메뉴 건너뛰기




Volumn 13, Issue 6, 2014, Pages 1585-1597

Proteome-wide epitope mapping of antibodies using ultra-dense peptide arrays

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; EPITOPE; MONOCLONAL ANTIBODY; POLYCLONAL ANTIBODY; PROTEOME; RECOMBINANT PROTEIN; TRYPSIN;

EID: 84901938911     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M113.033308     Document Type: Article
Times cited : (106)

References (45)
  • 2
    • 84875701652 scopus 로고    scopus 로고
    • Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells
    • Stadler, C., Rexhepaj, E., Singan, V. R., Murphy, R. F., Pepperkok, R., Uhlen, M., Simpson, J. C., and Lundberg, E. (2013) Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells. Nat. Methods 10, 315-323
    • (2013) Nat. Methods , vol.10 , pp. 315-323
    • Stadler, C.1    Rexhepaj, E.2    Singan, V.R.3    Murphy, R.F.4    Pepperkok, R.5    Uhlen, M.6    Simpson, J.C.7    Lundberg, E.8
  • 3
    • 84871983086 scopus 로고    scopus 로고
    • Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry
    • Gillette, M. A., and Carr, S. A. (2013) Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry. Nat. Methods 10, 28-34
    • (2013) Nat. Methods , vol.10 , pp. 28-34
    • Gillette, M.A.1    Carr, S.A.2
  • 4
    • 8844233567 scopus 로고    scopus 로고
    • Mass Spectrometric Quantitation of Peptides and Proteins Using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA)
    • DOI 10.1021/pr034086h
    • Anderson, N. L., Anderson, N. G., Haines, L. R., Hardie, D. B., Olafson, R. W., and Pearson, T. W. (2004) Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA). J. Proteome Res. 3, 235-244 (Pubitemid 38500990)
    • (2004) Journal of Proteome Research , vol.3 , Issue.2 , pp. 235-244
    • Anderson, N.L.1    Anderson, N.G.2    Haines, L.R.3    Hardie, D.B.4    Olafson, R.W.5    Pearson, T.W.6
  • 6
    • 0035358814 scopus 로고    scopus 로고
    • Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics
    • DOI 10.1016/S1367-5931(00)00208-8
    • Irving, M. B., Pan, O., and Scott, J. K. (2001) Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics. Curr. Opin. Chem. Biol. 5, 314-324 (Pubitemid 32718529)
    • (2001) Current Opinion in Chemical Biology , vol.5 , Issue.3 , pp. 314-324
    • Irving, M.B.1    Pan, O.2    Scott, J.K.3
  • 8
    • 84861226260 scopus 로고    scopus 로고
    • An analysis of B-cell epitope discontinuity
    • Sivalingam, G. N., and Shepherd, A. J. (2012) An analysis of B-cell epitope discontinuity. Mol. Immunol. 51, 304-309
    • (2012) Mol. Immunol. , vol.51 , pp. 304-309
    • Sivalingam, G.N.1    Shepherd, A.J.2
  • 9
    • 0036102156 scopus 로고    scopus 로고
    • Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein
    • DOI 10.1110/ps.4670102
    • Baerga-Ortiz, A., Hughes, C. A., Mandell, J. G., and Komives, E. A. (2002) Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein. Protein Sci. 11, 1300-1308 (Pubitemid 34547202)
    • (2002) Protein Science , vol.11 , Issue.6 , pp. 1300-1308
    • Baerga-Ortiz, A.1    Hughes, C.A.2    Mandell, J.G.3    Komives, E.A.4
  • 10
    • 0026656122 scopus 로고
    • Spot-synthesis: An easy technique for the positionally addressable, parallel chemical synthesis on a membrane support
    • Frank, R. (1992) Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support. Tetrahedron 48, 9217-9232
    • (1992) Tetrahedron , vol.48 , pp. 9217-9232
    • Frank, R.1
  • 12
    • 0035515511 scopus 로고    scopus 로고
    • Epitope mapping and affinity purification of monospecific antibodies by Escherichia coli cell surface display of gene-derived random peptide libraries
    • Christmann, A., Wentzel, A., Meyer, C., Meyers, G., and Kolmar, H. (2001) Epitope mapping and affinity purification of monospecific antibodies by Escherichia coli cell surface display of gene-derived random peptide libraries. J. Immunol. Methods 257, 163-173
    • (2001) J. Immunol. Methods , vol.257 , pp. 163-173
    • Christmann, A.1    Wentzel, A.2    Meyer, C.3    Meyers, G.4    Kolmar, H.5
  • 13
    • 1942520362 scopus 로고    scopus 로고
    • Domain-level antibody epitope mapping through yeast surface display of epidermal growth factor receptor fragments
    • DOI 10.1016/j.jim.2004.01.024, PII S0022175904000699
    • Cochran, J. R., Kim, Y. S., Olsen, M. J., Bhandari, R., and Wittrup, K. D. (2004) Domain-level antibody epitope mapping through yeast surface display of epidermal growth factor receptor fragments. J. Immunol. Methods 287, 147-158 (Pubitemid 38510216)
    • (2004) Journal of Immunological Methods , vol.287 , Issue.1-2 , pp. 147-158
    • Cochran, J.R.1    Kim, Y.-S.2    Olsen, M.J.3    Bhandari, R.4    Wittrup, K.D.5
  • 14
    • 0029588523 scopus 로고
    • Mapping of linear epitopes recognized by monoclonal antibodies with gene fragment phage display libraries
    • Petersen, G., Song, D., Hügle-Dörr, B., Oldenburg, I., and Bautz, E. K. F. (1995) Mapping of linear epitopes recognized by monoclonal antibodies with gene-fragment phage display libraries. Mol. Gen. Genet. 249, 425-431 (Pubitemid 26019052)
    • (1995) Molecular and General Genetics , vol.249 , Issue.4 , pp. 425-431
    • Petersen, G.1    Song, D.2    Hugle-Dorr, B.3    Oldenburg, I.4    Bautz, E.K.F.5
  • 15
    • 57049086900 scopus 로고    scopus 로고
    • Epitope mapping of antibodies using bacterial surface display
    • Rockberg, J., Lofblom, J., Hjelm, B., Uhlen, M., and Stahl, S. (2008) Epitope mapping of antibodies using bacterial surface display. Nat. Methods 5, 1039-1045
    • (2008) Nat. Methods , vol.5 , pp. 1039-1045
    • Rockberg, J.1    Lofblom, J.2    Hjelm, B.3    Uhlen, M.4    Stahl, S.5
  • 17
    • 0024403619 scopus 로고
    • High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis
    • Cunningham, B. C., and Wells, J. A. (1989) High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 244, 1081-1085 (Pubitemid 19152300)
    • (1989) Science , vol.244 , Issue.4908 , pp. 1081-1085
    • Cunningham, B.C.1    Wells, J.A.2
  • 18
    • 77952336120 scopus 로고    scopus 로고
    • Epitope mapping of antibodies using a cell array-based polypeptide library
    • Maier, R. H., Maier, C. J., Rid, R., Hintner, H., Bauer, J. W., and Onder, K. (2010) Epitope mapping of antibodies using a cell array-based polypeptide library. J. Biomol. Screen. 15, 418-426
    • (2010) J. Biomol. Screen. , vol.15 , pp. 418-426
    • Maier, R.H.1    Maier, C.J.2    Rid, R.3    Hintner, H.4    Bauer, J.W.5    Onder, K.6
  • 19
  • 20
    • 0026108692 scopus 로고
    • Light-directed, spatially addressable parallel chemical synthesis
    • Fodor, S. P., Read, J. L., Pirrung, M. C., Stryer, L., Lu, A. T., and Solas, D. (1991) Light-directed, spatially addressable parallel chemical synthesis. Science 251, 767-773 (Pubitemid 21926165)
    • (1991) Science , vol.251 , Issue.4995 , pp. 767-773
    • Fodor, S.P.A.1    Read, J.L.2    Pirrung, M.C.3    Stryer, L.4    Lu, A.T.5    Solas, D.6
  • 21
    • 0036712071 scopus 로고    scopus 로고
    • Individually addressable parallel peptide synthesis on microchips
    • DOI 10.1038/nbt723
    • Pellois, J. P., Zhou, X., Srivannavit, O., Zhou, T., Gulari, E., and Gao, X. (2002) Individually addressable parallel peptide synthesis on microchips. Nat. Biotechnol. 20, 922-926 (Pubitemid 35001130)
    • (2002) Nature Biotechnology , vol.20 , Issue.9 , pp. 922-926
    • Pellois, J.P.1    Zhou, X.2    Srivannavit, O.3    Zhou, T.4    Gulari, E.5    Gao, X.6
  • 23
    • 0032846163 scopus 로고    scopus 로고
    • Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array
    • DOI 10.1038/13664
    • Singh-Gasson, S., Green, R. D., Yue, Y., Nelson, C., Blattner, F., Sussman, M. R., and Cerrina, F. (1999) Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat. Biotechnol. 17, 974-978 (Pubitemid 29474852)
    • (1999) Nature Biotechnology , vol.17 , Issue.10 , pp. 974-978
    • Singh-Gasson, S.1    Green, R.D.2    Yue, Y.3    Nelson, C.4    Blattner, F.5    Sussman, M.R.6    Cerrina, F.7
  • 24
    • 33645518649 scopus 로고    scopus 로고
    • Synthesis and characterization of peptide grafted porous polymer microstructures
    • Northen, T. R., Brune, D. C., and Woodbury, N. W. (2006) Synthesis and characterization of peptide grafted porous polymer microstructures. Biomacromolecules 7, 750-754
    • (2006) Biomacromolecules , vol.7 , pp. 750-754
    • Northen, T.R.1    Brune, D.C.2    Woodbury, N.W.3
  • 25
    • 77954555140 scopus 로고    scopus 로고
    • Automated maskless photolithography system for peptide microarray synthesis on a chip
    • Shin, D. S., Lee, K. N., Yoo, B. W., Kim, J., Kim, M., Kim, Y. K., and Lee, Y. S. (2010) Automated maskless photolithography system for peptide microarray synthesis on a chip. J. Comb. Chem. 12, 463-471
    • (2010) J. Comb. Chem. , vol.12 , pp. 463-471
    • Shin, D.S.1    Lee, K.N.2    Yoo, B.W.3    Kim, J.4    Kim, M.5    Kim, Y.K.6    Lee, Y.S.7
  • 26
    • 0142169027 scopus 로고    scopus 로고
    • Synthesis of photolabile 2-(2-nitrophenyl)propyloxycarbonyl protected amino acids
    • DOI 10.1016/j.tetlet.2003.09.155
    • Bhushan, K. R., DeLisi, C., and Laursen, R. A. (2003) Synthesis of photolabile 2-(2-nitrophenyl)propyloxycarbonyl protected amino acids. Tetrahedron Lett. 44, 8585-8588 (Pubitemid 37315752)
    • (2003) Tetrahedron Letters , vol.44 , Issue.47 , pp. 8585-8588
    • Bhushan, K.R.1    DeLisi, C.2    Laursen, R.A.3
  • 28
    • 3242702469 scopus 로고    scopus 로고
    • Selective enrichment of monospecific polyclonal antibodies for antibody-based proteomics efforts
    • DOI 10.1016/j.chroma.2004.06.008, PII S0021967304008933
    • Agaton, C., Falk, R., Hoiden Guthenberg, I., Gostring, L., Uhlen, M., and Hober, S. (2004) Selective enrichment of monospecific polyclonal antibodies for antibody-based proteomics efforts. J. Chromatogr. A 1043, 33-40 (Pubitemid 38952773)
    • (2004) Journal of Chromatography A , vol.1043 , Issue.1 , pp. 33-40
    • Agaton, C.1    Falk, R.2    Hoiden, G.I.3    Gostring, L.4    Uhlen, M.5    Hober, S.6
  • 30
    • 33750708894 scopus 로고    scopus 로고
    • Production and characterization of murine monoclonal antibodies against human podocalyxin
    • DOI 10.1111/j.1399-0039.2006.00692.x
    • Rodriguez, R. B., Butta, N., Larrucea, S., Alonso, S., and Parrilla, R. (2006) Production and characterization of murine monoclonal antibodies against human podocalyxin. Tissue Antigens 68, 407-417 (Pubitemid 44707052)
    • (2006) Tissue Antigens , vol.68 , Issue.5 , pp. 407-417
    • Rodriguez, R.B.1    Butta, N.2    Larrucea, S.3    Alonso, S.4    Parrilla, R.5
  • 32
    • 0028871915 scopus 로고
    • Molecular cloning, expression, and characterization of podocalyxin-like protein 1 from rabbit as a transmembrane protein of glomerular podocytes and vascular endothelium
    • Kershaw, D. B., Thomas, P. E., Wharram, B. L., Goyal, M., Wiggins, J. E., Whiteside, C. I., and Wiggins, R. C. (1995) Molecular cloning, expression, and characterization of podocalyxin-like protein 1 from rabbit as a transmembrane protein of glomerular podocytes and vascular endothelium. J. Biol. Chem. 270, 29439-29446
    • (1995) J. Biol. Chem. , vol.270 , pp. 29439-29446
    • Kershaw, D.B.1    Thomas, P.E.2    Wharram, B.L.3    Goyal, M.4    Wiggins, J.E.5    Whiteside, C.I.6    Wiggins, R.C.7
  • 37
    • 79960562238 scopus 로고    scopus 로고
    • Low RBM3 protein expression correlates with tumour progression and poor prognosis in malignant melanoma: An analysis of 215 cases from the Malmo Diet and Cancer Study
    • Jonsson, L., Bergman, J., Nodin, B., Manjer, J., Ponten, F., Uhlen, M., and Jirstrom, K. (2011) Low RBM3 protein expression correlates with tumour progression and poor prognosis in malignant melanoma: an analysis of 215 cases from the Malmo Diet and Cancer Study. J. Transl. Med. 9, 114
    • (2011) J. Transl. Med. , vol.9 , pp. 114
    • Jonsson, L.1    Bergman, J.2    Nodin, B.3    Manjer, J.4    Ponten, F.5    Uhlen, M.6    Jirstrom, K.7
  • 41
    • 0343563843 scopus 로고
    • Chemically synthesized peptides predicted from the nucleotide sequence of the hepatitis B virus genome elicit antibodies reactive with the native envelope protein of Dane particles
    • DOI 10.1073/pnas.78.6.3403
    • Lerner, R. A., Green, N., Alexander, H., Liu, F. T., Sutcliffe, J. G., and Shinnick, T. M. (1981) Chemically synthesized peptides predicted from the nucleotide sequence of the hepatitis B virus genome elicit antibodies reactive with the native envelope protein of Dane particles. Proc. Natl. Acad. Sci. U.S.A. 78, 3403-3407 (Pubitemid 11059298)
    • (1981) Proceedings of the National Academy of Sciences of the United States of America , vol.78 , Issue.6 I , pp. 3403-3407
    • Lerner, R.A.1    Green, N.2    Alexander, H.3
  • 42
    • 14644435825 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins and their functions
    • DOI 10.1038/nrm1589
    • Dyson, H. J., and Wright, P. E. (2005) Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6, 197-208 (Pubitemid 40314921)
    • (2005) Nature Reviews Molecular Cell Biology , vol.6 , Issue.3 , pp. 197-208
    • Dyson, H.J.1    Wright, P.E.2
  • 43
    • 84858440181 scopus 로고    scopus 로고
    • Production and characterization of peptide antibodies
    • Trier, N. H., Hansen, P. R., and Houen, G. (2012) Production and characterization of peptide antibodies. Methods 56, 136-144
    • (2012) Methods , vol.56 , pp. 136-144
    • Trier, N.H.1    Hansen, P.R.2    Houen, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.