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Volumn , Issue , 2011, Pages 87-93

CONDEX: COpy Number Detection in EXome sequences

Author keywords

[No Author keywords available]

Indexed keywords

CODING SEQUENCES; COPY NUMBER; HETEROZYGOSITY; MARKOV MODEL; MULTIPLE REGIONS; STANDARD ANALYSIS; TRAINING DATA;

EID: 84855982885     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBMW.2011.6112359     Document Type: Conference Paper
Times cited : (6)

References (23)
  • 1
    • 73349110071 scopus 로고    scopus 로고
    • Exome sequencing identifies the cause of a mendelian disorder
    • Jan
    • S. B. Ng, et al., "Exome sequencing identifies the cause of a mendelian disorder," Nat Genet, vol. 42, pp. 30-5, Jan 2010.
    • (2010) Nat Genet , vol.42 , pp. 30-35
    • Ng, S.B.1
  • 2
    • 58149328823 scopus 로고    scopus 로고
    • Extending genome-wide association studies to copy-number variation
    • Oct 15
    • S. A. McCarroll, "Extending genome-wide association studies to copy-number variation," Hum Mol Genet, vol. 17, pp. R135-42, Oct 15 2008.
    • (2008) Hum Mol Genet , vol.17
    • McCarroll, S.A.1
  • 3
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • Jun 30
    • "Integrated genomic analyses of ovarian carcinoma," Nature, vol. 474, pp. 609-15, Jun 30 2011.
    • (2011) Nature , vol.474 , pp. 609-615
  • 4
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • T. C. G. A. R. N. TCGA, Oct 23
    • T. C. G. A. R. N. TCGA, "Comprehensive genomic characterization defines human glioblastoma genes and core pathways," Nature, vol. 455, pp. 1061-8, Oct 23 2008.
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 5
    • 77950405093 scopus 로고    scopus 로고
    • Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
    • Apr 1
    • N. Craddock, et al., "Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls," Nature, vol. 464, pp. 713-20, Apr 1 2010.
    • (2010) Nature , vol.464 , pp. 713-720
    • Craddock, N.1
  • 6
    • 77954657070 scopus 로고    scopus 로고
    • Functional impact of global rare copy number variation in autism spectrum disorders
    • Jul 15
    • D. Pinto, et al., "Functional impact of global rare copy number variation in autism spectrum disorders," Nature, vol. 466, pp. 368-72, Jul 15 2010.
    • (2010) Nature , vol.466 , pp. 368-372
    • Pinto, D.1
  • 7
    • 79953057217 scopus 로고    scopus 로고
    • Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia
    • Feb 23
    • V. Vacic, et al., "Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia," Nature, Feb 23 2011.
    • (2011) Nature
    • Vacic, V.1
  • 8
    • 33646163019 scopus 로고    scopus 로고
    • BioHMM: A heterogeneous hidden Markov model for segmenting array CGH data
    • May 1
    • J. C. Marioni, et al., "BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data," Bioinformatics, vol. 22, pp. 1144-6, May 1 2006.
    • (2006) Bioinformatics , vol.22 , pp. 1144-1146
    • Marioni, J.C.1
  • 10
    • 77956207880 scopus 로고    scopus 로고
    • MixHMM: Inferring copy number variation and allelic imbalance using SNP arrays and tumor samples mixed with stromal cells
    • Z. Liu, et al., "MixHMM: inferring copy number variation and allelic imbalance using SNP arrays and tumor samples mixed with stromal cells," PLoS One, vol. 5, p. e10909, 2010.
    • (2010) PLoS One , vol.5
    • Liu, Z.1
  • 11
    • 35948984173 scopus 로고    scopus 로고
    • PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
    • DOI 10.1101/gr.6861907
    • K. Wang, et al., "PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data," Genome Res, vol. 17, pp. 1665-74, Nov 2007. (Pubitemid 350074862)
    • (2007) Genome Research , vol.17 , Issue.11 , pp. 1665-1674
    • Wang, K.1    Li, M.2    Hadley, D.3    Liu, R.4    Glessner, J.5    Grant, S.F.A.6    Hakonarson, H.7    Bucan, M.8
  • 12
    • 79951970227 scopus 로고    scopus 로고
    • CNVnator: An approach to discover, genotype and characterize typical and atypical CNVs from family and population genome sequencing
    • Feb 7
    • A. Abyzov, et al., "CNVnator: An approach to discover, genotype and characterize typical and atypical CNVs from family and population genome sequencing," Genome Res, Feb 7 2011.
    • (2011) Genome Res
    • Abyzov, A.1
  • 13
    • 64849083125 scopus 로고    scopus 로고
    • CNV-seq, a new method to detect copy number variation using high-throughput sequencing
    • C. Xie and M. T. Tammi, "CNV-seq, a new method to detect copy number variation using high-throughput sequencing," BMC Bioinformatics, vol. 10, p. 80, 2009.
    • (2009) BMC Bioinformatics , vol.10 , pp. 80
    • Xie, C.1    Tammi, M.T.2
  • 14
    • 58149218240 scopus 로고    scopus 로고
    • High-resolution mapping of copy-number alterations with massively parallel sequencing
    • Jan
    • D. Y. Chiang, et al., "High-resolution mapping of copy-number alterations with massively parallel sequencing," Nat Methods, vol. 6, pp. 99-103, Jan 2009.
    • (2009) Nat Methods , vol.6 , pp. 99-103
    • Chiang, D.Y.1
  • 15
    • 77955635446 scopus 로고    scopus 로고
    • rSW-seq: Algorithm for detection of copy number alterations in deep sequencing data
    • T. M. Kim, et al., "rSW-seq: algorithm for detection of copy number alterations in deep sequencing data," BMC Bioinformatics, vol. 11, p. 432, 2010.
    • (2010) BMC Bioinformatics , vol.11 , pp. 432
    • Kim, T.M.1
  • 16
    • 69749122557 scopus 로고    scopus 로고
    • Sensitive and accurate detection of copy number variants using read depth of coverage
    • Sep
    • S. Yoon, et al., "Sensitive and accurate detection of copy number variants using read depth of coverage," Genome Res, vol. 19, pp. 1586-92, Sep 2009.
    • (2009) Genome Res , vol.19 , pp. 1586-1592
    • Yoon, S.1
  • 17
    • 70249111091 scopus 로고    scopus 로고
    • Targeted capture and massively parallel sequencing of 12 human exomes
    • Sep 10
    • S. B. Ng, et al., "Targeted capture and massively parallel sequencing of 12 human exomes," Nature, vol. 461, pp. 272-6, Sep 10 2009.
    • (2009) Nature , vol.461 , pp. 272-276
    • Ng, S.B.1
  • 18
    • 79551621409 scopus 로고    scopus 로고
    • ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads
    • C. A. Miller, et al., "ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads," PLoS One, vol. 6, p. e16327, 2011.
    • (2011) PLoS One , vol.6
    • Miller, C.A.1
  • 19
    • 33747890138 scopus 로고    scopus 로고
    • Integrating copy number polymorphisms into array CGH analysis using a robust HMM
    • Jul 15
    • S. P. Shah, et al., "Integrating copy number polymorphisms into array CGH analysis using a robust HMM," Bioinformatics, vol. 22, pp. e431-9, Jul 15 2006.
    • (2006) Bioinformatics , vol.22
    • Shah, S.P.1
  • 20
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Feb 15
    • E. S. Lander, et al., "Initial sequencing and analysis of the human genome," Nature, vol. 409, pp. 860-921, Feb 15 2001.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 21
    • 77950461601 scopus 로고    scopus 로고
    • Origins and functional impact of copy number variation in the human genome
    • Apr 1
    • D. F. Conrad, et al., "Origins and functional impact of copy number variation in the human genome," Nature, vol. 464, pp. 704-12, Apr 1 2010.
    • (2010) Nature , vol.464 , pp. 704-712
    • Conrad, D.F.1
  • 22
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Jul 15
    • H. Li and R. Durbin, "Fast and accurate short read alignment with Burrows-Wheeler transform," Bioinformatics, vol. 25, pp. 1754-60, Jul 15 2009.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 23
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • Sep
    • A. McKenna, et al., "The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data," Genome Res, vol. 20, pp. 1297-303, Sep 2010.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.