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Volumn 21, Issue 1, 2014, Pages 25-36

New SNP markers reveal largely concordant clinal variation across the hybrid zone between Mytilus spp. in the Baltic Sea

Author keywords

Diagnostic markers; Hybrid index score; Population structure; Single locus clines

Indexed keywords


EID: 84901919883     PISSN: 18647782     EISSN: 18647790     Source Type: Journal    
DOI: 10.3354/ab00566     Document Type: Article
Times cited : (50)

References (45)
  • 1
    • 26944476716 scopus 로고    scopus 로고
    • Genomic organization of molecular differentiation in Norway Spruce (Picea abies)
    • Acheré V, Favre JM, Besnard G, Jeandroz S (2005) Genomic organization of molecular differentiation in Norway Spruce (Picea abies). Mol Ecol 14: 3191-3201
    • (2005) Mol Ecol , vol.14 , pp. 3191-3201
    • Acheré, V.1    Favre, J.M.2    Besnard, G.3    Jeandroz, S.4
  • 2
    • 78751649872 scopus 로고    scopus 로고
    • Detecting population structure in a high gene-flow species, Atlantic herring (Clupea harengus): Direct, simultaneous evaluation of neutral versus putatively selected loci
    • others
    • André C, Larsson LC, Laikre L, Bekkevold D and others (2010) Detecting population structure in a high gene-flow species, Atlantic herring (Clupea harengus): direct, simultaneous evaluation of neutral versus putatively selected loci. Heredity 2011: 270-280
    • (2010) Heredity , vol.2011 , pp. 270-280
    • André, C.1    Larsson, L.C.2    Laikre, L.3    Bekkevold, D.4
  • 3
    • 0024475736 scopus 로고
    • Adaptation, speciation and hybrid zones
    • Barton NH, Hewitt GM (1989) Adaptation, speciation and hybrid zones. Nature 341: 497-503
    • (1989) Nature , vol.341 , pp. 497-503
    • Barton, N.H.1    Hewitt, G.M.2
  • 4
    • 22744447651 scopus 로고    scopus 로고
    • Adaptation and speciation: What can F(st) tell us?
    • Beaumont MA (2005) Adaptation and speciation: what can F(st) tell us? Trends Ecol Evol 20: 435-440
    • (2005) Trends Ecol Evol , vol.20 , pp. 435-440
    • Beaumont, M.A.1
  • 6
    • 0004265420 scopus 로고
    • Correspondence analysis handbook
    • Balakrishnan N, Schucany WR, Garvey PR (eds), Marcel Dekker, New York, NY
    • Benzécri JP (1992) Correspondence analysis handbook. In: Balakrishnan N, Schucany WR, Garvey PR (eds) Sta tistics: a series of textbooks and monographs, Vol 125. Marcel Dekker, New York, NY
    • (1992) Sta Tistics: A Series of Textbooks and Monographs , vol.125
    • Benzécri, J.P.1
  • 7
    • 0041419619 scopus 로고    scopus 로고
    • Direct selection on allozymes is not required to explain heterogeneity among marker loci across a Mytilus hybrid zone
    • Bierne N, Daguin C, Bonhomme F, David P, Borsa P (2003) Direct selection on allozymes is not required to explain heterogeneity among marker loci across a Mytilus hybrid zone. Mol Ecol 12: 2505-2510
    • (2003) Mol Ecol , vol.12 , pp. 2505-2510
    • Bierne, N.1    Daguin, C.2    Bonhomme, F.3    David, P.4    Borsa, P.5
  • 8
    • 79955577378 scopus 로고    scopus 로고
    • The coupling hypothesis: Why genome scans may fail to map local adaptation genes
    • Bierne N, Welch J, Loire E, Bonhomme F, David P (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Mol Ecol 20: 2044-2072
    • (2011) Mol Ecol , vol.20 , pp. 2044-2072
    • Bierne, N.1    Welch, J.2    Loire, E.3    Bonhomme, F.4    David, P.5
  • 9
    • 84875867684 scopus 로고    scopus 로고
    • ST outliers sometimes so frequent?
    • Bierne N, Rose D, Welch J (2013) Pervasive selection or is it.? Why are FST outliers sometimes so frequent? Mol Ecol 22: 2061-2064
    • (2013) Mol Ecol , vol.22 , pp. 2061-2064
    • Bierne, N.1    Rose, D.2    Welch, J.3
  • 10
    • 77249170911 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP)
    • doi: 10.1002/9780470015902.a0005006.pub2
    • Brookes, AJ (2007) Single nucleotide polymorphism (SNP). Encyclopedia of life sciences, doi: 10.1002/9780470015902.a0005006.pub2
    • (2007) Encyclopedia of Life Sciences
    • Brookes, A.J.1
  • 11
    • 0035674902 scopus 로고    scopus 로고
    • Genetics and the fitness of hybrids
    • Burke JM, Arnold ML (2001) Genetics and the fitness of hybrids. Annu Rev Genet 35: 31-52
    • (2001) Annu Rev Genet , vol.35 , pp. 31-52
    • Burke, J.M.1    Arnold, M.L.2
  • 12
    • 0037274714 scopus 로고    scopus 로고
    • In vivo introduction of unpre-ferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein
    • Carlini DB, Stephan W (2003) In vivo introduction of unpre-ferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein. Genetics 163: 239-243
    • (2003) Genetics , vol.163 , pp. 239-243
    • Carlini, D.B.1    Stephan, W.2
  • 13
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics ana lyses under Linux and Windows
    • Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics ana lyses under Linux and Windows. Mol Ecol Resour 10: 564-567
    • (2010) Mol Ecol Resour , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 14
    • 59649090821 scopus 로고    scopus 로고
    • SNP genotyping using the Sequenom MassARRAY iPLEX platform
    • 2.12.1-12.12.18
    • Gabriel S, Ziaugra L, Tabbaa D (2009) SNP genotyping using the Sequenom MassARRAY iPLEX platform. Curr Protoc Hum Genet 60: 2.12.1-12.12.18
    • (2009) Curr Protoc Hum Genet , vol.60
    • Gabriel, S.1    Ziaugra, L.2    Tabbaa, D.3
  • 15
    • 34250727563 scopus 로고    scopus 로고
    • A unified approach for quantifying, testing and correcting population stratification in case-control association studies
    • Gorroochurn P, Hodge SE, Heiman GA, Greenberg DA (2007) A unified approach for quantifying, testing and correcting population stratification in case-control association studies. Hum Hered 64: 149-159
    • (2007) Hum Hered , vol.64 , pp. 149-159
    • Gorroochurn, P.1    Hodge, S.E.2    Heiman, G.A.3    Greenberg, D.A.4
  • 16
    • 84871042618 scopus 로고    scopus 로고
    • ST outlier loci within a mussel species
    • Gosset CC, Bierne N (2013) Differential introgression from a sister species explains high FST outlier loci within a mussel species. J Evol Biol 26: 14-26
    • (2013) J Evol Biol , vol.26 , pp. 14-26
    • Gosset, C.C.1    Bierne, N.2
  • 17
    • 0035983457 scopus 로고    scopus 로고
    • Population structure of plaice (Pleuro -nectes platessa L.) in northern Europe: Microsatellites revealed large-scale spatial and temporal homogeneity
    • Hoarau G, Rijnsdorp AD, Van Der Veer HW, Stam WT, Olsen JL (2002) Population structure of plaice (Pleuro -nectes platessa L.) in northern Europe: microsatellites revealed large-scale spatial and temporal homogeneity. Mol Ecol 11: 1165-1176
    • (2002) Mol Ecol , vol.11 , pp. 1165-1176
    • Hoarau, G.1    Rijnsdorp, A.D.2    van der Veer, H.W.3    Stam, W.T.4    Olsen, J.L.5
  • 18
    • 33745022862 scopus 로고    scopus 로고
    • Life on the margin: Genetic isolation and diversity loss in a peripheral marine ecosystem, the Baltic Sea
    • Johannesson K, André C (2006) Life on the margin: genetic isolation and diversity loss in a peripheral marine ecosystem, the Baltic Sea. Mol Ecol 15: 2013-2029
    • (2006) Mol Ecol , vol.15 , pp. 2013-2029
    • Johannesson, K.1    André, C.2
  • 19
    • 33748433801 scopus 로고    scopus 로고
    • Intro-gression and mitochondrial DNA heteroplasmy in the Baltic populations of mussels Mytilus trossulus and M. edulis
    • Kijewski T, Zbawicka M, Väinölä R, Wenne R (2006) Intro-gression and mitochondrial DNA heteroplasmy in the Baltic populations of mussels Mytilus trossulus and M. edulis. Mar Biol 149: 1371-1385
    • (2006) Mar Biol , vol.149 , pp. 1371-1385
    • Kijewski, T.1    Zbawicka, M.2    Väinölä, R.3    Wenne, R.4
  • 20
    • 0032737357 scopus 로고    scopus 로고
    • A comparison of multilocus clines maintained by environmental adaptation or by selection against hybrids
    • Kruuk LEB, Baird SJE, Gale K, Barton NH (1999) A comparison of multilocus clines maintained by environmental adaptation or by selection against hybrids. Genetics 153: 1959-1971
    • (1999) Genetics , vol.153 , pp. 1959-1971
    • Kruuk, L.E.B.1    Baird, S.J.E.2    Gale, K.3    Barton, N.H.4
  • 21
    • 85027941994 scopus 로고    scopus 로고
    • Genetic architecture in a marine hybrid zone: Comparing outlier detection and genomic clines analysis in the bivalve Macoma balthica
    • Luttikhuizen PC, Drent J, Peijnenburg KTCA, Van Der Veer HW, Johannesson K (2012) Genetic architecture in a marine hybrid zone: comparing outlier detection and genomic clines analysis in the bivalve Macoma balthica. Mol Ecol 21: 3048-3061
    • (2012) Mol Ecol , vol.21 , pp. 3048-3061
    • Luttikhuizen, P.C.1    Drent, J.2    Peijnenburg, K.T.C.A.3    van der Veer, H.W.4    Johannesson, K.5
  • 22
    • 0001905977 scopus 로고
    • Detecting neutral selection by comparing geographic variation in protein and DNA polymorphisms
    • In: Golding B, Chapman & Hall, New York, NY
    • McDonald JH (1994) Detecting neutral selection by comparing geographic variation in protein and DNA polymorphisms. In: Golding B (ed) Non-neutral evolution: theories and molecular data. Chapman & Hall, New York, NY, p 88-100
    • (1994) Non-neutral Evolution: Theories and Molecular Data , pp. 88-100
    • McDonald, J.H.1
  • 23
    • 0001282088 scopus 로고
    • Allozyme and morphometric characters of three species of Mytilus in the northern and southern hemispheres
    • McDonald JH, Seed HR, Koehn RK (1991) Allozyme and morphometric characters of three species of Mytilus in the northern and southern hemispheres. Mar Biol 111: 323-335
    • (1991) Mar Biol , vol.111 , pp. 323-335
    • McDonald, J.H.1    Seed, H.R.2    Koehn, R.K.3
  • 24
  • 26
    • 40449142217 scopus 로고    scopus 로고
    • A broad transition zone between an inner Baltic hybrid swarm and a pure North Sea subspecies of Macoma balthica (Mollusca, Bivalvia)
    • Nikula R, Strelkov P, Väinölä R (2008) A broad transition zone between an inner Baltic hybrid swarm and a pure North Sea subspecies of Macoma balthica (Mollusca, Bivalvia). Mol Ecol 17: 1505-1522
    • (2008) Mol Ecol , vol.17 , pp. 1505-1522
    • Nikula, R.1    Strelkov, P.2    Väinölä, R.3
  • 27
    • 64049114149 scopus 로고    scopus 로고
    • ST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean
    • Pariset L, Joost S, Ajmone Marsan P, Valentini A (2009) Landscape genomics and biased FST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean. BMC Genet 10: 7
    • (2009) BMC Genet , vol.10 , pp. 7
    • Pariset, L.1    Joost, S.2    Ajmone, M.P.3    Valentini, A.4
  • 28
    • 77955727591 scopus 로고    scopus 로고
    • Using differential introgression in hybrid zones to identify genomic regions involved in speciation
    • Payseur BA (2010) Using differential introgression in hybrid zones to identify genomic regions involved in speciation. Mol Ecol Resour 10: 806-820
    • (2010) Mol Ecol Resour , vol.10 , pp. 806-820
    • Payseur, B.A.1
  • 29
    • 0028865530 scopus 로고
    • Differential intro gression of mitochondrial DNA across species boundaries within the marine mussel genus Mytilus
    • Quesada H, Wenne R, Skibinski DOF (1995) Differential intro gression of mitochondrial DNA across species boundaries within the marine mussel genus Mytilus. Proc R Soc Lond 262: 51-56
    • (1995) Proc R Soc Lond , vol.262 , pp. 51-56
    • Quesada, H.1    Wenne, R.2    Skibinski, D.O.F.3
  • 30
    • 77953505570 scopus 로고    scopus 로고
    • Genetic diversity and differentiation among Lagopus lagopus populations in Scandinavia and Scotland: Evolutionary significant units confirmed by SNP markers
    • Quintela M, Berlin S, Wang B, Hoglund J (2010) Genetic diversity and differentiation among Lagopus lagopus populations in Scandinavia and Scotland: evolutionary significant units confirmed by SNP markers. Mol Ecol 19: 2380-2393
    • (2010) Mol Ecol , vol.19 , pp. 2380-2393
    • Quintela, M.1    Berlin, S.2    Wang, B.3    Hoglund, J.4
  • 31
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43: 223-225
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 32
    • 13444283976 scopus 로고    scopus 로고
    • Local adaptation and species segregation in two mussel (Mytilus edulis × Mytilus trossulus) hybrid zones
    • Riginos C, Cunningham CW (2005) Local adaptation and species segregation in two mussel (Mytilus edulis × Mytilus trossulus) hybrid zones. Mol Ecol 14: 381-400
    • (2005) Mol Ecol , vol.14 , pp. 381-400
    • Riginos, C.1    Cunningham, C.W.2
  • 33
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux
    • Rousset F (2008) GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour 8: 103-106
    • (2008) Mol Ecol Resour , vol.8 , pp. 103-106
    • Rousset, F.1
  • 34
    • 0036888985 scopus 로고    scopus 로고
    • Towards a molecular characterization of adaptation in local populations
    • Schlötterer C (2002) Towards a molecular characterization of adaptation in local populations. Curr Opin Genet Dev 12: 683-687
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 683-687
    • Schlötterer, C.1
  • 36
    • 68349150318 scopus 로고    scopus 로고
    • Evolutionary implications of discordant clines across the Baltic Mytilus hybrid zone (Mytilus edulis and Mytilus trossulus)
    • Stuckas H, Stoof K, Quesada H, Tiedemannet R (2009) Evolutionary implications of discordant clines across the Baltic Mytilus hybrid zone (Mytilus edulis and Mytilus trossulus). Heredity 103: 146-156
    • (2009) Heredity , vol.103 , pp. 146-156
    • Stuckas, H.1    Stoof, K.2    Quesada, H.3    Tiedemannet, R.4
  • 37
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 38
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Hig-gins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Hig-Gins, D.G.5
  • 39
    • 0026292069 scopus 로고
    • Genetic divergence and a hybrid zone between Baltic and North Sea Mytilus populations (Mytilidae: Mollusca)
    • Väinölä R, Hvilsom MM (1991) Genetic divergence and a hybrid zone between Baltic and North Sea Mytilus populations (Mytilidae: Mollusca). Biol J Linn Soc 43: 127-148
    • (1991) Biol J Linn Soc , vol.43 , pp. 127-148
    • Väinölä, R.1    Hvilsom, M.M.2
  • 40
    • 79952984879 scopus 로고    scopus 로고
    • Mytilus trossulus in Northern Europe
    • Väinölä R, Strelkov P (2011) Mytilus trossulus in Northern Europe. Mar Biol 158: 817-833
    • (2011) Mar Biol , vol.158 , pp. 817-833
    • Väinölä, R.1    Strelkov, P.2
  • 41
    • 0035983148 scopus 로고    scopus 로고
    • A review on SNP and other types of molecular markers and their use in animal genetics
    • Vignal A, Milan D, SanCristobal M, Eggen A (2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol 34: 275-305
    • (2002) Genet Sel Evol , vol.34 , pp. 275-305
    • Vignal, A.1    Milan, D.2    Sancristobal, M.3    Eggen, A.4
  • 42
    • 84888291044 scopus 로고    scopus 로고
    • Genetic biodiversity in the Baltic Sea: Species-specific patterns challenge management
    • others
    • Wennerström L, Laikre L, Ryman N, Utter FM and others (2013) Genetic biodiversity in the Baltic Sea: species-specific patterns challenge management. Biodivers Con-serv 22: 3045-3065
    • (2013) Biodivers Con-serv , vol.22 , pp. 3045-3065
    • Wennerström, L.1    Laikre, L.2    Ryman, N.3    Utter, F.M.4
  • 43
    • 77951584527 scopus 로고    scopus 로고
    • SNP identification, verification, and utility for population genetics in a non-model genus
    • Williams LM, Ma X, Boyko AR, Bustamante CD, Oleksiak MF (2010) SNP identification, verification, and utility for population genetics in a non-model genus. BMC Genet 11: 32
    • (2010) BMC Genet , vol.11 , pp. 32
    • Williams, L.M.1    Ma, X.2    Boyko, A.R.3    Bustamante, C.D.4    Oleksiak, M.F.5
  • 44
    • 84860633206 scopus 로고    scopus 로고
    • Identification and validation of novel SNP markers in European populations of marine Mytilus mussels
    • Zbawicka M, Drywa A, mietanka B, Wenne R (2012) Identification and validation of novel SNP markers in European populations of marine Mytilus mussels. Mar Biol 159: 1347-1362
    • (2012) Mar Biol , vol.159 , pp. 1347-1362
    • Zbawicka, M.1    Drywa, A.2    Mietanka, B.3    Wenne, R.4
  • 45
    • 57049103402 scopus 로고    scopus 로고
    • Past occurrences of hypoxia in the Baltic Sea and the role of climate variability, environmental change, and human impact
    • Zillén L, Conley DJ, Andrén T, Andrén E, Björck S (2008) Past occurrences of hypoxia in the Baltic Sea and the role of climate variability, environmental change, and human impact. Earth Sci Rev 91: 77-92
    • (2008) Earth Sci Rev , vol.91 , pp. 77-92
    • Zillén, L.1    Conley, D.J.2    Andrén, T.3    Andrén, E.4    Björck, S.5


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