11176-11181
-
-
Iqbal, A.1
Arslan, S.2
Okumus, B.3
Wilson, T.J.4
Giraud, G.5
Norman, D.G.6
Ha, T.7
Lilley, D.M.J.8
-
43
-
-
58149083620
-
A rugged free energy landscape separates multiple functional RNA folds throughout denaturation
-
doi: 10.1093/nar/gkn871
-
Ditzler, M. A., Rueda, D., Mo, J., Hakansson, K., and Walter, N. G. (2008) A rugged free energy landscape separates multiple functional RNA folds throughout denaturation. Nucleic Acids Res. doi: 10.1093/nar/gkn871.
-
(2008)
Nucleic Acids Res
-
-
Ditzler, M.A.1
Rueda, D.2
Mo, J.3
Hakansson, K.4
Walter, N.G.5
-
44
-
-
0033616580
-
Singlepair fluorescence resonance energy transfer on freely diffusing molecules: Observation of Forster distance dependence and subpopulations
-
Deniz, A. A., Dahan, M., Grunwell, J. R., Ha, T. J., Faulhaber, A. E., Chemla, D. S., Weiss, S., and Schultz, P. G. (1999) Singlepair fluorescence resonance energy transfer on freely diffusing molecules: Observation of Forster distance dependence and subpopulations. Proc. Natl. Acad. Sci. U.S.A. 96, 3670-3675.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A
, vol.96
, pp. 3670-3675
-
-
Deniz, A.A.1
Dahan, M.2
Grunwell, J.R.3
Ha, T.J.4
Faulhaber, A.E.5
Chemla, D.S.6
Weiss, S.7
Schultz, P.G.8
-
45
-
-
38649085954
-
Tertiary interactions determine the accuracy of RNA folding
-
Chauhan, S., and Woodson, S. A. (2008) Tertiary interactions determine the accuracy of RNA folding. J. Am. Chem. Soc. 130, 1296-1303.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 1296-1303
-
-
Chauhan, S.1
Woodson, S.A.2
-
46
-
-
0029100233
-
Predicting thermodynamic properties of RNA
-
Serra, M. J., Turner, D. H., Michael, L. J., and Ackers, G. K. (1995) Predicting thermodynamic properties of RNA. Methods Enzymol. 259, 242-261.
-
(1995)
Methods Enzymol
, vol.259
, pp. 242-261
-
-
Serra, M.J.1
Turner, D.H.2
Michael, L.J.3
Ackers, G.K.4
-
47
-
-
0033529336
-
Energetics and cooperativity of tertiary hydrogen bonds in RNA structure
-
Silverman, S. K., and Cech, T. R. (1999) Energetics and cooperativity of tertiary hydrogen bonds in RNA structure. Biochemistry 38, 8691-8702.
-
(1999)
Biochemistry
, vol.38
, pp. 8691-8702
-
-
Silverman, S.K.1
Cech, T.R.2
-
48
-
-
30744444833
-
Heat capacity changes associated with nucleic acid folding
-
Mikulecky, P. J., and Feig, A. L. (2006) Heat capacity changes associated with nucleic acid folding. Biopolymers 82, 38-58.
-
(2006)
Biopolymers
, vol.82
, pp. 38-58
-
-
Mikulecky, P.J.1
Feig, A.L.2
-
49
-
-
0017295709
-
Conformational-changes of transfer-RNA: Role of magnesium(II)
-
Stein, A., and Crothers, D. M. (1976) Conformational-changes of transfer-RNA: Role of magnesium(II). Biochemistry 15, 160-168.
-
(1976)
Biochemistry
, vol.15
, pp. 160-168
-
-
Stein, A.1
Crothers, D.M.2
-
50
-
-
0028102703
-
Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal-RNA
-
Lu, M., and Draper, D. E. (1994) Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal-RNA. J. Mol. Biol. 244, 572-585.
-
(1994)
J. Mol. Biol
, vol.244
, pp. 572-585
-
-
Lu, M.1
Draper, D.E.2
-
51
-
-
41649108293
-
Liganddependent folding of the three-way junction in the purine riboswitch
-
Stoddard, C. D., Gilbert, S. D., and Batey, R. T. (2008) Liganddependent folding of the three-way junction in the purine riboswitch. RNA 14, 675-684.
-
(2008)
RNA 14
, pp. 675-684
-
-
Stoddard, C.D.1
Gilbert, S.D.2
Batey, R.T.3
-
52
-
-
0026593806
-
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
-
Antao, V. P., and Tinoco, I. (1992) Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops. Nucleic Acids Res. 20, 819-824.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 819-824
-
-
Antao, V.P.1
Tinoco, I.2
-
53
-
-
0028824549
-
Thermodynamic and activation parameters for binding of a pyrenelabeled substrate by the Tetrahymena ribozyme: Docking is not diffusion-controlled and is driven by a favorable entropy
-
Li, Y., Bevilacqua, P. C., Mathews, D., and Turner, D. H. (1995) Thermodynamic and activation parameters for binding of a pyrenelabeled substrate by the Tetrahymena ribozyme: Docking is not diffusion-controlled and is driven by a favorable entropy. Biochemistry 34, 14394-14399.
-
(1995)
Biochemistry
, vol.34
, pp. 14394-14399
-
-
Li, Y.1
Bevilacqua, P.C.2
Mathews, D.3
Turner, D.H.4
-
54
-
-
0029746472
-
Isolation of a local tertiary folding transition in the context of a globally folded RNA
-
Narlikar, G. J., and Herschlag, D. (1996) Isolation of a local tertiary folding transition in the context of a globally folded RNA. Nat. Struct. Biol. 3, 701-710.
-
(1996)
Nat. Struct. Biol
, vol.3
, pp. 701-710
-
-
Narlikar, G.J.1
Herschlag, D.2
-
55
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
Rupert, P. B., and Ferre-D'Amare, A. R. (2001) Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature 410, 780-786.
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferre-D'Amare, A.R.2
-
56
-
-
0031731420
-
A minor groove RNA triple helix within the catalytic core of a group I intron
-
Szewczak, A. A., Ortoleva-Donnelly, L., Ryder, S. P., Moncoeur, E., and Strobel, S. A. (1998) A minor groove RNA triple helix within the catalytic core of a group I intron. Nat. Struct. Biol. 5, 1037-1042.
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 1037-1042
-
-
Szewczak, A.A.1
Ortoleva-Donnelly, L.2
Ryder, S.P.3
Moncoeur, E.4
Strobel, S.A.5
-
57
-
-
0028063567
-
3-Dimensional structure of a hammerhead ribozyme
-
Pley, H. W., Flaherty, K. M., and McKay, D. B. (1994) 3-Dimensional structure of a hammerhead ribozyme. Nature 372, 68-74.
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
58
-
-
0029073091
-
The crystal structure of an All-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
Scott, W. G., Finch, J. T., and Klug, A. (1995) The crystal structure of an All-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell 81, 991-1002.
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
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