메뉴 건너뛰기




Volumn 543, Issue , 2014, Pages 235-259

In vivo quantitative proteomics for the study of oncometabolism

Author keywords

Label free; Mass spectrometry; Metabolism; Proteomics; SILAC; Tumor tissue

Indexed keywords

PROTEOME; TUMOR PROTEIN;

EID: 84902179895     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-801329-8.00012-X     Document Type: Chapter
Times cited : (5)

References (32)
  • 1
  • 2
    • 84864292789 scopus 로고    scopus 로고
    • Rocking cell metabolism: Revised functions of the key glycolytic regulator PKM2 in cancer
    • B. Chaneton, and E. Gottlieb Rocking cell metabolism: Revised functions of the key glycolytic regulator PKM2 in cancer Trends in Biochemical Sciences 37 2012 309 316
    • (2012) Trends in Biochemical Sciences , vol.37 , pp. 309-316
    • Chaneton, B.1    Gottlieb, E.2
  • 4
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • J. Cox, and M. Mann MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nature Biotechnology 26 2008 1367 1372
    • (2008) Nature Biotechnology , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 5
    • 67649400942 scopus 로고    scopus 로고
    • A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
    • J. Cox, I. Matic, M. Hilger, N. Nagaraj, M. Selbach, and J.V. Olsen et al. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics Nature Protocols 4 2009 698 705
    • (2009) Nature Protocols , vol.4 , pp. 698-705
    • Cox, J.1    Matic, I.2    Hilger, M.3    Nagaraj, N.4    Selbach, M.5    Olsen, J.V.6
  • 7
    • 70350728803 scopus 로고    scopus 로고
    • MYC-induced cancer cell energy metabolism and therapeutic opportunities
    • C.V. Dang, A. Le, and P. Gao MYC-induced cancer cell energy metabolism and therapeutic opportunities Clinical Cancer Research 15 2009 6479 6483
    • (2009) Clinical Cancer Research , vol.15 , pp. 6479-6483
    • Dang, C.V.1    Le, A.2    Gao, P.3
  • 8
    • 84861157792 scopus 로고    scopus 로고
    • Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles
    • S.J. Deeb, R.C. D'Souza, J. Cox, M. Schmidt-Supprian, and M. Mann Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles Molecular & Cellular Proteomics 11 2012 77 89
    • (2012) Molecular & Cellular Proteomics , vol.11 , pp. 77-89
    • Deeb, S.J.1    D'Souza, R.C.2    Cox, J.3    Schmidt-Supprian, M.4    Mann, M.5
  • 9
    • 0029101515 scopus 로고
    • Hypoxic regulation of lactate dehydrogenase A. Interaction between hypoxia-inducible factor 1 and cAMP response elements
    • J.D. Firth, B.L. Ebert, and P.J. Ratcliffe Hypoxic regulation of lactate dehydrogenase A. Interaction between hypoxia-inducible factor 1 and cAMP response elements The Journal of Biological Chemistry 270 1995 21021 21027
    • (1995) The Journal of Biological Chemistry , vol.270 , pp. 21021-21027
    • Firth, J.D.1    Ebert, B.L.2    Ratcliffe, P.J.3
  • 11
    • 84860508745 scopus 로고    scopus 로고
    • Proteomic portrait of human breast cancer progression identifies novel prognostic markers
    • T. Geiger, S.F. Madden, W.M. Gallagher, J. Cox, and M. Mann Proteomic portrait of human breast cancer progression identifies novel prognostic markers Cancer Research 72 2012 2428 2439
    • (2012) Cancer Research , vol.72 , pp. 2428-2439
    • Geiger, T.1    Madden, S.F.2    Gallagher, W.M.3    Cox, J.4    Mann, M.5
  • 12
    • 79551663189 scopus 로고    scopus 로고
    • Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
    • T. Geiger, J.R. Wisniewski, J. Cox, S. Zanivan, M. Kruger, and Y. Ishihama et al. Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics Nature Protocols 6 2011 147 157
    • (2011) Nature Protocols , vol.6 , pp. 147-157
    • Geiger, T.1    Wisniewski, J.R.2    Cox, J.3    Zanivan, S.4    Kruger, M.5    Ishihama, Y.6
  • 13
    • 79952284127 scopus 로고    scopus 로고
    • Hallmarks of cancer: The next generation
    • D. Hanahan, and R.A. Weinberg Hallmarks of cancer: The next generation Cell 144 2011 646 674
    • (2011) Cell , vol.144 , pp. 646-674
    • Hanahan, D.1    Weinberg, R.A.2
  • 15
    • 84867527044 scopus 로고    scopus 로고
    • Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer
    • L. Jerby, L. Wolf, C. Denkert, G.Y. Stein, M. Hilvo, and M. Oresic et al. Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer Cancer Research 72 2012 5712 5720
    • (2012) Cancer Research , vol.72 , pp. 5712-5720
    • Jerby, L.1    Wolf, L.2    Denkert, C.3    Stein, G.Y.4    Hilvo, M.5    Oresic, M.6
  • 16
    • 33644614520 scopus 로고    scopus 로고
    • HIF-1-mediated expression of pyruvate dehydrogenase kinase: A metabolic switch required for cellular adaptation to hypoxia
    • J.W. Kim, I. Tchernyshyov, G.L. Semenza, and C.V. Dang HIF-1-mediated expression of pyruvate dehydrogenase kinase: A metabolic switch required for cellular adaptation to hypoxia Cell Metabolism 3 2006 177 185
    • (2006) Cell Metabolism , vol.3 , pp. 177-185
    • Kim, J.W.1    Tchernyshyov, I.2    Semenza, G.L.3    Dang, C.V.4
  • 18
    • 76949097340 scopus 로고    scopus 로고
    • Quantitative proteomics reveals subset-specific viral recognition in dendritic cells
    • C.A. Luber, J. Cox, H. Lauterbach, B. Fancke, M. Selbach, and J. Tschopp et al. Quantitative proteomics reveals subset-specific viral recognition in dendritic cells Immunity 32 2010 279 289
    • (2010) Immunity , vol.32 , pp. 279-289
    • Luber, C.A.1    Cox, J.2    Lauterbach, H.3    Fancke, B.4    Selbach, M.5    Tschopp, J.6
  • 19
    • 50849107639 scopus 로고    scopus 로고
    • Signal transduction in transgenic mouse models of human breast cancer - Implications for human breast cancer
    • R. Marcotte, and W.J. Muller Signal transduction in transgenic mouse models of human breast cancer - Implications for human breast cancer Journal of Mammary Gland Biology and Neoplasia 13 2008 323 335
    • (2008) Journal of Mammary Gland Biology and Neoplasia , vol.13 , pp. 323-335
    • Marcotte, R.1    Muller, W.J.2
  • 20
    • 84862016091 scopus 로고    scopus 로고
    • Analysis of tumor metabolism reveals mitochondrial glucose oxidation in genetically diverse human glioblastomas in the mouse brain in vivo
    • I. Marin-Valencia, C. Yang, T. Mashimo, S. Cho, H. Baek, and X.L. Yang et al. Analysis of tumor metabolism reveals mitochondrial glucose oxidation in genetically diverse human glioblastomas in the mouse brain in vivo Cell Metabolism 15 2012 827 837
    • (2012) Cell Metabolism , vol.15 , pp. 827-837
    • Marin-Valencia, I.1    Yang, C.2    Mashimo, T.3    Cho, S.4    Baek, H.5    Yang, X.L.6
  • 21
    • 84863393526 scopus 로고    scopus 로고
    • Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes
    • O111 013698-1-O111 013698-11
    • A. Michalski, E. Damoc, O. Lange, E. Denisov, D. Nolting, and M. Muller et al. Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes Molecular & Cellular Proteomics 11 3 2012 O111 013698-1-O111 013698-11
    • (2012) Molecular & Cellular Proteomics , vol.11 , Issue.3
    • Michalski, A.1    Damoc, E.2    Lange, O.3    Denisov, E.4    Nolting, D.5    Muller, M.6
  • 22
    • 79961014854 scopus 로고    scopus 로고
    • Large-scale phosphosite quantification in tissues by a spike-in SILAC method
    • M. Monetti, N. Nagaraj, K. Sharma, and M. Mann Large-scale phosphosite quantification in tissues by a spike-in SILAC method Nature Methods 8 2011 655 658
    • (2011) Nature Methods , vol.8 , pp. 655-658
    • Monetti, M.1    Nagaraj, N.2    Sharma, K.3    Mann, M.4
  • 23
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • S.E. Ong, B. Blagoev, I. Kratchmarova, D.B. Kristensen, H. Steen, and A. Pandey et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics Molecular & Cellular Proteomics 1 2002 376 386
    • (2002) Molecular & Cellular Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6
  • 24
    • 34548183872 scopus 로고    scopus 로고
    • Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
    • J. Rappsilber, M. Mann, and Y. Ishihama Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips Nature Protocols 2 2007 1896 1906
    • (2007) Nature Protocols , vol.2 , pp. 1896-1906
    • Rappsilber, J.1    Mann, M.2    Ishihama, Y.3
  • 25
    • 84877590257 scopus 로고    scopus 로고
    • Identification of disease specific pathways using in vivo SILAC proteomics in dystrophin deficient mdx mouse
    • S. Rayavarapu, W. Coley, E. Cakir, V. Jahnke, S. Takeda, and Y. Aoki et al. Identification of disease specific pathways using in vivo SILAC proteomics in dystrophin deficient mdx mouse Molecular & Cellular Proteomics 12 2013 1061 1073
    • (2013) Molecular & Cellular Proteomics , vol.12 , pp. 1061-1073
    • Rayavarapu, S.1    Coley, W.2    Cakir, E.3    Jahnke, V.4    Takeda, S.5    Aoki, Y.6
  • 26
    • 76349095132 scopus 로고    scopus 로고
    • Defining the role of hypoxia-inducible factor 1 in cancer biology and therapeutics
    • G.L. Semenza Defining the role of hypoxia-inducible factor 1 in cancer biology and therapeutics Oncogene 29 2010 625 634
    • (2010) Oncogene , vol.29 , pp. 625-634
    • Semenza, G.L.1
  • 28
    • 77149120797 scopus 로고    scopus 로고
    • Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux
    • Q. Wang, Y. Zhang, C. Yang, H. Xiong, Y. Lin, and J. Yao et al. Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux Science 327 2010 1004 1007
    • (2010) Science , vol.327 , pp. 1004-1007
    • Wang, Q.1    Zhang, Y.2    Yang, C.3    Xiong, H.4    Lin, Y.5    Yao, J.6
  • 29
    • 71549117585 scopus 로고    scopus 로고
    • Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome
    • J.R. Wisniewski, A. Zougman, and M. Mann Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome Journal of Proteome Research 8 2009 5674 5678
    • (2009) Journal of Proteome Research , vol.8 , pp. 5674-5678
    • Wisniewski, J.R.1    Zougman, A.2    Mann, M.3
  • 30
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • J.R. Wisniewski, A. Zougman, N. Nagaraj, and M. Mann Universal sample preparation method for proteome analysis Nature Methods 6 2009 359 362
    • (2009) Nature Methods , vol.6 , pp. 359-362
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 31
    • 58149136865 scopus 로고    scopus 로고
    • Roles of p53, MYC and HIF-1 in regulating glycolysis - The seventh hallmark of cancer
    • S.J. Yeung, J. Pan, and M.H. Lee Roles of p53, MYC and HIF-1 in regulating glycolysis - The seventh hallmark of cancer Cellular and Molecular Life Sciences 65 2008 3981 3999
    • (2008) Cellular and Molecular Life Sciences , vol.65 , pp. 3981-3999
    • Yeung, S.J.1    Pan, J.2    Lee, M.H.3
  • 32
    • 84874259874 scopus 로고    scopus 로고
    • In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis
    • S. Zanivan, A. Meves, K. Behrendt, E.M. Schoof, L.J. Neilson, and J. Cox et al. In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis Cell Reports 3 2013 552 566
    • (2013) Cell Reports , vol.3 , pp. 552-566
    • Zanivan, S.1    Meves, A.2    Behrendt, K.3    Schoof, E.M.4    Neilson, L.J.5    Cox, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.