메뉴 건너뛰기




Volumn 2014, Issue , 2014, Pages

O18Quant: A semiautomatic strategy for quantitative analysis of high-resolution 16O/18O labeled data

Author keywords

[No Author keywords available]

Indexed keywords

OXYGEN; OXYGEN 18; PEPTIDE; PROTEIN; PROTEOME;

EID: 84901798250     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/971857     Document Type: Article
Times cited : (8)

References (25)
  • 1
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi S. P., Rochon Y., Franza B. R., Aebersold R., Correlation between protein and mRNA abundance in yeast. Molecular and Cellular Biology 1999 19 3 1720 1730 2-s2.0-0033016717 (Pubitemid 29098230)
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.3 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 4
    • 0034282457 scopus 로고    scopus 로고
    • Quantitation and facilitated de novo sequencing of proteins by isotopic N-terminal labeling of peptides with a fragmentation-directing moiety
    • 2-s2.0-0034282457 10.1021/ac000265w
    • Munchbach M., Quadroni M., Miotto G., James P., Quantitation and facilitated de novo sequencing of proteins by isotopic N-terminal labeling of peptides with a fragmentation-directing moiety. Analytical Chemistry 2000 72 17 4047 4057 2-s2.0-0034282457 10.1021/ac000265w
    • (2000) Analytical Chemistry , vol.72 , Issue.17 , pp. 4047-4057
    • Munchbach, M.1    Quadroni, M.2    Miotto, G.3    James, P.4
  • 5
  • 7
    • 13244296561 scopus 로고
    • Pepsin-catalyzed exchange of oxygen atoms between water and carboxylic acids
    • 2-s2.0-13244296561
    • Sharon N., Grisaro V., Neumann H., Pepsin-catalyzed exchange of oxygen atoms between water and carboxylic acids. Archives of Biochemistry and Biophysics 1962 97 1 219 221 2-s2.0-13244296561
    • (1962) Archives of Biochemistry and Biophysics , vol.97 , Issue.1 , pp. 219-221
    • Sharon, N.1    Grisaro, V.2    Neumann, H.3
  • 8
    • 71649093953 scopus 로고    scopus 로고
    • 18O-isotopic labeling for proteomics mass spectrometry-based approaches: A critical review
    • 2-s2.0-71649093953 10.1016/j.talanta.2009.04.053
    • 18O-isotopic labeling for proteomics mass spectrometry-based approaches: a critical review. Talanta 2010 80 4 1476 1486 2-s2.0-71649093953 10.1016/j.talanta.2009.04.053
    • (2010) Talanta , vol.80 , Issue.4 , pp. 1476-1486
    • Capelo, J.L.1    Carreira, R.J.2    Fernandes, L.3    Lodeiro, C.4    Santos, H.M.5    Simal-Gandara, J.6
  • 9
    • 66749114309 scopus 로고    scopus 로고
    • 2-Labeling in quantitative proteomic strategies: A status report
    • 2-s2.0-66749114309 10.1021/pr8009879
    • 2-Labeling in quantitative proteomic strategies: a status report. Journal of Proteome Research 2009 8 5 2140 2143 2-s2.0-66749114309 10.1021/pr8009879
    • (2009) Journal of Proteome Research , vol.8 , Issue.5 , pp. 2140-2143
    • Fenselau, C.1    Yao, X.2
  • 10
    • 33846105280 scopus 로고    scopus 로고
    • 18O-labeling strategies for quantitative proteomics
    • DOI 10.1002/mas.20116
    • 18O-labeling strategies for quantitative proteomics. Mass Spectrometry Reviews 2007 26 1 121 136 2-s2.0-33846105280 10.1002/mas.20116 (Pubitemid 46061256)
    • (2007) Mass Spectrometry Reviews , vol.26 , Issue.1 , pp. 121-136
    • Miyagi, M.1    Rao, K.C.S.2
  • 11
    • 79954486675 scopus 로고    scopus 로고
    • 18O-tagged peptides labeled by enzyme-catalyzed oxygen exchange
    • 2-s2.0-79954486675 10.1021/ac1025368
    • 18O-tagged peptides labeled by enzyme-catalyzed oxygen exchange. Analytical Chemistry 2011 83 8 2890 2896 2-s2.0-79954486675 10.1021/ac1025368
    • (2011) Analytical Chemistry , vol.83 , Issue.8 , pp. 2890-2896
    • Fernandez-De-Cossio, J.1
  • 12
  • 14
  • 16
    • 52749096518 scopus 로고    scopus 로고
    • A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time
    • 2-s2.0-52749096518 10.1186/1471-2105-9-347
    • Xu H., Yang L., Freitas M. A., A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time. BMC Bioinformatics 2008 9, article 347 2-s2.0-52749096518 10.1186/1471-2105-9-347
    • (2008) BMC Bioinformatics , vol.9347
    • Xu, H.1    Yang, L.2    Freitas, M.A.3
  • 17
    • 71549138357 scopus 로고    scopus 로고
    • Robust-linear-model normalization to reduce technical variability in functional protein microarrays
    • 2-s2.0-71549138357 10.1021/pr900412k
    • Sboner A., Karpikov A., Chen G., Smith M., Dawn M., Freeman-Cook L., Schweitzer B., Gerstein M. B., Robust-linear-model normalization to reduce technical variability in functional protein microarrays. Journal of Proteome Research 2009 8 12 5451 5464 2-s2.0-71549138357 10.1021/pr900412k
    • (2009) Journal of Proteome Research , vol.8 , Issue.12 , pp. 5451-5464
    • Sboner, A.1    Karpikov, A.2    Chen, G.3    Smith, M.4    Dawn, M.5    Freeman-Cook, L.6    Schweitzer, B.7    Gerstein, M.B.8
  • 18
    • 84893868710 scopus 로고    scopus 로고
    • SILAC peptide ratio calculator: A tool for SILAC quantitation of peptides and post-translational modifications
    • 10.1021/pr400675n
    • Guan X., Rastogi N., Parthun M. R., Freitas M. A., SILAC peptide ratio calculator: a tool for SILAC quantitation of peptides and post-translational modifications. Journal of Proteome Research 2014 13 2 506 516 10.1021/pr400675n
    • (2014) Journal of Proteome Research , vol.13 , Issue.2 , pp. 506-516
    • Guan, X.1    Rastogi, N.2    Parthun, M.R.3    Freitas, M.A.4
  • 21
    • 78651233674 scopus 로고    scopus 로고
    • Perfluorooctanoic acid for shotgun proteomics
    • 2-s2.0-78651233674 10.1371/journal.pone.0015332 e15332
    • Kadiyala C. S. R., Tomechko S. E., Miyagi M., Perfluorooctanoic acid for shotgun proteomics. PLoS ONE 2010 5 12 2-s2.0-78651233674 10.1371/journal.pone. 0015332 e15332
    • (2010) PLoS ONE , vol.5 , Issue.12
    • Kadiyala, C.S.R.1    Tomechko, S.E.2    Miyagi, M.3
  • 23
    • 84863239359 scopus 로고    scopus 로고
    • BuildSummary: Using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics
    • 2-s2.0-84857865304 10.1021/pr200194p
    • Sheng Q., Dai J., Wu Y., Tang H., Zeng R., BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics. Journal of Proteome Research 2012 11 3 1494 1502 2-s2.0-84857865304 10.1021/pr200194p
    • (2012) Journal of Proteome Research , vol.11 , Issue.3 , pp. 1494-1502
    • Sheng, Q.1    Dai, J.2    Wu, Y.3    Tang, H.4    Zeng, R.5
  • 24
    • 33344474199 scopus 로고    scopus 로고
    • Efficient calculation of accurate masses of isotopic peaks
    • DOI 10.1016/j.jasms.2005.12.001, PII S1044030505010160
    • Rockwood A. L., Haimi P., Efficient calculation of accurate masses of isotopic peaks. Journal of the American Society for Mass Spectrometry 2006 17 3 415 419 2-s2.0-33344474199 10.1016/j.jasms.2005.12.001 (Pubitemid 43290200)
    • (2006) Journal of the American Society for Mass Spectrometry , vol.17 , Issue.3 , pp. 415-419
    • Rockwood, A.L.1    Haimi, P.2
  • 25
    • 75249085783 scopus 로고    scopus 로고
    • Methods for combining peptide intensities to estimate relative protein abundance
    • 2-s2.0-77449097629
    • Carrillo B., Yanofsky C., Laboissiere S., Nadon R., Kearney R. E., Methods for combining peptide intensities to estimate relative protein abundance. Bioinformatics 2010 26 1 98 103 2-s2.0-77449097629
    • (2010) Bioinformatics , vol.26 , Issue.1 , pp. 98-103
    • Carrillo, B.1    Yanofsky, C.2    Laboissiere, S.3    Nadon, R.4    Kearney, R.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.