Genetic characterization of swine influenza viruses isolated in Japan between 2009 and 2012

Microbiology and Immunology

Volumn 56, Issue 11, 2012, Pages 792-803

  Matsuu, Aya ^a,b   Uchida, Yuko ^a,b   Takemae, Nobuhiro ^a   Mawatari, Takahiro ^c   Kasai Yoneyama, Shuji ^d   Kasai, Tomoe ^e   Nakamura, Ryoko ^f   Eto, Mariko ^g   Saito, Takehiko ^a,b  

^a NATIONAL INSTITUTE OF ANIMAL HEALTH   (Japan)

^b Thailand Japan Zoonotic Diseases Collaboration Center   (Thailand)

^c Yamagata Prefectural Central Livestock Health and Sanitation Office   (Japan)

^d Central Animal Hygiene Service Center of Tochigi Prefecture   (Japan)

^e Osaka Prefectural Livestock Hygiene Service Center   (Japan)

^f Mie Chuoh Livestock Hygiene Service Center   (Japan)

^g NATIONAL VETERINARY ASSAY LABORATORY   (Japan)

Author keywords

A(H1N1)pdm virus; Swine influenza virus

Indexed keywords

CONTROLLED STUDY; GENE SEQUENCE; GENETIC REASSORTMENT; GENETIC SCREENING; INFLUENZA VIRUS A H1N2; INFLUENZA VIRUS A H3N2; JAPAN; NONHUMAN; NOSE SMEAR; NOTE; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; SWINE; SWINE INFLUENZA VIRUS; VIRAL GENETICS; VIRUS ISOLATION; VIRUS STRAIN;

ANIMALS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA A VIRUS, H1N2 SUBTYPE; INFLUENZA A VIRUS, H3N2 SUBTYPE; JAPAN; MOLECULAR SEQUENCE DATA; ORTHOMYXOVIRIDAE INFECTIONS; REASSORTANT VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES;

ANIMALIA; SIMIAN IMMUNODEFICIENCY VIRUS; SUIDAE; SUS SCROFA DOMESTICA; SWINE INFLUENZA VIRUS;

EID: 84867928713     PISSN: 03855600     EISSN: 13480421     Source Type: Journal    
DOI: 10.1111/j.1348-0421.2012.00501.x     Document Type: Note

References (34)

1. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., Kawaoka, Y. (1992) Evolution and ecology of influenza A viruses. Microbiol Rev 56: 152-79.
2. Gorman O.T., Bean W.J., Kawaoka Y., Donatelli I., Guo Y.J., Webster R.G. (1991) Evolution of influenza A virus nucleoprotein genes: implications for the origins of H1N1 human and classical swine viruses. J Virol 65: 3704-14.
3. Gorman O.T., Bean W.J., Kawaoka Y., Webster R.G. (1990) Evolution of the nucleoprotein gene of influenza A virus. J Virol 64: 1487-97.
4. Ma W., Lager K.M., Vincent A.L., Janke B.H., Gramer M.R., Richt J.A. (2009) The role of swine in the generation of novel influenza viruses. Zoonoses Public Health 56: 326-37.
5. Reid A.H., Fanning T.G., Hultin J.V., Taubenberger J.K. (1999) Origin and evolution of the 1918 "Spanish" influenza virus hemagglutinin gene. Proc Natl Acad Sci USA 96: 1651-6.
6. Chambers T.M., Hinshaw V.S., Kawaoka Y., Easterday B.C., Webster R.G. (1991) Influenza viral infection of swine in the United States 1988-1989. Arch Virol 116: 261-5.
7. Pensaert M., Ottis K., Vandeputte J., Kaplan M.M., Bachmann P.A. (1981) Evidence for the natural transmission of influenza A virus from wild ducts to swine and its potential importance for man. Bull World Health Organ 59: 75-8.
8. Kundin W.D. (1970) Hong Kong A-2 influenza virus infection among swine during a human epidemic in Taiwan. Nature 228: 857.
9. Ma W., Gramer M., Rossow K., Yoon K.J. (2006) Isolation and genetic characterization of new reassortant H3N1 swine influenza virus from pigs in the midwestern United States. J Virol 80: 5092-6.
10. Lekcharoensuk P., Lager K.M., Vemulapalli R., Woodruff M., Vincent A.L., Richt J.A. (2006) Novel swine influenza virus subtype H3N1, United States. Emerg Infects Diseases 12: 787-94.
11. Karasin A.I., Olsen C.W., Anderson G.A. (2000) Genetic characterization of an H1N2 influenza virus isolated from a pig in Indiana. J Clin Microbiol 38: 2453-6.
12. Webby R.J., Rossow K., Erickson G., Sims Y., Webster R. (2004) Multiple lineages of antigenically and genetically diverse influenza A virus co-circulate in the United States swine population. Virus Res 103: 67-73.
13. Olsen C.W. (2002) The emergence of novel swine influenza viruses in North America. Virus Res 85: 199-210.
14. Vincent A.L., Ma W., Lager K.M., Janke B.H., Richt J.A. (2008) Swine influenza viruses a North American perspective. Adv Virus Res 72: 127-54.
15. Brockwell-Staats C., Webster R.G., Webby R.J. (2009) Diversity of influenza viruses in swine and the emergence of a novel human pandemic influenza A (H1N1). Influenza Other Respir Viruses 3: 207-13.
16. Dawood F.S., Jain S., Finelli L., Shaw M.W., Lindstrom S., Garten R.J., Gubareva L.V., Xu X., Bridges C.B., Uyeki T.M. (2009) Emergence of a novel swine-origin influenza A (H1N1) virus in humans. New Engl J Med 360: 2605-15.
17. Howden K.J., Brockhoff E.J., Caya F.D., Mcleod L.J., Lavoie M., Ing J.D., Bystrom J.M., Alexandersen S., Pasick J.M., Berhane Y., Morrison M.E., Keenliside J.M., Laurendeau S., Rohonczy E.B. (2009) An investigation into human pandemic influenza virus (H1N1) 2009 on an Alberta swine farm. Can Vet J 50: 1153-61.
18. Weingartl H.M., Berhane Y., Hisanaga T., Neufeld J., Kehler H., Emburry-Hyatt C., Hooper-Mcgreevy K., Kasloff S., Dalman B., Bystrom J., Alexandersen S., Li Y., Pasick J. (2010) Genetic and pathobiologic characterization of pandemic H1N1 2009 influenza viruses from a naturally infected swine herd. J Virol 84: 2245-56.
19. Deng Y.M., Iannello P., Smith I., Watson J., Barr I.G., Daniels P., Komadina N., Harrower B., Wong F.Y. (2012) Transmission of influenza A(H1N1) 2009 pandemic viruses in Australian swine. Influenza Other Respir Viruses
20. Holyoake P.K., Kirkland P.D., Davis R.J., Arzey K.E., Watson J., Lunt R.A., Wang J., Wong F., Moloney B.J., Dunn S.E. (2011) The first identified case of pandemic H1N1 influenza in pigs in Australia. Aust Vet J 89: 427-31.
21. Njabo K.Y., Fuller T.L., Chasar A., Pollinger J.P., Cattoli G., Terregino C., Monne I., Reynes J.M., Njouom R., Smith T.B. (2012) Pandemic A/H1N1/2009 influenza virus in Swine, Cameroon, 2010. Vet Microbiol 156: 189-92.
22. Trevennec K., Leger L., Lyazrhi F., Baudon E., Cheung C.Y., Roger F., Sriyal Peiris J.M., Garcia J.M. (2011) Transmission of pandemic influenza H1N1 (2009) in Vietnamese swine in 2009-2010. Influenza Other Respir Viruses
23. Ito T., Kawaoka Y., Vines A., Ishikawa H., Asai T., Kida H. (1998) Continued circulation of reassortant H1N2 influenza viruses in pigs in Japan. Arch Virol 143: 1773-82.
24. Saito T., Suzuki H., Maeda K., Inai K., Takemae N., Uchida Y., Tsunemitsu H. (2008) Molecular characterization of an H1N2 swine influenza virus isolated in Miyazaki, Japan, in 2006. J Vet Med Sci 70: 423-7.
25. Yoneyama S., Hayashi T., Kojima H., Usami Y., Kubo M., Takemae N., Uchida Y., Saito T. (2010) Occurrence of a pig respiratory disease associated with swine influenza A (H1N2) virus in Tochigi Prefecture, Japan. J Vet Med Sci 72: 481-8.
26. Goto H., Takai M., Iguchi H., Benkele W., Ohta C., Yamamoto Y., Kida H., Noro S., Sakurada N. (1992) Antibody responses of swine to type A influenza viruses in the most recent several years. J Vet Med Sci 54: 235-41.
27. Smith G.J., Vijaykrishna D., Bahl J., Lycett S.J., Worobey M., Pybus O.G., Ma S.K., Cheung C.L., Raghwani J., Bhatt S., Peiris J.S., Guan Y., Rambaut A. (2009) Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459: 1122-5.
28. Christman M.C., Kedwaii A., Xu J., Donis R.O., Lu G. (2011) Pandemic (H1N1) 2009 virus revisited: an evolutionary retrospective. Infect Genet Evol 11: 803-11.
29. Tremblay D., Allard V., Doyon J.F., Bellehumeur C., Spearman J.G., Harel J., Gagnon C.A. (2011) Emergence of a new swine H3N2 and pandemic (H1N1) 2009 influenza A virus reassortant in two Canadian animal populations, mink and swine. J Clin Microbiol 49: 4386-90.
30. Liu Q., Ma J., Liu H., Qi W., Anderson J., Henry S.C., Hesse R.A., Richt J.A., Ma W. (2012) Emergence of novel reassortant H3N2 swine influenza viruses with the 2009 pandemic H1N1 genes in the United States. Arch Virol 157: 555-62.
31. Moreno A., Di Trani L., Faccini S., Vaccari G., Nigrelli D., Boniotti M.B., Falcone E., Boni A., Chiapponi C., Sozzi E., Cordioli P. (2011) Novel H1N2 swine influenza reassortant strain in pigs derived from the pandemic H1N1/2009 virus. Vet Microbiol 149: 472-7.
32. Fan X., Zhu H., Zhou B., Smith D.K., Chen X., Lam T.T., Poon L.L., Peiris M., Guan Y. (2012) Emergence and dissemination of a swine H3N2 reassortant influenza virus with 2009 pandemic H1N1 genes in pigs in China. J Virol 86 2375-8.
33. Webby R.J., Swenson S.L., Krauss S.L., Gerrish P.J., Goyal S.M., Webster R.G. (2000) Evolution of swine H3N2 influenza viruses in the United States. J Virol 74: 8243-51.
34. Nfon C.K., Berhane Y., Hisanaga T., Zhang S., Handel K., Kehler H., Labrecque O., Lewis N.S., Vincent A.L., Copps J., Alexandersen S., Pasick J. (2011) Characterization of H1N1 swine influenza viruses circulating in Canadian pigs in 2009. J Virol 85: 8667-79.