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Volumn 84, Issue 3, 2014, Pages 215-221

Sensitive and specific detection of EML4-ALK rearrangements in non-small cell lung cancer (NSCLC) specimens by multiplex amplicon RNA massive parallel sequencing

Author keywords

454 massive parallel sequencing; ALK rearrangement; EML4 ALK; Molecular diagnostic; NSCLC

Indexed keywords

ANAPLASTIC LYMPHOMA RECEPTOR TYROSINE KINASE; ECHINODERM MICROTUBULE ASSOCIATED PROTEIN LIKE 4; MESSENGER RNA; MICROTUBULE ASSOCIATED PROTEIN; PROTEIN TYROSINE KINASE; UNCLASSIFIED DRUG; EML4-ALK FUSION PROTEIN, HUMAN; ONCOPROTEIN;

EID: 84901929258     PISSN: 01695002     EISSN: 18728332     Source Type: Journal    
DOI: 10.1016/j.lungcan.2014.03.002     Document Type: Article
Times cited : (27)

References (39)
  • 1
    • 34547638047 scopus 로고    scopus 로고
    • Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer
    • Soda M., Choi Y.L., Enomoto M., Takada S., Yamashita Y., Ishikawa S., et al. Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer. Nature 2007, 448:561-566.
    • (2007) Nature , vol.448 , pp. 561-566
    • Soda, M.1    Choi, Y.L.2    Enomoto, M.3    Takada, S.4    Yamashita, Y.5    Ishikawa, S.6
  • 2
    • 36849065315 scopus 로고    scopus 로고
    • Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
    • Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., et al. Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. Cell 2007, 131:1190-1203.
    • (2007) Cell , vol.131 , pp. 1190-1203
    • Rikova, K.1    Guo, A.2    Zeng, Q.3    Possemato, A.4    Yu, J.5    Haack, H.6
  • 4
    • 84866934606 scopus 로고    scopus 로고
    • Activity and safety of crizotinib in patients with ALK-positive non-small-cell lung cancer: updated results from a phase 1 study
    • Camidge D.R., Bang Y.J., Kwak E.L., Iafrate A.J., Varella-Garcia M., Fox S.B., et al. Activity and safety of crizotinib in patients with ALK-positive non-small-cell lung cancer: updated results from a phase 1 study. Lancet Oncol 2012, 13:1011-1019.
    • (2012) Lancet Oncol , vol.13 , pp. 1011-1019
    • Camidge, D.R.1    Bang, Y.J.2    Kwak, E.L.3    Iafrate, A.J.4    Varella-Garcia, M.5    Fox, S.B.6
  • 5
    • 84879071011 scopus 로고    scopus 로고
    • Crizotinib versus chemotherapy in advanced ALK-positive lung cancer
    • Shaw A.T., Kim D.W., Nakagawa K., Seto T., Crinó L., Ahn M.J., et al. Crizotinib versus chemotherapy in advanced ALK-positive lung cancer. N Engl J Med 2013, 368:2385-2394.
    • (2013) N Engl J Med , vol.368 , pp. 2385-2394
    • Shaw, A.T.1    Kim, D.W.2    Nakagawa, K.3    Seto, T.4    Crinó, L.5    Ahn, M.J.6
  • 6
    • 84879290901 scopus 로고    scopus 로고
    • Molecular testing guideline for selection of lung cancer patients for EGFR and ALK tyrosine kinase inhibitors: guideline from the College of American Pathologists, International Association for the Study of Lung Cancer, and Association for Molecular Pathology
    • Lindeman N.I., Cagle P.T., Beasley M.B., Chitale D.A., Dacic S., Giaccone G., et al. Molecular testing guideline for selection of lung cancer patients for EGFR and ALK tyrosine kinase inhibitors: guideline from the College of American Pathologists, International Association for the Study of Lung Cancer, and Association for Molecular Pathology. J Mol Diagn 2013, 15:415-453.
    • (2013) J Mol Diagn , vol.15 , pp. 415-453
    • Lindeman, N.I.1    Cagle, P.T.2    Beasley, M.B.3    Chitale, D.A.4    Dacic, S.5    Giaccone, G.6
  • 8
    • 84860500563 scopus 로고    scopus 로고
    • Clinicopathologic implication of ALK rearrangement in surgically resected lung cancer: a proposal of diagnostic algorithm for ALK-rearranged adenocarcinoma
    • Paik J.H., Choi C.M., Kim H., Jang S.J., Choe G., Kim D.K., et al. Clinicopathologic implication of ALK rearrangement in surgically resected lung cancer: a proposal of diagnostic algorithm for ALK-rearranged adenocarcinoma. Lung Cancer 2012, 76:403-409.
    • (2012) Lung Cancer , vol.76 , pp. 403-409
    • Paik, J.H.1    Choi, C.M.2    Kim, H.3    Jang, S.J.4    Choe, G.5    Kim, D.K.6
  • 9
    • 77953291664 scopus 로고    scopus 로고
    • The biology and treatment of EML4-ALK non-small cell lung cancer
    • Sasaki T., Rodig S.J., Chirieac L.R., Jänne P.A. The biology and treatment of EML4-ALK non-small cell lung cancer. Eur J Cancer 2010, 46:1773-1780.
    • (2010) Eur J Cancer , vol.46 , pp. 1773-1780
    • Sasaki, T.1    Rodig, S.J.2    Chirieac, L.R.3    Jänne, P.A.4
  • 10
    • 84875936053 scopus 로고    scopus 로고
    • ALK in lung cancer: past, present, and future
    • Shaw A.T., Engelman J.A. ALK in lung cancer: past, present, and future. J Clin Oncol 2013, 31:1105-1111.
    • (2013) J Clin Oncol , vol.31 , pp. 1105-1111
    • Shaw, A.T.1    Engelman, J.A.2
  • 11
    • 63949086127 scopus 로고    scopus 로고
    • KIF5B-ALK, a novel fusion oncokinase identified by an immunohistochemistry-based diagnostic system for ALK-positive lung cancer
    • Takeuchi K., Choi Y.L., Togashi Y., Soda M., Hatano S., Inamura K., et al. KIF5B-ALK, a novel fusion oncokinase identified by an immunohistochemistry-based diagnostic system for ALK-positive lung cancer. Clin Cancer Res 2009, 15:3143-3149.
    • (2009) Clin Cancer Res , vol.15 , pp. 3143-3149
    • Takeuchi, K.1    Choi, Y.L.2    Togashi, Y.3    Soda, M.4    Hatano, S.5    Inamura, K.6
  • 12
    • 84856695102 scopus 로고    scopus 로고
    • KLC1-ALK: a novel fusion in lung cancer identified using a formalin-fixed paraffin-embedded tissue only
    • Togashi Y., Soda M., Sakata S., Sugawara E., Hatano S., Asaka R., et al. KLC1-ALK: a novel fusion in lung cancer identified using a formalin-fixed paraffin-embedded tissue only. PLOS ONE 2012, 7:e31323.
    • (2012) PLOS ONE , vol.7
    • Togashi, Y.1    Soda, M.2    Sakata, S.3    Sugawara, E.4    Hatano, S.5    Asaka, R.6
  • 14
    • 84867557923 scopus 로고    scopus 로고
    • A prospective PCR-based screening for the EML4-ALK oncogene in non-small cell lung cancer
    • Soda M., Isobe K., Inoue A., Maemondo M., Oizumi S., Fujita Y., et al. A prospective PCR-based screening for the EML4-ALK oncogene in non-small cell lung cancer. Clin Cancer Res 2012, 18:5682-5689.
    • (2012) Clin Cancer Res , vol.18 , pp. 5682-5689
    • Soda, M.1    Isobe, K.2    Inoue, A.3    Maemondo, M.4    Oizumi, S.5    Fujita, Y.6
  • 15
    • 84870297371 scopus 로고    scopus 로고
    • Incidence and patterns of ALK FISH abnormalities seen in a large unselected series of lung carcinomas
    • Dai Z., Kelly J.C., Meloni-Ehrig A., Slovak M.L., Boles D., Christacos N.C., et al. Incidence and patterns of ALK FISH abnormalities seen in a large unselected series of lung carcinomas. Mol Cytogenet 2012, 5:44.
    • (2012) Mol Cytogenet , vol.5 , pp. 44
    • Dai, Z.1    Kelly, J.C.2    Meloni-Ehrig, A.3    Slovak, M.L.4    Boles, D.5    Christacos, N.C.6
  • 16
    • 84881256393 scopus 로고    scopus 로고
    • ALK rearrangements are mutually exclusive with mutations in EGFR or KRAS: an analysis of 1683 patients with non-small cell lung cancer
    • Gainor J.F., Varghese A.M., Ou S.H., Kabraji S., Awad M.M., Katayama R., et al. ALK rearrangements are mutually exclusive with mutations in EGFR or KRAS: an analysis of 1683 patients with non-small cell lung cancer. Clin Cancer Res 2013, 19:4273-4281.
    • (2013) Clin Cancer Res , vol.19 , pp. 4273-4281
    • Gainor, J.F.1    Varghese, A.M.2    Ou, S.H.3    Kabraji, S.4    Awad, M.M.5    Katayama, R.6
  • 17
    • 84862865652 scopus 로고    scopus 로고
    • A novel EML4-ALK variant: exon 6 of EML4 fused to exon 19 of ALK
    • Penzel R., Schirmacher P., Warth A. A novel EML4-ALK variant: exon 6 of EML4 fused to exon 19 of ALK. J Thorac Oncol 2012, 7:1198-1199.
    • (2012) J Thorac Oncol , vol.7 , pp. 1198-1199
    • Penzel, R.1    Schirmacher, P.2    Warth, A.3
  • 18
    • 66949152073 scopus 로고    scopus 로고
    • Anaplastic lymphoma kinase: signalling in development and disease
    • Palmer R.H., Vernersson E., Grabbe C., Hallberg B. Anaplastic lymphoma kinase: signalling in development and disease. Biochem J 2009, 420:45-361.
    • (2009) Biochem J , vol.420 , pp. 45-361
    • Palmer, R.H.1    Vernersson, E.2    Grabbe, C.3    Hallberg, B.4
  • 19
    • 67650441507 scopus 로고    scopus 로고
    • Anaplastic lymphoma kinase immunoreactivity correlates with ALK gene rearrangement and transcriptional up-regulation in non-small cell lung carcinomas
    • Boland J.M., Erdogan S., Vasmatzis G., Yang P., Tillmans L.S., Johnson M.R., et al. Anaplastic lymphoma kinase immunoreactivity correlates with ALK gene rearrangement and transcriptional up-regulation in non-small cell lung carcinomas. Hum Pathol 2009, 40:1152-1158.
    • (2009) Hum Pathol , vol.40 , pp. 1152-1158
    • Boland, J.M.1    Erdogan, S.2    Vasmatzis, G.3    Yang, P.4    Tillmans, L.S.5    Johnson, M.R.6
  • 21
    • 70349510460 scopus 로고    scopus 로고
    • Exon array profiling detects EML4-ALK fusion in breast, colorectal, and non-small cell lung cancers
    • Lin E., Li L., Guan Y., Soriano R., Rivers C.S., Mohan S., et al. Exon array profiling detects EML4-ALK fusion in breast, colorectal, and non-small cell lung cancers. Mol Cancer Res 2009, 7:1466-1476.
    • (2009) Mol Cancer Res , vol.7 , pp. 1466-1476
    • Lin, E.1    Li, L.2    Guan, Y.3    Soriano, R.4    Rivers, C.S.5    Mohan, S.6
  • 22
    • 77954399760 scopus 로고    scopus 로고
    • Fusion of EML4 and ALK is associated with development of lung adenocarcinomas lacking EGFR and KRAS mutations and is correlated with ALK expression
    • Zhang X., Zhang S., Yang X., Yang J., Zhou Q., Yin L., et al. Fusion of EML4 and ALK is associated with development of lung adenocarcinomas lacking EGFR and KRAS mutations and is correlated with ALK expression. Mol Cancer 2010, 9:188.
    • (2010) Mol Cancer , vol.9 , pp. 188
    • Zhang, X.1    Zhang, S.2    Yang, X.3    Yang, J.4    Zhou, Q.5    Yin, L.6
  • 23
    • 84865743662 scopus 로고    scopus 로고
    • The use of quantitative real-time reverse transcriptase PCR for 5' and 3' portions of ALK transcripts to detect ALK rearrangements in lung cancers
    • Wang R., Pan Y., Li C., Hu H., Zhang Y., Li H., et al. The use of quantitative real-time reverse transcriptase PCR for 5' and 3' portions of ALK transcripts to detect ALK rearrangements in lung cancers. Clin Cancer Res 2012, 18:4725-4732.
    • (2012) Clin Cancer Res , vol.18 , pp. 4725-4732
    • Wang, R.1    Pan, Y.2    Li, C.3    Hu, H.4    Zhang, Y.5    Li, H.6
  • 24
    • 78650309875 scopus 로고    scopus 로고
    • COT drives resistance to RAF inhibition through MAP kinase pathway reactivation
    • Johannessen C.M., Boehm J.S., Kim S.Y., Thomas S.R., Wardwell L., Johnson L.A., et al. COT drives resistance to RAF inhibition through MAP kinase pathway reactivation. Nature 2010, 468:968-972.
    • (2010) Nature , vol.468 , pp. 968-972
    • Johannessen, C.M.1    Boehm, J.S.2    Kim, S.Y.3    Thomas, S.R.4    Wardwell, L.5    Johnson, L.A.6
  • 25
    • 79955656623 scopus 로고    scopus 로고
    • Exon scanning by reverse transcriptase-polymerase chain reaction for detection of known and novel EML4-ALK fusion variants in non-small cell lung cancer
    • Sanders H.R., Li H.R., Bruey J.M., Scheerle J.A., Meloni-Ehrig A.M., Kelly J.C., et al. Exon scanning by reverse transcriptase-polymerase chain reaction for detection of known and novel EML4-ALK fusion variants in non-small cell lung cancer. Cancer Genet 2011, 204:45-52.
    • (2011) Cancer Genet , vol.204 , pp. 45-52
    • Sanders, H.R.1    Li, H.R.2    Bruey, J.M.3    Scheerle, J.A.4    Meloni-Ehrig, A.M.5    Kelly, J.C.6
  • 26
    • 69349083935 scopus 로고    scopus 로고
    • Unique clinicopathologic features characterize ALK-rearranged lung adenocarcinoma in the western population
    • Rodig S.J., Mino-Kenudson M., Dacic S., Yeap B.Y., Shaw A., Barletta J.A., et al. Unique clinicopathologic features characterize ALK-rearranged lung adenocarcinoma in the western population. Clin Cancer Res 2009, 15:5216-5223.
    • (2009) Clin Cancer Res , vol.15 , pp. 5216-5223
    • Rodig, S.J.1    Mino-Kenudson, M.2    Dacic, S.3    Yeap, B.Y.4    Shaw, A.5    Barletta, J.A.6
  • 27
    • 80051784751 scopus 로고    scopus 로고
    • Detection of ALK gene rearrangement in non-small cell lung cancer: a comparison of fluorescence in situ hybridization and chromogenic in situ hybridization with correlation of ALK protein expression
    • Kim H., Yoo S.B., Choe J.Y., Paik J.H., Xu X., Nitta H., et al. Detection of ALK gene rearrangement in non-small cell lung cancer: a comparison of fluorescence in situ hybridization and chromogenic in situ hybridization with correlation of ALK protein expression. J Thorac Oncol 2011, 6:1359-1366.
    • (2011) J Thorac Oncol , vol.6 , pp. 1359-1366
    • Kim, H.1    Yoo, S.B.2    Choe, J.Y.3    Paik, J.H.4    Xu, X.5    Nitta, H.6
  • 28
    • 84864231379 scopus 로고    scopus 로고
    • Comparison of reverse transcription-polymerase chain reaction, immunohistochemistry, and fluorescence in situ hybridization methodologies for detection of echinoderm microtubule-associated proteinlike 4-anaplastic lymphoma kinase fusion-positive non-small cell lung carcinoma: implications for optimal clinical testing
    • Wallander M.L., Geiersbach K.B., Tripp S.R., Layfield L.J. Comparison of reverse transcription-polymerase chain reaction, immunohistochemistry, and fluorescence in situ hybridization methodologies for detection of echinoderm microtubule-associated proteinlike 4-anaplastic lymphoma kinase fusion-positive non-small cell lung carcinoma: implications for optimal clinical testing. Arch Pathol Lab Med 2012, 136:796-803.
    • (2012) Arch Pathol Lab Med , vol.136 , pp. 796-803
    • Wallander, M.L.1    Geiersbach, K.B.2    Tripp, S.R.3    Layfield, L.J.4
  • 29
    • 84879888405 scopus 로고    scopus 로고
    • Anaplastic lymphoma kinase (ALK) gene rearrangement in non-small cell lung cancer (NSCLC): results of a multi-centre ALK-testing
    • Laffert V.M., Warth A., Penzel R., Schirmacher P., Jonigk D., Kreipe H. Anaplastic lymphoma kinase (ALK) gene rearrangement in non-small cell lung cancer (NSCLC): results of a multi-centre ALK-testing. Lung Cancer 2013, 81:200-206.
    • (2013) Lung Cancer , vol.81 , pp. 200-206
    • Laffert, V.M.1    Warth, A.2    Penzel, R.3    Schirmacher, P.4    Jonigk, D.5    Kreipe, H.6
  • 30
    • 84876482049 scopus 로고    scopus 로고
    • ALK status testing in non-small cell lung carcinoma: correlation between ultrasensitive IHC and FISH
    • Minca E.C., Portier B.P., Wang Z., Lanigan C., Farver C.F., Feng Y., et al. ALK status testing in non-small cell lung carcinoma: correlation between ultrasensitive IHC and FISH. J Mol Diagn 2013, 15:341-346.
    • (2013) J Mol Diagn , vol.15 , pp. 341-346
    • Minca, E.C.1    Portier, B.P.2    Wang, Z.3    Lanigan, C.4    Farver, C.F.5    Feng, Y.6
  • 31
    • 84887075100 scopus 로고    scopus 로고
    • Chromogenic in situ hybridization is a reliable assay for detection of ALK rearrangements in adenocarcinomas of the lung
    • Schildhaus H.U., Deml K.F., Schmitz K., Meiboom M., Binot E., Hauke S., et al. Chromogenic in situ hybridization is a reliable assay for detection of ALK rearrangements in adenocarcinomas of the lung. Mod Pathol 2013, 26:1468-1477.
    • (2013) Mod Pathol , vol.26 , pp. 1468-1477
    • Schildhaus, H.U.1    Deml, K.F.2    Schmitz, K.3    Meiboom, M.4    Binot, E.5    Hauke, S.6
  • 32
    • 84874586164 scopus 로고    scopus 로고
    • Targeted resequencing reveals ALK fusions in non-small cell lung carcinomas detected by FISH, immunohistochemistry, and real-time RT-PCR: a comparison of four methods
    • Tuononen K., Sarhadi V.K., Wirtanen A., Rönty M., Salmenkivi K., Knuuttila A., et al. Targeted resequencing reveals ALK fusions in non-small cell lung carcinomas detected by FISH, immunohistochemistry, and real-time RT-PCR: a comparison of four methods. Biomed Res Int 2013, 2013:757490.
    • (2013) Biomed Res Int , vol.2013 , pp. 757490
    • Tuononen, K.1    Sarhadi, V.K.2    Wirtanen, A.3    Rönty, M.4    Salmenkivi, K.5    Knuuttila, A.6
  • 33
    • 77649091118 scopus 로고    scopus 로고
    • A novel, highly sensitive antibody allows for the routine detection of ALK-rearranged lung adenocarcinomas by standard immunohistochemistry
    • Mino-Kenudson M., Chirieac L.R., Law K., Hornick J.L., Lindeman N., Mark E.J., et al. A novel, highly sensitive antibody allows for the routine detection of ALK-rearranged lung adenocarcinomas by standard immunohistochemistry. Clin Cancer Res 2010, 16:1561-1571.
    • (2010) Clin Cancer Res , vol.16 , pp. 1561-1571
    • Mino-Kenudson, M.1    Chirieac, L.R.2    Law, K.3    Hornick, J.L.4    Lindeman, N.5    Mark, E.J.6
  • 34
    • 84884211534 scopus 로고    scopus 로고
    • Multiplexed gene expression and fusion transcript analysis to detect ALK fusions in lung cancer
    • Lira M.E., Kim T.M., Huang D., Deng S., Koh Y., Jang B., et al. Multiplexed gene expression and fusion transcript analysis to detect ALK fusions in lung cancer. J Mol Diagn 2013, 15:51-61.
    • (2013) J Mol Diagn , vol.15 , pp. 51-61
    • Lira, M.E.1    Kim, T.M.2    Huang, D.3    Deng, S.4    Koh, Y.5    Jang, B.6
  • 35
    • 84862776857 scopus 로고    scopus 로고
    • Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies
    • Lipson D., Capelletti M., Yelensky R., Otto G., Parker A., Jarosz M., et al. Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies. Nat Med 2012, 18:382-384.
    • (2012) Nat Med , vol.18 , pp. 382-384
    • Lipson, D.1    Capelletti, M.2    Yelensky, R.3    Otto, G.4    Parker, A.5    Jarosz, M.6
  • 36
    • 84865699238 scopus 로고    scopus 로고
    • Next-generation sequencing identifies and immunohistochemistry confirms a novel crizotinib-sensitive ALK rearrangement in a patient with metastatic non-small-cell lung cancer
    • Peled N., Palmer G., Hirsch F.R., Wynes M.W., Ilouze M., Varella-Garcia M., et al. Next-generation sequencing identifies and immunohistochemistry confirms a novel crizotinib-sensitive ALK rearrangement in a patient with metastatic non-small-cell lung cancer. J Thorac Oncol 2012, 7:e14-e16.
    • (2012) J Thorac Oncol , vol.7
    • Peled, N.1    Palmer, G.2    Hirsch, F.R.3    Wynes, M.W.4    Ilouze, M.5    Varella-Garcia, M.6
  • 38
    • 84876464230 scopus 로고    scopus 로고
    • Increased detection rates of EGFR and KRAS mutations in NSCLC specimens with low tumor cell content by 454 deep sequencing
    • Moskalev E.A., Stöhr R., Rieker R., Hebele S., Fuchs F., Sirbu H., et al. Increased detection rates of EGFR and KRAS mutations in NSCLC specimens with low tumor cell content by 454 deep sequencing. Virchows Arch 2013, 462:409-419.
    • (2013) Virchows Arch , vol.462 , pp. 409-419
    • Moskalev, E.A.1    Stöhr, R.2    Rieker, R.3    Hebele, S.4    Fuchs, F.5    Sirbu, H.6
  • 39
    • 84880664490 scopus 로고    scopus 로고
    • Novel targets in non-small cell lung cancer: ROS1 and RET fusions
    • Gainor J.F., Shaw A.T. Novel targets in non-small cell lung cancer: ROS1 and RET fusions. Oncologist 2013, 18:865-875.
    • (2013) Oncologist , vol.18 , pp. 865-875
    • Gainor, J.F.1    Shaw, A.T.2


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